mRNA_F-distichus_contig102937.260.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102937.260.1
Unique NamemRNA_F-distichus_contig102937.260.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 6.990e-58
Identity = 144/336 (42.86%), Postives = 160/336 (47.62%), Query Frame = 1
Query:   16 DEFDFSVSDLAVDLRDGVRLTRLVELVTGEWGLASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAP--------ITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRA-------------------------------------------------------------RLHARWELPSLMMADAAALRGCWGGGGXGESGEGREASNGE-----------LLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHPWV 783
            DEFDF VS+LAVDLRDGVRLTRL+E+VTGEWGLA  LRVPAVSRLQ                                             KI N  +ALERLE D   IT  + ++         +TP+EIVDGDR ATLRLLW II RYSL++LLDR+AL REAE VVSAA KWRRA                                                             R  A  E P L + D AA+   W      E   G                  LLSALL WCQAVCHGYGVPV NFTTSFADGRALCLL+HYYHP +
Sbjct:  543 DEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQ---------------------------------------------KIFNTKRALERLEADAGPITLGSNSSXXXXXXXXAVTPKEIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVVSAARKWRRAGFSPARPEXXXXXXXXXXXXXXXXXXXXXXXXXXVGEATVVDFGVMSPGSXXXXXAPPAGGRAVAGEEHPPLELPDVAAMVEGW------EEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRI 827          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 2.820e-56
Identity = 135/304 (44.41%), Postives = 155/304 (50.99%), Query Frame = 1
Query:   16 DEFDFSVSDLAVDLRDGVRLTRLVELVTGEWGLASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRA-------------------------------------RLHARWELPSLMMADAAALRGCWGGGGXGESGEGREASNGE-----------LLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHPWV 783
            DEFDF VS+LAVDLRDGVRLTRL+E+VTGEWGLA  LRVPAVSRLQV                                  S P + S    +   G++       GA          ++P++IVDGDR ATLRLLW II RYSL++LLDR+AL REA+ V+SAA KWRRA                                     R  A  E P L + D AA+   W      E   G                  LLSALL WCQAVCHGYGVPV NFTTSFADGRALCLL+HYYHP +
Sbjct:  430 DEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQV----------------------------------SFPGILSYVALMFKRGESCGSGGGGGA----------VSPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAQGVISAARKWRRAGFSPARPERAMGKMDAIDFGVMSPGSPASPVAPPAEGRAVAGDEHPPLELPDVAAMVEGW------EEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRI 683          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: A0A835Z978_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z978_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.050e-39
Identity = 105/263 (39.92%), Postives = 131/263 (49.81%), Query Frame = 1
Query:    4 RRKADEFDFSVSDLAVDLRDGVRLTRLVELVTGEWG-----LASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMADAAALRGCWGGGGXGESGEGREASNGELLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHP 777
