mRNA_F-distichus_contig10289.255.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10289.255.1
Unique NamemRNA_F-distichus_contig10289.255.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10289.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10289contigF-distichus_contig10289:3616..4057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10289.255.1prot_F-distichus_contig10289.255.1Fucus distichus monoicouspolypeptideF-distichus_contig10289 3619..3975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.0905352-UTR-F-distichus_contig10289:3615..36181622928946.0905352-UTR-F-distichus_contig10289:3615..3618Fucus distichus monoicousUTRF-distichus_contig10289 3616..3618 +
1690885077.3488638-UTR-F-distichus_contig10289:3615..36181690885077.3488638-UTR-F-distichus_contig10289:3615..3618Fucus distichus monoicousUTRF-distichus_contig10289 3616..3618 +
1622928946.1247122-UTR-F-distichus_contig10289:3975..40571622928946.1247122-UTR-F-distichus_contig10289:3975..4057Fucus distichus monoicousUTRF-distichus_contig10289 3976..4057 +
1690885077.370204-UTR-F-distichus_contig10289:3975..40571690885077.370204-UTR-F-distichus_contig10289:3975..4057Fucus distichus monoicousUTRF-distichus_contig10289 3976..4057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.111299-CDS-F-distichus_contig10289:3618..39751622928946.111299-CDS-F-distichus_contig10289:3618..3975Fucus distichus monoicousCDSF-distichus_contig10289 3619..3975 +
1690885077.359398-CDS-F-distichus_contig10289:3618..39751690885077.359398-CDS-F-distichus_contig10289:3618..3975Fucus distichus monoicousCDSF-distichus_contig10289 3619..3975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10289.255.1

>prot_F-distichus_contig10289.255.1 ID=prot_F-distichus_contig10289.255.1|Name=mRNA_F-distichus_contig10289.255.1|organism=Fucus distichus monoicous|type=polypeptide|length=119bp
MACLATAHQWSRAASVDPTGRSDLNPRPGDQSVALGRGWRERGCIATRYH
QTSFEIRVKNVVVGSSATHRKTHGIDIANLNQFPNNKQSSHYKYFTPRPH
NFYKANPIRPQDRIHHHT*
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mRNA from alignment at F-distichus_contig10289:3616..4057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10289.255.1 ID=mRNA_F-distichus_contig10289.255.1|Name=mRNA_F-distichus_contig10289.255.1|organism=Fucus distichus monoicous|type=mRNA|length=442bp|location=Sequence derived from alignment at F-distichus_contig10289:3616..4057+ (Fucus distichus monoicous)
ATAATGGCGTGTCTAGCAACCGCCCATCAATGGTCACGTGCAGCTTCAGT
AGATCCGACAGGCCGTTCCGACTTAAACCCACGCCCGGGGGATCAGTCCG
TAGCCCTTGGTCGTGGATGGCGAGAGCGCGGCTGCATTGCAACTCGGTAT
CATCAGACTTCCTTTGAAATACGAGTAAAAAATGTCGTGGTGGGAAGCTC
GGCGACACACAGGAAGACACACGGGATAGATATTGCAAACCTGAACCAGT
TCCCAAATAATAAACAATCAAGTCACTATAAATATTTTACACCAAGGCCG
CATAATTTTTACAAGGCTAACCCTATCCGTCCACAGGATCGAATCCACCA
CCACACTTGATGCGCCGGAGTCCTTTGAGATACAAGCGTCCCCACGCGAC
TGCCTTCCAGTCGTAATGGATCCAAAGCGTAGTTTGGAAGTT
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Coding sequence (CDS) from alignment at F-distichus_contig10289:3616..4057+

>mRNA_F-distichus_contig10289.255.1 ID=mRNA_F-distichus_contig10289.255.1|Name=mRNA_F-distichus_contig10289.255.1|organism=Fucus distichus monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at F-distichus_contig10289:3616..4057+ (Fucus distichus monoicous)
ATGGCGTGTCTAGCAACCGCCCATCAATGGTCACGTGCAGCTTCAGTAGA
TCCGACAGGCCGTTCCGACTTAAACCCACGCCCGGGGGATCAGTCCGTAG
CCCTTGGTCGTGGATGGCGAGAGCGCGGCTGCATTGCAACTCGGTATCAT
CAGACTTCCTTTGAAATACGAGTAAAAAATGTCGTGGTGGGAAGCTCGGC
GACACACAGGAAGACACACGGGATAGATATTGCAAACCTGAACCAGTTCC
CAAATAATAAACAATCAAGTCACTATAAATATTTTACACCAAGGCCGCAT
AATTTTTACAAGGCTAACCCTATCCGTCCACAGGATCGAATCCACCACCA
CACTTGAATGGCGTGTCTAGCAACCGCCCATCAATGGTCACGTGCAGCTT
CAGTAGATCCGACAGGCCGTTCCGACTTAAACCCACGCCCGGGGGATCAG
TCCGTAGCCCTTGGTCGTGGATGGCGAGAGCGCGGCTGCATTGCAACTCG
GTATCATCAGACTTCCTTTGAAATACGAGTAAAAAATGTCGTGGTGGGAA
GCTCGGCGACACACAGGAAGACACACGGGATAGATATTGCAAACCTGAAC
CAGTTCCCAAATAATAAACAATCAAGTCACTATAAATATTTTACACCAAG
GCCGCATAATTTTTACAAGGCTAACCCTATCCGTCCACAGGATCGAATCC
ACCACCACACTTGA
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