mRNA_F-distichus_contig102962.261.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102962.261.1
Unique NamemRNA_F-distichus_contig102962.261.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: A0A6H5L155_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L155_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.180e-14
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGRLVRLPFRELALASNANVGGPTTAAAMAAA 129
            +I VHFG LVG+GRL RLPFRELALASNANVGGPTTAAAMAAA
Sbjct:  534 QIAVHFGVLVGVGRLFRLPFRELALASNANVGGPTTAAAMAAA 576
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: D8LIU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.180e-14
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGRLVRLPFRELALASNANVGGPTTAAAMAAA 129
            +I VHFG LVG+GRL RLPFRELALASNANVGGPTTAAAMAAA
Sbjct:  477 QIAVHFGVLVGVGRLFRLPFRELALASNANVGGPTTAAAMAAA 519
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: A0A835YW30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW30_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.640e-9
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGRLVRLPFRELALASNANVGGPTTAAAMAA 126
            +I  H+ F VG GR +RLPF +L LASNANVGGPTTAAA AA
Sbjct:  307 QIAAHYAFTVGAGRALRLPFNQLLLASNANVGGPTTAAAFAA 348
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: A0A7S3XZE0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZE0_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 7.970e-9
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGRLVRLPFRELALASNANVGGPTTAAAMAAA 129
            ++ +HFG LVG GR + LP R+L LASNANVGGPT+AAAMA A
Sbjct:  392 QVALHFGVLVGGGRALGLPLRKLLLASNANVGGPTSAAAMAGA 434
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: W7TV24_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TV24_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.210e-8
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGR-LVRLPFRELALASNANVGGPTTAAAMA 123
            ++V H  FL+G GR L+RLP +EL +ASNANVGGPTTAAAMA
Sbjct:  407 QLVFHLTFLLGAGRGLLRLPLKELLVASNANVGGPTTAAAMA 448
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: A0A8J6XZU6_9BACT (DUF819 family protein n=1 Tax=Candidatus Polarisedimenticola svalbardensis TaxID=2886004 RepID=A0A8J6XZU6_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 9.680e-8
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    4 IVVHFGFLVGMGRLVRLPFRELALASNANVGGPTTAAAMAAA 129
            +++H  F++G GRL+RL   E+ +ASNAN+GGPTTAAAMA A
Sbjct:  305 LIIHLAFILGAGRLLRLDLIEIVIASNANMGGPTTAAAMATA 346
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: A0A448ZN12_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZN12_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.740e-8
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGR-LVRLPFRELALASNANVGGPTTAAAMA 123
            +I VHF  LV +GR + RLP REL LASNANVGGPTTAAAMA
Sbjct:  417 QIGVHFATLVAVGRGIFRLPSRELYLASNANVGGPTTAAAMA 458
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: A0A1Z5JNK0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNK0_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 9.740e-8
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGR-LVRLPFRELALASNANVGGPTTAAAMA 123
            ++  HFG L+G+GR L+RL   EL LASNANVGGPTTAAAMA
Sbjct:  372 QVAAHFGILMGIGRGLLRLDANELYLASNANVGGPTTAAAMA 413
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: B7FUA6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUA6_PHATC)

HSP 1 Score: 55.1 bits (131), Expect = 1.320e-7
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGR-LVRLPFRELALASNANVGGPTTAAAMA 123
            +I VHFG L+ +GR + R+P +EL LASNANVGGPTTAAAMA
Sbjct:  286 QIGVHFGVLMSVGRGIFRIPSKELYLASNANVGGPTTAAAMA 327
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BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Match: UPI000900BDCF (uncharacterized protein LOC104753361 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000900BDCF)

HSP 1 Score: 54.7 bits (130), Expect = 1.810e-7
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 KIVVHFGFLVGMGRLVRLPFRELALASNANVGGPTTAAAMA 123
            +IV+H G L+G+G+++++  R L LASNANVGGPTTAA MA
Sbjct:  289 QIVIHLGVLLGIGKVMKIELRLLLLASNANVGGPTTAAGMA 329
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102962.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L155_9PHAE2.180e-1488.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIU9_ECTSI2.180e-1488.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YW30_9STRA1.640e-969.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XZE0_HETAK7.970e-967.44Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
W7TV24_9STRA5.210e-869.05Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8J6XZU6_9BACT9.680e-859.52DUF819 family protein n=1 Tax=Candidatus Polarised... [more]
A0A448ZN12_9STRA9.740e-873.81Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5JNK0_FISSO9.740e-869.05Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
B7FUA6_PHATC1.320e-769.05Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
UPI000900BDCF1.810e-760.98uncharacterized protein LOC104753361 n=1 Tax=Camel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102962contigF-distichus_contig102962:53..184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D8LIU9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF819)
EggNOG OGs2QQM4@2759,COG5505@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.7247713-CDS-F-distichus_contig102962:52..1841622928946.7247713-CDS-F-distichus_contig102962:52..184Fucus distichus monoicousCDSF-distichus_contig102962 53..184 +
1690885077.6922143-CDS-F-distichus_contig102962:52..1841690885077.6922143-CDS-F-distichus_contig102962:52..184Fucus distichus monoicousCDSF-distichus_contig102962 53..184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102962.261.1prot_F-distichus_contig102962.261.1Fucus distichus monoicouspolypeptideF-distichus_contig102962 53..184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102962.261.1

>prot_F-distichus_contig102962.261.1 ID=prot_F-distichus_contig102962.261.1|Name=mRNA_F-distichus_contig102962.261.1|organism=Fucus distichus monoicous|type=polypeptide|length=44bp
KIVVHFGFLVGMGRLVRLPFRELALASNANVGGPTTAAAMAAA*
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mRNA from alignment at F-distichus_contig102962:53..184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102962.261.1 ID=mRNA_F-distichus_contig102962.261.1|Name=mRNA_F-distichus_contig102962.261.1|organism=Fucus distichus monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at F-distichus_contig102962:53..184+ (Fucus distichus monoicous)
AAGATCGTCGTGCACTTCGGCTTCCTGGTGGGAATGGGACGCCTCGTCCG
GCTGCCCTTCCGAGAGCTTGCGCTAGCCTCTAACGCGAACGTGGGAGGTC
CCACGACGGCCGCTGCCATGGCCGCTGCGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig102962:53..184+

>mRNA_F-distichus_contig102962.261.1 ID=mRNA_F-distichus_contig102962.261.1|Name=mRNA_F-distichus_contig102962.261.1|organism=Fucus distichus monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at F-distichus_contig102962:53..184+ (Fucus distichus monoicous)
AAGATCGTCGTGCACTTCGGCTTCCTGGTGGGAATGGGACGCCTCGTCCG
GCTGCCCTTCCGAGAGCTTGCGCTAGCCTCTAACGCGAACGTGGGAGGTC
CCACGACGGCCGCTGCCATGGCCGCTGCGTAGAAGATCGTCGTGCACTTC
GGCTTCCTGGTGGGAATGGGACGCCTCGTCCGGCTGCCCTTCCGAGAGCT
TGCGCTAGCCTCTAACGCGAACGTGGGAGGTCCCACGACGGCCGCTGCCA
TGGCCGCTGCGTAG
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