mRNA_F-distichus_contig10292.258.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10292.258.1
Unique NamemRNA_F-distichus_contig10292.258.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A6H5L5K3_9PHAE (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5K3_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 1.620e-117
Identity = 166/213 (77.93%), Postives = 182/213 (85.45%), Query Frame = 1
Query:   19 TMYVDGWAARVHDDANLVVLAIMALMAAWSMWKQDSWTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCAFPESLTPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWSCALARTYSRPS--PREKKFL 651
            +MYVDG AAR+HDD NL VLA MALMAAW+MWK D WTQYALT FAAGYMVLDACWILCNP+GVKSP+TVLGHHVATL VLVDPL  PQHA YTACALLVEFNT LLILRRRV+WG  LE+PFALSWVALRL WYPFL FYF MC FPE+L  +YPE LV+WR +VE +R   MFLGSYLAWVGIC+FQGWWSCAL R+Y RP+   R+KKFL
Sbjct:   57 SMYVDGLAARIHDDMNLAVLAGMALMAAWAMWKGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPRTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYGRPAVATRDKKFL 269          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A835Z8V7_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V7_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.960e-67
Identity = 115/197 (58.38%), Postives = 136/197 (69.04%), Query Frame = 1
Query:   34 GWAARVHDDANLVVLAIMALMAAWSMWKQDSWTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGR--YLEIPFALSWVALRLAWYPFLAFYFAMCAFPESLTPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWSCALARTY 618
            G  A++HDD NLVVL  MAL +  +M+ +D   QY LT FA  YMV DA WILCN   VKSP+TVLGHH ATL VL+DP  HPQHALYT  ALLVE NT LLI RRR  WG    +E PF  SWVALRL WYPFLAF++ +CAFP  L  +YP  +V+WR  +E +   +++  SY AWVGIC+FQ WWS  L R Y
Sbjct:   59 GRGAQLHDDMNLVVLLGMALTSMVAMYTRDRALQYGLTVFAVAYMVTDAAWILCNMRAVKSPRTVLGHHAATLAVLIDPYMHPQHALYTCWALLVEANTFLLIARRRFRWGASALVEAPFVASWVALRLIWYPFLAFFWGLCAFP-GLADVYPAAIVRWRLRIEVDL-VRLYPASYAAWVGICVFQLWWSAQLFRNY 253          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A7S0VYL2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYL2_9CRYP)

HSP 1 Score: 166 bits (420), Expect = 5.000e-45
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = 1
Query:    1 SKSLIPTMYVDGWAARVHDDANLVVLAIMALMAAWSMWKQDSWTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCAFPESLTPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWS 597
            SK+     +    A+ +HD  NL VL+++   + +++      +   LT     Y++LD+ W+L  P  VKSP  V+ HH ATLLVL+DPL  P H++YT+  LLVE NTLLL+LRR++++   +E+PF +SWV LR  WYP L F+F +C+ P +L P++P  +V+ R  +EG     M   S ++W  +C+ Q  W+