            +R  DE+DF+V+ L  DLRDGVRL RL EL+T   G     L S LRVP V R                                              QK+ N G A+ RL  DGA+    T       ++IVDG +  T+ LLW +I+RY L+SL+D +AL RE  AVV    K ++  L    + P L +  A A+         G SG G      +L  AL  W QAVCHGYGVP+ NFTTSFADGRALCLL+H+YHP
Sbjct:  608 QRYVDEYDFTVTSLKTDLRDGVRLVRLAELLTQGTGKPVGQLTSQLRVPPVDR---------------------------------------------TQKMHNTGLAVARLVEDGAL-PLGTHEIGEAAKDIVDGHQGRTIGLLWAVISRYKLSSLVDVQALTREITAVVRVQRKRQQLGLPTLHDGPRLCLPSAEAI---------GLSGHG------DLQQALAVWAQAVCHGYGVPIHNFTTSFADGRALCLLVHHYHP 809          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: A0A2R5G7A7_9STRA (Abnormal spindle-like microcephaly-associated protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7A7_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.670e-33
Identity = 102/283 (36.04%), Postives = 135/283 (47.70%), Query Frame = 1
Query:    1 ERRKADEFDFSVSDLAVDLRDGVRLTRLVELVTG--EWGLASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITAS--TAAA------PITPQ-----EIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMADAAALRGCWGGGGXGESGEGREASNGEL-LSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHPWVSERANI 801
            E+RK DEFDF V++LAVDLRDG+RL+R VEL+T   +  L+  +R PAVSRLQ                                             K+ N   AL+ LER G  +  S  TAA       P+ P+     +IVDGDR  TL LLW +I ++ L  +L  EAL  E   V +   K     +    EL         A RG         + E +E  + E  +  LL WCQ++C  +G+ V NFTTS A GRALCLL+H+YHP +  R +I
Sbjct:  542 EQRKLDEFDFRVTNLAVDLRDGLRLSRAVELLTDNRDRTLSELMRAPAVSRLQ---------------------------------------------KLHNTDVALKELERQGVSLVFSHNTAAGLARAQMPVKPETISNRDIVDGDRRKTLALLWKMILKWKLDGVLPEEALCDETSRVRTMHGKTASRIMAKSEELAKHHKMQVRAQRG------EATAEENQETEHTEAAMDVLLRWCQSICAHHGMRVANFTTSMASGRALCLLIHHYHPGLLPRESI 773          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: UPI001EE6194E (LOW QUALITY PROTEIN: abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE6194E)

HSP 1 Score: 138 bits (347), Expect = 3.820e-33
Identity = 94/263 (35.74%), Postives = 136/263 (51.71%), Query Frame = 1
Query:   16 DEFDFSVSDLAVDLRDGVRLTRLVELVTGEWGLASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMADAAALRGCWGGGGXGESGEGREASNGELLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHPWVSERANIH 804
            DEFD++V+ L VDLRDGVRL+R++EL+TGEW L   LR PAVSRLQ                        ++ ++ VF      A+T R   ++ +         DG  I A         ++IVDG RE TL++LW +I  + +  L++ E L  E     S  ++  R +++ + +L  +   D  A R         +SG G  + + E L  LL WC+ VC  YGV V NFT SF+DGRALC L+H+YHP +   + +H
Sbjct: 1865 DEFDYAVTKLGVDLRDGVRLSRVLELLTGEWNLVKCLRAPAVSRLQK-----------------------IHNIEMVF-----RALTERGLDVAKL---------DGGKIGA---------RDIVDGHREKTLKILWHLIFHFQVDVLINLEQLREET----SLLEQSLRVKVNMQ-KLLKIKQEDNLARR---------DSG-GLMSQDNERLEMLLKWCRVVCLHYGVKVENFTVSFSDGRALCCLLHHYHPGLLPLSQVH 2066          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: A0A8K1FN67_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN67_PYTOL)

