mRNA_F-distichus_contig102993.263.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102993.263.1
Unique NamemRNA_F-distichus_contig102993.263.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102993.263.1 vs. uniprot
Match: A0A6H5KGA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.860e-10
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    4 LQGKTRGSAQHIRDEDGKLLRKPDEIRARWRRYFTSLLNTTPATLNRTIIEGLPQDPTALS---LGDPPVVSETKKALRSMSNGK 249
            L G+  G  Q I D++G LLR  D+I  RW R+F++LLNT P TLN  IIE + Q P       LG+ P + E  +A + + N K
Sbjct:   14 LSGRQTGGQQIIADDNGVLLRNKDDILQRWARFFSTLLNTKPPTLNPNIIERVTQRPATRDTQRLGEVPELEEVARATKGLKNWK 98
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BLAST of mRNA_F-distichus_contig102993.263.1 vs. uniprot
Match: A0A6H5K9P7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.760e-9
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    4 LQGKTRGSAQHIRDEDGKLLRKPDEIRARWRRYFTSLLNTTPATLNRTIIEGLPQDPTALSLGDPPVVSETKKALRSMSNGK 249
            ++GKT  ++Q+I+DEDGK+LR P  IR RW R+F +LLN  P T++    + + + PT + L D P + E ++A+R M+N K
Sbjct:  174 VEGKT-FTSQNIKDEDGKVLRDPTCIRQRWARWFHTLLNIKPPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRK 254
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BLAST of mRNA_F-distichus_contig102993.263.1 vs. uniprot
Match: A0A6H5JUC3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 5.030e-7
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    4 LQGKTRGSAQHIRDEDGKLLRKPDEIRARWRRYFTSLLNTTPATLNRTIIEGLPQDPTALSLGDPPVVSETKKALRSMSN 243
            ++G    ++QHI+DEDGK+LR P  IR R  R+F  LLNT   T++    +   + PT + L D P + E ++A+R M+N
Sbjct:  495 VEGNRSFTSQHIKDEDGKVLRDPTFIRQRLARWFHKLLNTKSPTIDLHAADKGIRWPTCVPLDDIPSLLEVEEAVREMAN 574
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102993.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGA1_9PHAE1.860e-1042.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9P7_9PHAE1.760e-942.68Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUC3_9PHAE5.030e-740.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102993contigF-distichus_contig102993:20..268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.857546-CDS-F-distichus_contig102993:19..2681622928946.857546-CDS-F-distichus_contig102993:19..268Fucus distichus monoicousCDSF-distichus_contig102993 20..268 -
1690885077.7170224-CDS-F-distichus_contig102993:19..2681690885077.7170224-CDS-F-distichus_contig102993:19..268Fucus distichus monoicousCDSF-distichus_contig102993 20..268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102993.263.1prot_F-distichus_contig102993.263.1Fucus distichus monoicouspolypeptideF-distichus_contig102993 20..268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102993.263.1

>prot_F-distichus_contig102993.263.1 ID=prot_F-distichus_contig102993.263.1|Name=mRNA_F-distichus_contig102993.263.1|organism=Fucus distichus monoicous|type=polypeptide|length=83bp
KLQGKTRGSAQHIRDEDGKLLRKPDEIRARWRRYFTSLLNTTPATLNRTI
IEGLPQDPTALSLGDPPVVSETKKALRSMSNGK
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mRNA from alignment at F-distichus_contig102993:20..268-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102993.263.1 ID=mRNA_F-distichus_contig102993.263.1|Name=mRNA_F-distichus_contig102993.263.1|organism=Fucus distichus monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at F-distichus_contig102993:20..268- (Fucus distichus monoicous)
AAGCTGCAGGGTAAAACAAGAGGAAGCGCACAGCATATCAGGGACGAAGA
CGGAAAGCTCCTACGGAAGCCCGACGAGATCCGTGCGAGGTGGAGACGAT
ATTTCACTTCCTTGCTCAACACAACCCCGGCCACTCTCAATCGAACAATT
ATCGAGGGCCTACCGCAAGATCCGACAGCCCTGTCACTCGGAGACCCGCC
GGTTGTGAGTGAGACGAAAAAGGCTCTGAGATCTATGTCCAATGGCAAG
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Coding sequence (CDS) from alignment at F-distichus_contig102993:20..268-

>mRNA_F-distichus_contig102993.263.1 ID=mRNA_F-distichus_contig102993.263.1|Name=mRNA_F-distichus_contig102993.263.1|organism=Fucus distichus monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at F-distichus_contig102993:20..268- (Fucus distichus monoicous)
AAGCTGCAGGGTAAAACAAGAGGAAGCGCACAGCATATCAGGGACGAAGA
CGGAAAGCTCCTACGGAAGCCCGACGAGATCCGTGCGAGGTGGAGACGAT
ATTTCACTTCCTTGCTCAACACAACCCCGGCCACTCTCAATCGAACAATT
ATCGAGGGCCTACCGCAAGATCCGACAGCCCTGTCACTCGGAGACCCGCC
GGTTGTGAGTGAGACGAAAAAGGCTCTGAGATCTATGTCCAATGGCAAGA
AGCTGCAGGGTAAAACAAGAGGAAGCGCACAGCATATCAGGGACGAAGAC
GGAAAGCTCCTACGGAAGCCCGACGAGATCCGTGCGAGGTGGAGACGATA
TTTCACTTCCTTGCTCAACACAACCCCGGCCACTCTCAATCGAACAATTA
TCGAGGGCCTACCGCAAGATCCGACAGCCCTGTCACTCGGAGACCCGCCG
GTTGTGAGTGAGACGAAAAAGGCTCTGAGATCTATGTCCAATGGCAAG
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