Sbjct:   37 SKAAAEVKWQPSAASELHDSCNLFVLSLLGFGSVYALLTNHQASHRLLTTVGFMYVLLDSAWLLAVPTVVKSPGVVIAHHAATLLVLLDPLLSPSHSVYTSACLLVEINTLLLLLRRKMSYSVLVEVPFIISWVLLRNVWYPLLMFFFILCSAPGTLGPLFPRAMVEARRRIEGPEAVPMRFVSMVSWTAVCVLQLKWT 235          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A7S4PA72_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PA72_GUITH)

HSP 1 Score: 159 bits (403), Expect = 2.160e-42
Identity = 90/216 (41.67%), Postives = 127/216 (58.80%), Query Frame = 1
Query:   40 AARVHDDANLVVLAIMALMAAWSMWKQDSWTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCAFPESLTPIYPEPL---VKWRESVEGERGPQMFLG-SYLAWVGICLFQGWWSCALARTY----SRPSP----REKKFL 651
            A+ +HD+ NL+ L ++   A  ++  QD      LT     Y++LD+ WI   P  VKSP  V  HH+ATLLVL+DPL  P+H +YT+  LLVE NTLLL+LRRRV++   +E+PF L+WV LR  WYP L FYF +C  P +  P+ P  L   ++ R  +E  R P   +G S L+W  +C+FQ +W+  L   +     R  P    +EKK+L
Sbjct:   67 ASDLHDNVNLIALFLLGGGAIAALALQDRNMHDLLTVSGFVYILLDSVWIFSQPKIVKSPGMVGSHHIATLLVLLDPLLQPKHRVYTSACLLVEINTLLLLLRRRVSYSAIVEVPFILTWVLLRNIWYPLLMFYFFLCFSPSTFIPLLPSSLSWVIEMRTKIE-LRNPVPMMGVSLLSWAMVCIFQFYWTAQLFSAHPWIWGRRKPTANGKEKKYL 281          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A7S2V1S4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S4_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.010e-37
Identity = 80/208 (38.46%), Postives = 122/208 (58.65%), Query Frame = 1
Query:   34 GW----AARVHDDANLVVLAIMALMAAWSMWKQDSWTQYA--LTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHP-----QHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCAFPESLTPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWSCALARTYSR 624
            GW     + +HD  NLV L ++A +A   +    +       +T     Y+ LDA WI   P+ +KSP TV  HH++TL +L+ P+F+          YTA A++VE NT+LL +RR+  +G ++EIPFALSWV +RL WYP L FYF +CAF      + P+ ++  RE++EG     ++  S +A+V IC+FQ +WS  L +++ R
Sbjct:   37 GWNPSKLSELHDSINLVWLTVLASLAIVVLLSFPTCHSLLVLMTTLTTVYIALDAIWIFMFPSSIKSPVTVCLHHISTLAILLGPIFNAISGSGLQGYYTAAAIIVEANTVLLTMRRKFKFGLWVEIPFALSWVLIRLVWYPILGFYFMVCAFHSVRELLAPQFILHIRETIEGPEPEPLWKLSAMAFVLICMFQIFWSVPLVKSWMR 244          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A7S2B6S7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6S7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.370e-26
Identity = 65/189 (34.39%), Postives = 105/189 (55.56%), Query Frame = 1
Query:   40 AARVHDDANLVVLAIMALMAAWSMWKQDSWTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCAFPESLTPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWSCAL 606
            AA +HD+ N+V+ +++   AA+S+          +T  A  Y++ D  W++  P  VKSP  ++ HH+ TL VL DP+    H  Y +CALLVE NT+L+ LRRR+    + E+ F  +W+ALRL W+P L+++F   +FPE    ++  P       +  E  P +   + + +  I L Q +W+ AL