HSP 1 Score: 137 bits (345), Expect = 6.720e-33
Identity = 98/267 (36.70%), Postives = 136/267 (50.94%), Query Frame = 1
Query:   16 DEFDFSVSDLAVDLRDGVRLTRLVELVTGEWG--LASALRVPAVSRLQ-VRDVKCCL--LGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMADAAALRGCWGGGGXGESGEGREASNGELLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHPWVSERANI 801
            DE D  VS+LAVDLRDGVRL +L+E +T   G  L+S LRVPA+SRLQ V +V+ CL  L   CGR     +    +    V  S +        + +  M KA                        +VDG RE TL LLW +I+ + L SL++   L +E + V +    +R +  +    +   ++A ++            E  +G +A   ELL   L WC+AVC  Y +PVT+FT SFADGRALC L+HYYHP +  R+ I
Sbjct:  642 DEVDLEVSNLAVDLRDGVRLAKLLEALTPCRGQPLSSFLRVPALSRLQKVHNVEICLHYLQETCGRDILESIRSSYSHGKSVRSSFTTLRSKQDVKILETMSKA------------------------VVDGHREKTLALLWKLISVFQLRSLINMTRLTKEVQNVKNRMS-FRASEFYESSRISQAIIARSST---------PDEENQGIDAEVSELL---LEWCRAVCANYSIPVTDFTESFADGRALCYLLHYYHPMLLGRSEI 871          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: UPI0006B0F883 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0F883)

HSP 1 Score: 135 bits (341), Expect = 2.360e-32
Identity = 92/266 (34.59%), Postives = 130/266 (48.87%), Query Frame = 1
Query:    4 RRKADEFDFSVSDLAVDLRDGVRLTRLVELVTGEWGLASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMADAAALRGCWGGGGXGESGEGREASNGELLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHPWVSERANI 801
            +R  +EFDF+V++LAVDLR G+RL R++EL+  +W L++ +RVPA+SRLQ                                             KI N+G  L+ L   G ++  S     IT ++I+DG+RE TL LLW II +  +  L+ +E + RE       +   R     AR + PS +    A  +         +  E       E L  LL WCQAVC  Y +PV NFT SF+DGRALC L+H+YHP V +  +I
Sbjct:  913 QRALEEFDFAVTNLAVDLRCGLRLVRVLELLLQQWTLSNQVRVPAISRLQ---------------------------------------------KIYNVGLGLQALTDSGMILDES-----ITSRDIIDGNREKTLLLLWQIIFKTQVECLIKKEKM-REEILYHQKSLSTRNQLALARLQNPSKVTEKIAQTK---------DDDENVFNMENESLDFLLKWCQAVCTQYNIPVENFTVSFSDGRALCYLIHHYHPNVLQEKDI 1118          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: UPI00138F9FE1 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138F9FE1)

HSP 1 Score: 135 bits (340), Expect = 3.210e-32
Identity = 89/259 (34.36%), Postives = 120/259 (46.33%), Query Frame = 1
Query:    1 ERRKADEFDFSVSDLAVDLRDGVRLTRLVELVTGEWGLASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMADAAALRGCWGGGGXGESGEGREASNGELLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHP 777
            ++R  DEFD++V+++A DLRDG+RLTR+VEL++  W L S LRVPA+SRLQ                                             KI N+   L+ L+  G  +     +  ITP+ IVDG RE TL LLW II  + +  LL  E L  E   +  + D               L   D + + G        +S E         L  LL WC+ VC  YG+ + NFT SF+DGRALC L+H+YHP
