mRNA_F-distichus_contig102882.254.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102882.254.1
Unique NamemRNA_F-distichus_contig102882.254.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: D7FXX2_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.160e-19
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 IDHLLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMHYIGSR 165
            ID LL+E+ L KY+ VFR+AEVDL  LCIMSE+D  ++GILKGPRVKIMH+IGSR
Sbjct:   97 IDELLDEIGLMKYVDVFREAEVDLATLCIMSEQDFRELGILKGPRVKIMHHIGSR 151          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: A0A6H5L4F3_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.530e-19
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 IDHLLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMHYIGSR 165
            ID LL+E+ L KYL VFR+AEVDL  LCIMSE+D  ++GILKGPRVKIMH+IGSR
Sbjct:  195 IDELLDEIGLIKYLDVFREAEVDLATLCIMSEQDFRELGILKGPRVKIMHHIGSR 249          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: A0A6J0SZH9_9SAUR (phospholipase DDHD2 isoform X1 n=2 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SZH9_9SAUR)

HSP 1 Score: 60.5 bits (145), Expect = 2.960e-9
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 IDHLLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMHYIGSR 165
            +  +L EL LS+Y SVF   EVD  AL + +EK+L D+GI  GPR+KI+HYI S+
Sbjct:  387 VKDVLTELELSEYCSVFEKEEVDSQALALCTEKELRDMGIPLGPRMKILHYIKSK 441          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: UPI000A2A5085 (ankyrin repeat domain-containing protein 17 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5085)

HSP 1 Score: 60.5 bits (145), Expect = 2.990e-9
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 IDHLLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMH 150
            +  LLE LSLS +LS+F+  E+DL AL +MSEKD  DIG+ KGPRVK+++
Sbjct: 2027 LQSLLERLSLSSHLSLFQKNEIDLDALLLMSEKDYSDIGLPKGPRVKLLN 2076          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: A0A8D0HGH4_SPHPU (SAM domain-containing protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0HGH4_SPHPU)

HSP 1 Score: 56.6 bits (135), Expect = 4.070e-9
Identity = 25/56 (44.64%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 IDHLLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMHYIGSRR 168
            +  +L++L LS+Y SVF   +VD  AL + ++K+L ++GI  GPRVKI+HYI +++
Sbjct:   27 VKDILKKLELSEYYSVFEKEQVDRQALALCTDKELKEMGIPLGPRVKILHYIRNKK 82          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.930e-8
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   10 LLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMHYIGSR 165
            +L+ + L KY   F + EVDL AL +MSE DL DIGI KGPR+KI++ +G+R
Sbjct:  575 VLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGAR 626          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: H9G5V9_ANOCA (Uncharacterized protein n=4 Tax=Iguania TaxID=8511 RepID=H9G5V9_ANOCA)

HSP 1 Score: 58.2 bits (139), Expect = 1.930e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   10 LLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMHYIGSR 165
            +L EL LS+Y SVF   EVD  AL + +EK+L D+GI  GPR+KI+HY+ ++
Sbjct:  387 ILTELELSEYCSVFEKEEVDRQALALCTEKELKDMGIPLGPRMKILHYLRNK 438          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: A0A2B4RXF2_STYPI (Ankyrin repeat domain-containing protein 17 n=6 Tax=Scleractinia TaxID=6125 RepID=A0A2B4RXF2_STYPI)

HSP 1 Score: 58.2 bits (139), Expect = 1.950e-8
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   13 LEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMH 150
            LE LSLS +LS+F+  E+DL AL +MSEKD  DIG+ KGPRVK+++
Sbjct: 2013 LERLSLSSHLSLFQKNEIDLDALLLMSEKDYADIGLPKGPRVKLLN 2058          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: UPI0018E8C551 (phospholipase DDHD2 isoform X3 n=2 Tax=Dermochelys coriacea TaxID=27794 RepID=UPI0018E8C551)

HSP 1 Score: 57.8 bits (138), Expect = 2.640e-8
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 IDHLLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMHYIGSR 165
            +   L++L LS+Y SVF    +D+ AL + +EKDL D+GI  GPR+KI+HYI ++
Sbjct:  356 VKETLKKLELSEYCSVFEKERLDMQALALCTEKDLKDMGIPLGPRMKILHYIRTK 410          
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Match: A0A7L2H065_NYCGR (DDHD2 Phospholipase (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L2H065_NYCGR)