Sbjct:   11 AADLHDNINVVITSLIFFSAAFSLAGLPP-GHTVVTFGATAYIIFDIVWVMSQPRIVKSPVEIILHHLGTLAVLYDPITVLNHQKYASCALLVEVNTVLITLRRRLGRPMWCEVSFLATWLALRLIWFPCLSYWFLCSSFPE----VFVMPF-----GIARENNPPIDTSTTVFFCLIVLLQFYWTFAL 189          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A812KK43_9DINO (NMA1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812KK43_9DINO)

HSP 1 Score: 105 bits (263), Expect = 1.900e-22
Identity = 68/193 (35.23%), Postives = 101/193 (52.33%), Query Frame = 1
Query:   40 AARVHDDANLVVL-AIMALMAAWSMWKQDSWTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCAFP-ESLTPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWSCALAR 612
            A  +HD  N+  L AI AL AA     ++S     +    A Y+V DA WI   P  VK+P +V+ HH+ TL+V+V+P+F+  H +  + ALLVE NT+LL LRR +    + E+ F L+W  +RL W+P L        F   S     P PL      V   R P +   + L++  + + Q +W+CA+ R
Sbjct:   16 AGLLHDWVNVAALTAIFALSAAALESGEESSLHTIVIAVTAAYLVSDALWIALQPDMVKTPVSVILHHLVTLIVIVEPMFYESHRVNASRALLVEINTVLLTLRRLLGRPAWCELGFYLTWAVIRLIWFPALGTALLASTFGWTSPLAALPPPLTALVVEV---RPPAIRSYASLSFAAVVMLQFYWTCAMGR 205          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A812JJT5_9DINO (Nicotinamide-nucleotide adenylyltransferase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812JJT5_9DINO)

HSP 1 Score: 106 bits (265), Expect = 4.400e-21
Identity = 69/193 (35.75%), Postives = 101/193 (52.33%), Query Frame = 1
Query:   40 AARVHDDANLVVL-AIMALMAAWSMWKQDSWTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCAFP-ESLTPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWSCALAR 612
            A  +HD  N+  L AI AL AA     ++S     +    A Y+V DA WI   P  VK+P +V+ HH+ TL+V+V+P+F+  H +  + ALLVE NT+LL LRR +    + E+ F L+W  +RL W+P L        F   S     P PL      V   R P +   + L++  + L Q +W+CA+ R
Sbjct:   16 AGLLHDWVNVAALTAIFALSAAALESGEESSLHTIVIAVTAAYLVSDALWIALQPDMVKTPVSVILHHLVTLIVIVEPMFYESHRVNASRALLVEINTVLLTLRRLLGRPAWCELGFYLTWAVIRLIWFPALGTALLASTFGWTSPLAALPPPLTALVVEV---RPPAIRSYASLSFAAVVLLQFYWTCAMGR 205          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A7S0ASE2_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ASE2_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 4.680e-19
Identity = 62/193 (32.12%), Postives = 102/193 (52.85%), Query Frame = 1
Query:   52 HDDANLVVLAIMALMAAWSMWK-QDSWTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCA----FPESLTPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWSCALART 615
            HD  N+V L ++  MA+ S+W  +DS     +  F + Y+V D  W+   PA V++P +++ HHV TL+V+   + +  H +  + ALLVE NT+LL LRRR+    + E  F  +W  LRL W+P L+   AM A    F + L    P  L+     V+    P +   + +++  + + Q +W+  L R+