Sbjct:  762 QQRAIDEFDYAVTNIATDLRDGLRLTRVVELLSHNWRLTSTLRVPAISRLQ---------------------------------------------KIHNVEVVLKALKDHGVPVGEGEGSG-ITPRHIVDGHREKTLNLLWMIIVNFQVNILLSEEKLKEEISFLEQSLDLEH-----------CLAACDVSRIMGL--PRNKRDSLESGLYFKSARLGLLLKWCRLVCKSYGLKIDNFTVSFSDGRALCYLLHHYHP 961          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: A0A1S3KBD7_LINUN (abnormal spindle-like microcephaly-associated protein homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KBD7_LINUN)

HSP 1 Score: 134 bits (337), Expect = 8.090e-32
Identity = 93/256 (36.33%), Postives = 124/256 (48.44%), Query Frame = 1
Query:   16 DEFDFSVSDLAVDLRDGVRLTRLVELVTGEWGLASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMA--DAAALRGCWGGGGXGESGEGREASNGELLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHP 777
            DEFDF+V+ L+ DLRDGVRL R+VEL+T +W L+S LRVPA+SRLQ                                             KI N+  AL+ L   G  +T     A I P+++VDG RE TL +LW +I  + +  LL+ + L  E + +           L  +  L +++    D    RG     G  ES E         LS LL WC+AVC  Y + V NFT SF+DGRALC L+H+YHP
Sbjct: 1331 DEFDFAVTKLSKDLRDGVRLARIVELLTRDWSLSSLLRVPAISRLQ---------------------------------------------KIHNVEVALKALANRGLDVTTPQGGA-INPRDVVDGHREKTLAMLWRVIFNFQVDVLLNLDQLREEVDFLKKT--------LCVKTHLTAVLNYENDLGLERG-----GRRESMEPDLYFKSNGLSLLLKWCKAVCAFYNLEVENFTVSFSDGRALCYLVHHYHP 1527          
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Match: UPI001B88A250 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88A250)

HSP 1 Score: 134 bits (337), Expect = 8.120e-32
Identity = 92/256 (35.94%), Postives = 128/256 (50.00%), Query Frame = 1
Query:   16 DEFDFSVSDLAVDLRDGVRLTRLVELVTGEWGLASALRVPAVSRLQVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISNMGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSLTSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMA--DAAALRGCWGGGGXGESGEGREASNGELLSALLAWCQAVCHGYGVPVTNFTTSFADGRALCLLMHYYHP 777
            DEFD+SV+ L VDLRDG RL R+ E +TGEW L   LR PA+SRLQ                        M+ ++ VF            +K+++ G  + ++E  G  I+A          +IVDG RE TL+LLW +I  + +  L+++E L  E         K+    L  +  +  L+    D++A R         +SGE       E LS LL WC+ VC  YGV + NFT SF+DGRALC L+H+YHP
Sbjct: 1464 DEFDYSVTKLGVDLRDGFRLMRVFEFLTGEWNLVRQLRGPAISRLQK-----------------------MHNVNVVF------------KKLADRGLDISQVE--GGKISAC---------DIVDGHREKTLKLLWYLIFNFQVDVLINQEELTEEI--------KYLERSLRMKISMQKLLHVYPDSSARR---------DSGETDLCMENERLSLLLQWCRVVCLHYGVKIENFTVSFSDGRALCCLVHHYHP 1656          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102937.260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN9_ECTSI6.990e-5842.86Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE2.820e-5644.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z978_9STRA1.050e-3939.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R5G7A7_9STRA3.670e-3336.04Abnormal spindle-like microcephaly-associated prot... [more]