HSP 1 Score: 57.8 bits (138), Expect = 2.640e-8
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 IDHLLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMHYIGSR 165
            I  +L+EL LS+Y  VF   E+D  AL + +EK+L ++GI  GPR+KI+HYI S+
Sbjct:  381 IKEILQELELSEYCGVFEKEEMDRQALFLCTEKNLKEMGIPLGPRMKILHYISSK 435          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102882.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXX2_ECTSI1.160e-1970.91SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4F3_9PHAE4.530e-1972.73SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6J0SZH9_9SAUR2.960e-952.73phospholipase DDHD2 isoform X1 n=2 Tax=Pogona vitt... [more]
UPI000A2A50852.990e-958.00ankyrin repeat domain-containing protein 17 n=1 Ta... [more]
A0A8D0HGH4_SPHPU4.070e-944.64SAM domain-containing protein n=1 Tax=Sphenodon pu... [more]
D7FQB1_ECTSI1.930e-853.85SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
H9G5V9_ANOCA1.930e-851.92Uncharacterized protein n=4 Tax=Iguania TaxID=8511... [more]
A0A2B4RXF2_STYPI1.950e-860.87Ankyrin repeat domain-containing protein 17 n=6 Ta... [more]
UPI0018E8C5512.640e-847.27phospholipase DDHD2 isoform X3 n=2 Tax=Dermochelys... [more]
A0A7L2H065_NYCGR2.640e-849.09DDHD2 Phospholipase (Fragment) n=2 Tax=Neognathae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102882contigF-distichus_contig102882:1064..1234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.0525758-CDS-F-distichus_contig102882:1063..12341622928946.0525758-CDS-F-distichus_contig102882:1063..1234Fucus distichus monoicousCDSF-distichus_contig102882 1064..1234 +
1690885077.3385324-CDS-F-distichus_contig102882:1063..12341690885077.3385324-CDS-F-distichus_contig102882:1063..1234Fucus distichus monoicousCDSF-distichus_contig102882 1064..1234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102882.254.1prot_F-distichus_contig102882.254.1Fucus distichus monoicouspolypeptideF-distichus_contig102882 1064..1234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102882.254.1

>prot_F-distichus_contig102882.254.1 ID=prot_F-distichus_contig102882.254.1|Name=mRNA_F-distichus_contig102882.254.1|organism=Fucus distichus monoicous|type=polypeptide|length=57bp
IDHLLEELSLSKYLSVFRDAEVDLPALCIMSEKDLHDIGILKGPRVKIMH
YIGSRR*
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mRNA from alignment at F-distichus_contig102882:1064..1234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102882.254.1 ID=mRNA_F-distichus_contig102882.254.1|Name=mRNA_F-distichus_contig102882.254.1|organism=Fucus distichus monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at F-distichus_contig102882:1064..1234+ (Fucus distichus monoicous)
ATCGATCACCTTCTGGAAGAGCTTAGCCTGTCCAAGTACTTATCGGTGTT CCGGGATGCGGAGGTGGACCTGCCGGCGCTCTGCATCATGTCGGAGAAGG ACTTGCACGACATTGGCATCCTCAAGGGACCTCGAGTCAAGATCATGCAC TACATCGGCTCGCGCCGCTGA
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Coding sequence (CDS) from alignment at F-distichus_contig102882:1064..1234+

>mRNA_F-distichus_contig102882.254.1 ID=mRNA_F-distichus_contig102882.254.1|Name=mRNA_F-distichus_contig102882.254.1|organism=Fucus distichus monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at F-distichus_contig102882:1064..1234+ (Fucus distichus monoicous)
ATCGATCACCTTCTGGAAGAGCTTAGCCTGTCCAAGTACTTATCGGTGTT
CCGGGATGCGGAGGTGGACCTGCCGGCGCTCTGCATCATGTCGGAGAAGG
ACTTGCACGACATTGGCATCCTCAAGGGACCTCGAGTCAAGATCATGCAC
TACATCGGCTCGCGCCGCTGAATCGATCACCTTCTGGAAGAGCTTAGCCT
GTCCAAGTACTTATCGGTGTTCCGGGATGCGGAGGTGGACCTGCCGGCGC
TCTGCATCATGTCGGAGAAGGACTTGCACGACATTGGCATCCTCAAGGGA
CCTCGAGTCAAGATCATGCACTACATCGGCTCGCGCCGCTGA
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