Sbjct:   28 HDWVNVVTLCLIFAMASASLWSGEDSLGHTMVVVFTSTYLVCDIVWVTLQPAIVRTPGSIVAHHVVTLVVIYGTVENVTHRVNASRALLVEINTVLLTLRRRLGRPVWCEAAFYATWGLLRLVWFPILSV--AMLASTFGFADQLRASMPACLL-----VDVRSPPPIKAYASISFAAVVVLQYYWTFTLLRS 213          
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Match: A0A813G2R2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G2R2_POLGL)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-18
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   40 AARVHDDANLVVLAIMALMAAWSMWK-QDS-WTQYALTQFAAGYMVLDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVEFNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFL 432
            A  VHD  N+ VL+++ ++A+  +   +DS W   A+    A Y+  D  WI  NP+ VK+PK +L HH  TL+V++D +    H    + AL+VE NT+LL LRR +    + EI F L+WV +RL W+P L
Sbjct:   34 AGLVHDWVNIGVLSLVFVLASIGILSGEDSVWHTVAIAVMCA-YLAGDVVWIAVNPSMVKTPKAILAHHAVTLIVIMDTIESASHRANASHALIVEINTVLLTLRRILGRPLWCEIGFYLTWVGIRLVWFPAL 165          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10292.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5K3_9PHAE1.620e-11777.93TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z8V7_9STRA1.960e-6758.38TLC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S0VYL2_9CRYP5.000e-4539.20Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S4PA72_GUITH2.160e-4241.67Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A7S2V1S4_9STRA2.010e-3738.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2B6S7_9STRA3.370e-2634.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812KK43_9DINO1.900e-2235.23NMA1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A812JJT5_9DINO4.400e-2135.75Nicotinamide-nucleotide adenylyltransferase n=2 Ta... [more]
A0A7S0ASE2_9DINO4.680e-1932.12Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A813G2R2_POLGL1.120e-1839.85Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10292contigF-distichus_contig10292:2654..6024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.1
Seed ortholog evalue1.9e-94
Seed eggNOG ortholog2880.D8LSQ8
Hectar predicted targeting categoryother localisation
EggNOG OGs2E7M6@1,2SE6N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1241
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10292.258.1prot_F-distichus_contig10292.258.1Fucus distichus monoicouspolypeptideF-distichus_contig10292 2675..5437 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.4045482-UTR-F-distichus_contig10292:2653..26741622928946.4045482-UTR-F-distichus_contig10292:2653..2674Fucus distichus monoicousUTRF-distichus_contig10292 2654..2674 +