UPI001EE6194E3.820e-3335.74LOW QUALITY PROTEIN: abnormal spindle-like microce... [more]
A0A8K1FN67_PYTOL6.720e-3336.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0006B0F8832.360e-3234.59abnormal spindle-like microcephaly-associated prot... [more]
UPI00138F9FE13.210e-3234.36abnormal spindle-like microcephaly-associated prot... [more]
A0A1S3KBD7_LINUN8.090e-3236.33abnormal spindle-like microcephaly-associated prot... [more]
UPI001B88A2508.120e-3235.94abnormal spindle-like microcephaly-associated prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102937contigF-distichus_contig102937:743..1693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D8LLN9
Preferred nameASPM
KEGG koko:K16743,ko:K16774
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size807
Cds size807
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.6543503-CDS-F-distichus_contig102937:742..13881622928946.6543503-CDS-F-distichus_contig102937:742..1388Fucus distichus monoicousCDSF-distichus_contig102937 743..1388 -
1690885077.6663096-CDS-F-distichus_contig102937:742..13881690885077.6663096-CDS-F-distichus_contig102937:742..1388Fucus distichus monoicousCDSF-distichus_contig102937 743..1388 -
1622928946.6711352-CDS-F-distichus_contig102937:1532..16931622928946.6711352-CDS-F-distichus_contig102937:1532..1693Fucus distichus monoicousCDSF-distichus_contig102937 1533..1693 -
1690885077.681998-CDS-F-distichus_contig102937:1532..16931690885077.681998-CDS-F-distichus_contig102937:1532..1693Fucus distichus monoicousCDSF-distichus_contig102937 1533..1693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102937.260.1prot_F-distichus_contig102937.260.1Fucus distichus monoicouspolypeptideF-distichus_contig102937 743..1693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102937.260.1

>prot_F-distichus_contig102937.260.1 ID=prot_F-distichus_contig102937.260.1|Name=mRNA_F-distichus_contig102937.260.1|organism=Fucus distichus monoicous|type=polypeptide|length=269bp
ERRKADEFDFSVSDLAVDLRDGVRLTRLVELVTGEWGLASALRVPAVSRL
QVRDVKCCLLGVECGRARSRELAQGMNPLDGVFCSRSCPAVTSRAQKISN
MGKALERLERDGAMITASTAAAPITPQEIVDGDREATLRLLWCIIARYSL
TSLLDREALVREAEAVVSAADKWRRARLHARWELPSLMMADAAALRGCWG
GGGGGESGEGREASNGELLSALLAWCQAVCHGYGVPVTNFTTSFADGRAL
CLLMHYYHPWVSERANIH*
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mRNA from alignment at F-distichus_contig102937:743..1693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102937.260.1 ID=mRNA_F-distichus_contig102937.260.1|Name=mRNA_F-distichus_contig102937.260.1|organism=Fucus distichus monoicous|type=mRNA|length=951bp|location=Sequence derived from alignment at F-distichus_contig102937:743..1693- (Fucus distichus monoicous)