1690885077.5194476-UTR-F-distichus_contig10292:2653..26741690885077.5194476-UTR-F-distichus_contig10292:2653..2674Fucus distichus monoicousUTRF-distichus_contig10292 2654..2674 +
1622928946.473986-UTR-F-distichus_contig10292:5437..60241622928946.473986-UTR-F-distichus_contig10292:5437..6024Fucus distichus monoicousUTRF-distichus_contig10292 5438..6024 +
1690885077.5760164-UTR-F-distichus_contig10292:5437..60241690885077.5760164-UTR-F-distichus_contig10292:5437..6024Fucus distichus monoicousUTRF-distichus_contig10292 5438..6024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.4201095-CDS-F-distichus_contig10292:2674..27691622928946.4201095-CDS-F-distichus_contig10292:2674..2769Fucus distichus monoicousCDSF-distichus_contig10292 2675..2769 +
1690885077.5308695-CDS-F-distichus_contig10292:2674..27691690885077.5308695-CDS-F-distichus_contig10292:2674..2769Fucus distichus monoicousCDSF-distichus_contig10292 2675..2769 +
1622928946.4325624-CDS-F-distichus_contig10292:3531..36461622928946.4325624-CDS-F-distichus_contig10292:3531..3646Fucus distichus monoicousCDSF-distichus_contig10292 3532..3646 +
1690885077.5395682-CDS-F-distichus_contig10292:3531..36461690885077.5395682-CDS-F-distichus_contig10292:3531..3646Fucus distichus monoicousCDSF-distichus_contig10292 3532..3646 +
1622928946.4453645-CDS-F-distichus_contig10292:4669..48571622928946.4453645-CDS-F-distichus_contig10292:4669..4857Fucus distichus monoicousCDSF-distichus_contig10292 4670..4857 +
1690885077.549163-CDS-F-distichus_contig10292:4669..48571690885077.549163-CDS-F-distichus_contig10292:4669..4857Fucus distichus monoicousCDSF-distichus_contig10292 4670..4857 +
1622928946.4621632-CDS-F-distichus_contig10292:5202..54371622928946.4621632-CDS-F-distichus_contig10292:5202..5437Fucus distichus monoicousCDSF-distichus_contig10292 5203..5437 +
1690885077.559143-CDS-F-distichus_contig10292:5202..54371690885077.559143-CDS-F-distichus_contig10292:5202..5437Fucus distichus monoicousCDSF-distichus_contig10292 5203..5437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10292.258.1

>prot_F-distichus_contig10292.258.1 ID=prot_F-distichus_contig10292.258.1|Name=mRNA_F-distichus_contig10292.258.1|organism=Fucus distichus monoicous|type=polypeptide|length=211bp
MYVDGWAARVHDDANLVVLAIMALMAAWSMWKQDSWTQYALTQFAAGYMV
LDACWILCNPAGVKSPKTVLGHHVATLLVLVDPLFHPQHALYTACALLVE
FNTLLLILRRRVAWGRYLEIPFALSWVALRLAWYPFLAFYFAMCAFPESL
TPIYPEPLVKWRESVEGERGPQMFLGSYLAWVGICLFQGWWSCALARTYS
RPSPREKKFL*
back to top

mRNA from alignment at F-distichus_contig10292:2654..6024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10292.258.1 ID=mRNA_F-distichus_contig10292.258.1|Name=mRNA_F-distichus_contig10292.258.1|organism=Fucus distichus monoicous|type=mRNA|length=3371bp|location=Sequence derived from alignment at F-distichus_contig10292:2654..6024+ (Fucus distichus monoicous)
AGCAAGTCTCTGATCCCCACGATGTACGTGGACGGGTGGGCTGCTCGGGT GCACGACGACGCGAATCTGGTGGTGCTGGCGATCATGGCTCTGATGGCCG CGTGGTCCATGTGGAAGTGAGTGCTCGTGCCAAACACACCAGGTGTACTT GACAAATAGTCATACTCTTCCCGAATAGCTGGTCTAGAGCCGGGTTTTTG CCTGGGGAAGCGGAAGGTGTGTGGTACTCGACACGGACGACGCCGCTCGA ACGACATGGGGTGTACTTGTACCTTCCTCCTCCTGGAATAATGCTCTGTT TTACTATTTCATATTATACCTGTTGATAGTGATCTACACAAGCACACACG GGTATGAATAATGTGATGCTGTCTGAGCGTGCACGCTCGTGTGTATGATT TGTTTATTTATAAAATTGCTCATAGTCGGTGGGTGGGGTGTCCATGTGGC ATAGGTCCACCCGTCAGTCGCCTAAAACAAAAAAATGGTGCTTGGTAAAA CAATACATCGTTAAAGGAGATGGCTATACTGTCATATTAATAGTTATATT CTGTCTGGGTTGTTGCCGTCCGCCAGGGGAGCGCTGCACAGGTTTTCCAC CTTGAAGTCTTCGAAGGCACGAGCAAATCGCCGTAACCGTGCTTTAAAAG TTGGCACGAAGTGATTACGAAGGCCTTCTTAGGTCGACAAACGAGCGAGA ATTACCCAGGGTCCTCAAAGCGCAGGAGGCGAGGTCACGAAGGATACGCC CATGGCCATCGCGCAAACGTCGAAATGCTTCTATTAATACGTTGCTTCGC ATTAACAAACCACCGATTGCCCCCCCCCCCCTCCCTCTCTTTCGAAAAAA CGTGGAAAACCATGGCACGGACGAGCAGGCAAGACTCGTGGACACAGTAC GCGCTGACGCAGTTCGCGGCGGGTTACATGGTGCTGGACGCCTGTTGGAT CTTGTGCAATCCAGCTGGCGTCAAGTCTCCAAAAACTGTGCTGGTGAGTC GCGCGGATTTGATTGGATAGTTGGATAGTGTAGTGTTAACCATCAAGGGA TTTTCCTCTTTTGCAAAGAAAGACCGCGGGATTTTTTTATTTTTTTTTGG GAGTGGATCTTTTAGTTCTCTTTTGCTTATATCGGCGTAAAGAGCCACAC TACTATTATACGAGCACGCTTGTCGGTGATGGGGTAGCGTCCACGCACGT GGTGAGGTCTTCGACTAACCCCCCCCCCTCCTATGATACCGCTTGCTTGC CATCAACAACCGCATTGGGCCACCCTCCCCTTAGGGAGACTCTCAAACCA AACGTACTTTGATTCGACAGAATCAGAACAGACAAATTTATCTCCGTTGT TTTCGGGGACGGGATGACGCCAGGGGCACCTCTTCTTGATAAAAGTGATT ACTATACCTGTACTGTACCTAGTACGCCTTACTGCCGGCTGCTGTTAAGG CCGTAAGTCTATTGTGTCTGTTGTCCGCAAGGAGATATGGAGGGCTATTA AGGGGGGTTACTGTAGCTGGTATACTTTACCGCCGACTACTGTTGAGACC GTAAGGTCATGCCTACTGAACACAAGGAGATAGGGGGGGAACGAACTAAA CATTGTTGAGATTTCGTTGGTGGTGATGGGAACGGGGGTGACGCCAAAAA TCGACCGCGACAGCATAGGCTCTGCTGTTTTTCGTGCCAAGAGACCCCGT GGTGGAAAATTCCTCATTTCTGGGAGAGGGAGATTGTAGACGCCAGGGGT ACTCGTCCAAAGCGCAAGTGACTCTAGCAACCCTTTTGCTTATTGATAGA CTATACCTTCGGCTAATTTTTATTCTGGTCTAGTATATCATTTGTGTGTT TGATGGACAACGGGGTGAAGACAACCATAGTTTCCCCCCTGAATTGCTTT CACCAGGGGATAGGGTCAACTGACACCTGTGGTACCCGATTGTGGGATTA CTTTCACTTGTTCCCCCTTAATAAAAACCATCCCTACCGCCTCCTGTCCT GTACGAAAACTTGCAGGGGCACCACGTGGCGACACTGCTGGTGCTGGTAG ACCCCCTCTTTCATCCTCAGCACGCCCTTTACACGGCGTGCGCGCTGCTA GTGGAGTTCAACACCTTGCTGCTCATTCTCCGCCGCAGGGTGGCGTGGGG GCGGTACCTTGAGATACCGTTTGCACTGTCCTGGGTGGCGTTACGGTTAG CCTGGTGAGGCTCCTTCCCCGCGCGCGGAACAGAGTAAAGATTCTGATGT ATGGAATGACAAGCACATCAGTCACCCGACCGGAGTTTTTGGTCCGTTTC CACGGATCCTGATGGCCCGCTTCTACTCCGCGTATCCTCGGTAGGGTAAA TGGAAAGGAGTGGAAATTGCACAAACAATAAGGAGAAATGCGGGGTTCCC