GAACGGCGAAAAGCAGACGAGTTCGACTTTTCGGTGTCAGACCTGGCCGT GGACCTCCGCGACGGCGTAAGACTGACGCGCCTGGTGGAGCTCGTGACGG GCGAGTGGGGACTGGCGTCGGCGCTCCGAGTACCCGCAGTTTCGAGGCTT CAGGTAAGAGAGTCCCCCGCTGAAGGAATCTGAGCGTGGACTTTTTTGTG CTTTGGTAGCAAGATGAGAGTAGAGCCCTTTAAGACTTCCCTCACCCCCG GTCCGCCCGGTCTTTCGTCATACGTCAAACTACATAGTCGACCGACCTTA GCGAGTGTTAAGTGTTGTCTGTTGGGTGTTGAGTGTGGCAGGGCAAGATC CAGAGAGCTAGCGCAGGGAATGAATCCCTTGGATGGTGTGTTCTGTTCCC GTTCGTGCCCTGCCGTTACCTCTCGCGCACAGAAAATCTCTAATATGGGC AAGGCCCTGGAGCGGCTGGAACGCGACGGAGCGATGATTACCGCCTCCAC CGCAGCCGCCCCGATCACACCCCAGGAGATCGTGGATGGCGACCGCGAGG CCACTCTCCGCCTGCTTTGGTGCATCATCGCACGGTACTCCCTCACTTCT CTGCTCGACCGCGAAGCCCTCGTACGCGAGGCCGAGGCCGTGGTCTCCGC CGCTGACAAGTGGCGCCGCGCCCGTCTTCACGCCCGCTGGGAGCTTCCCT CGCTGATGATGGCGGACGCGGCTGCTCTGCGAGGGTGCTGGGGTGGTGGC GGCGGCGGCGAGAGCGGTGAAGGTCGGGAAGCGAGCAACGGAGAGCTGCT ATCTGCGCTCCTGGCGTGGTGTCAGGCCGTGTGCCACGGATATGGCGTGC CTGTCACCAACTTTACGACATCTTTTGCCGACGGCCGCGCGCTGTGCCTC TTGATGCACTACTACCACCCCTGGGTGAGCGAGAGAGCAAACATCCATTA A
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Coding sequence (CDS) from alignment at F-distichus_contig102937:743..1693-

>mRNA_F-distichus_contig102937.260.1 ID=mRNA_F-distichus_contig102937.260.1|Name=mRNA_F-distichus_contig102937.260.1|organism=Fucus distichus monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at F-distichus_contig102937:743..1693- (Fucus distichus monoicous)
GAACGGCGAAAAGCAGACGAGTTCGACTTTTCGGTGTCAGACCTGGCCGT
GGACCTCCGCGACGGCGTAAGACTGACGCGCCTGGTGGAGCTCGTGACGG
GCGAGTGGGGACTGGCGTCGGCGCTCCGAGTACCCGCAGTTTCGAGGCTT
CAGGTAAGAGAGAACGGCGAAAAGCAGACGAGTTCGACTTTTCGGTGTCA
GACCTGGCCGTGGACCTCCGCGACGGCGTAAGACTGACGCGCCTGGTGGA
GCTCGTGACGGGCGAGTGGGGACTGGCGTCGGCGCTCCGAGTACCCGCAG
TTTCGAGGCTTCAGGTAAGAGATGTTAAGTGTTGTCTGTTGGGTGTTGAG
TGTGGCAGGGCAAGATCCAGAGAGCTAGCGCAGGGAATGAATCCCTTGGA
TGGTGTGTTCTGTTCCCGTTCGTGCCCTGCCGTTACCTCTCGCGCACAGA
AAATCTCTAATATGGGCAAGGCCCTGGAGCGGCTGGAACGCGACGGAGCG
ATGATTACCGCCTCCACCGCAGCCGCCCCGATCACACCCCAGGAGATCGT
GGATGGCGACCGCGAGGCCACTCTCCGCCTGCTTTGGTGCATCATCGCAC
GGTACTCCCTCACTTCTCTGCTCGACCGCGAAGCCCTCGTACGCGAGGCC
GAGGCCGTGGTCTCCGCCGCTGACAAGTGGCGCCGCGCCCGTCTTCACGC
CCGCTGGGAGCTTCCCTCGCTGATGATGGCGGACGCGGCTGCTCTGCGAG
GGTGCTGGGGTGGTGGCGGCGGCGGCGAGAGCGGTGAAGGTCGGGAAGCG
AGCAACGGAGAGCTGCTATCTGCGCTCCTGGCGTGGTGTCAGGCCGTGTG
CCACGGATATGGCGTGCCTGTCACCAACTTTACGACATCTTTTGCCGACG
GCCGCGCGCTGTGCCTCTTGATGCACTACTACCACCCCTGGGTGAGCGAG
AGAGCAAACATCCATTAATGTTAAGTGTTGTCTGTTGGGTGTTGAGTGTG
GCAGGGCAAGATCCAGAGAGCTAGCGCAGGGAATGAATCCCTTGGATGGT
GTGTTCTGTTCCCGTTCGTGCCCTGCCGTTACCTCTCGCGCACAGAAAAT
CTCTAATATGGGCAAGGCCCTGGAGCGGCTGGAACGCGACGGAGCGATGA
TTACCGCCTCCACCGCAGCCGCCCCGATCACACCCCAGGAGATCGTGGAT
GGCGACCGCGAGGCCACTCTCCGCCTGCTTTGGTGCATCATCGCACGGTA
CTCCCTCACTTCTCTGCTCGACCGCGAAGCCCTCGTACGCGAGGCCGAGG
CCGTGGTCTCCGCCGCTGACAAGTGGCGCCGCGCCCGTCTTCACGCCCGC
TGGGAGCTTCCCTCGCTGATGATGGCGGACGCGGCTGCTCTGCGAGGGTG
CTGGGGTGGTGGCGGCGGCGGCGAGAGCGGTGAAGGTCGGGAAGCGAGCA
ACGGAGAGCTGCTATCTGCGCTCCTGGCGTGGTGTCAGGCCGTGTGCCAC
GGATATGGCGTGCCTGTCACCAACTTTACGACATCTTTTGCCGACGGCCG
CGCGCTGTGCCTCTTGATGCACTACTACCACCCCTGGGTGAGCGAGAGAG
CAAACATCCATTAA
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