ATAGAGCGGGTGGCTTTTTTTACAAGGATGAGTATTTCGTCTGAGGGGTG GAAGCTTTGTACACGCGTCAATAGCTCCTTTCTCTGAATTTTTTTTTGTA AACATGGCCGGTTGTGATCCGTCCTCTGCCCCCCCCCCCCCCTTTGCAGG TATCCCTTCCTGGCCTTCTACTTTGCAATGTGCGCATTCCCGGAATCGCT CACTCCCATCTACCCAGAGCCGCTGGTGAAGTGGCGCGAGTCCGTAGAGG GCGAGCGCGGACCTCAGATGTTTCTCGGAAGTTATCTCGCGTGGGTGGGC ATCTGCCTGTTCCAGGGGTGGTGGTCTTGCGCCCTCGCGAGGACCTACAG CCGACCCTCCCCACGGGAAAAAAAATTCCTGTAATTTCCCCCGCGGGCTG TTTGGCCGCCGTAACGATTAGTGCCTGTCGACGCTATTGGTTCCCGCGAT CGCGCTGGAATGGACGGTAGATGCTGAGGATATGCCTCCATGGAAATCCT TCCTTTGAAACCCCTTGCATATTATAAACTCGAAAGTGACTTTTATCGAT GGTTTGTGCGCGTGAGTGTTGGTGGTAACTGTATGTGGTGCTTGACTCCG TCCGGTGAAGGAGAGGCAACGAGTTTGCGATGTGTCGCTCCTCACGAGTG TCGACCGGCGTTTCCGGGCGGTTGGCGCTCTCGACGGATCGTAGCCGATC GGATGAATAAGGTTTTTACGAGAGCCTGGGAAGCCGTTCGAAAGGAATCG ATGAGGGGCCACGAAAAGCGCGCCAACAACAGAGACTTGAACTCGGAAGG CCTTTTCTGAAGCCTAGAGACATATTTTAGTGGTATAATAGGTGGAAGCA CTTGACTGTGGGGGAACGAATGAGGAAAGGTAGAGGCGTGTAGCGGACGG CGGGAGGCAGTGGCGGGGAGGCTTGAGCTCCAACAAGGGCAATGGCGAAG AACAGCAGAAACAATCAGTTT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig10292:2654..6024+

>mRNA_F-distichus_contig10292.258.1 ID=mRNA_F-distichus_contig10292.258.1|Name=mRNA_F-distichus_contig10292.258.1|organism=Fucus distichus monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at F-distichus_contig10292:2654..6024+ (Fucus distichus monoicous)
ATGTACGTGGACGGGTGGGCTGCTCGGGTGCACGACGACGCGAATCTGGT
GGTGCTGGCGATCATGGCTCTGATGGCCGCGTGGTCCATGTGGAAATGTA
CGTGGACGGGTGGGCTGCTCGGGTGCACGACGACGCGAATCTGGTGGTGC
TGGCGATCATGGCTCTGATGGCCGCGTGGTCCATGTGGAAGCAAGACTCG
TGGACACAGTACGCGCTGACGCAGTTCGCGGCGGGTTACATGGTGCTGGA
CGCCTGTTGGATCTTGTGCAATCCAGCTGGCGTCAAGTCTCCAAAAACTG
TGCTGGCAAGACTCGTGGACACAGTACGCGCTGACGCAGTTCGCGGCGGG
TTACATGGTGCTGGACGCCTGTTGGATCTTGTGCAATCCAGCTGGCGTCA
AGTCTCCAAAAACTGTGCTGGGGCACCACGTGGCGACACTGCTGGTGCTG
GTAGACCCCCTCTTTCATCCTCAGCACGCCCTTTACACGGCGTGCGCGCT
GCTAGTGGAGTTCAACACCTTGCTGCTCATTCTCCGCCGCAGGGTGGCGT
GGGGGCGGTACCTTGAGATACCGTTTGCACTGTCCTGGGTGGCGTTACGG
TTAGCCTGGGGCACCACGTGGCGACACTGCTGGTGCTGGTAGACCCCCTC
TTTCATCCTCAGCACGCCCTTTACACGGCGTGCGCGCTGCTAGTGGAGTT
CAACACCTTGCTGCTCATTCTCCGCCGCAGGGTGGCGTGGGGGCGGTACC
TTGAGATACCGTTTGCACTGTCCTGGGTGGCGTTACGGTTAGCCTGGTAT
CCCTTCCTGGCCTTCTACTTTGCAATGTGCGCATTCCCGGAATCGCTCAC
TCCCATCTACCCAGAGCCGCTGGTGAAGTGGCGCGAGTCCGTAGAGGGCG
AGCGCGGACCTCAGATGTTTCTCGGAAGTTATCTCGCGTGGGTGGGCATC
TGCCTGTTCCAGGGGTGGTGGTCTTGCGCCCTCGCGAGGACCTACAGCCG
ACCCTCCCCACGGGAAAAAAAATTCCTGTAAGTATCCCTTCCTGGCCTTC
TACTTTGCAATGTGCGCATTCCCGGAATCGCTCACTCCCATCTACCCAGA
GCCGCTGGTGAAGTGGCGCGAGTCCGTAGAGGGCGAGCGCGGACCTCAGA
TGTTTCTCGGAAGTTATCTCGCGTGGGTGGGCATCTGCCTGTTCCAGGGG
TGGTGGTCTTGCGCCCTCGCGAGGACCTACAGCCGACCCTCCCCACGGGA
AAAAAAATTCCTGTAA
back to top