mRNA_F-distichus_contig10287.251.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10287.251.1 vs. uniprot
Match: D7FSM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM2_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 7.800e-148 Identity = 230/364 (63.19%), Postives = 269/364 (73.90%), Query Frame = 1
Query: 541 ALRRVQGAAIGGNKLIGVCRISSAQLRAMGSSTVPADLAIRDPRLSWWSFKRGTIRVAVSLERLQANIVRATLHQSKVTM-----GVFRDTQQDGDEDEGLQPMEFFCKVLWNGKEFSSSDHWDKVFCLTEHNDQLRLDVRWVENRGHMLEQTRDADASEYWTGDRSCVLKLGKSFHLSTFDAQGLVDALNSGEESTERMAGTKASRGWHKQGFRLVWDAVRRRFTILNVSRRSFVLRGGSSSLATELLGFGARDYASQPVAEALVDPQHPSDPPRRHMAVTADSMPPPLLRPHWMRVVWGPPAMEIARGGEFRVQVWARQPMEQSGRVPSRRRRRRSSLSIAGAWYREDGSWLVGTALLDAAK 1617
ALRRVQGA IGG++LIGVCRISS++LR +GSSTVPADL +RDPR SWW RGTIR+AVSLERLQANI+RA L + ++ GV R + +E P E CKVLWNG +FSS WDKVFC+T N+QL LD+ ++ R A W G RSC+L +G ++HLSTFDAQGL D LNS E STERMAGTK WH +GFRL WD VRRRFTILNVSRRSFVLRGG SSLAT LLGF +D+ S+PVAEA++DPQHPSDPPRRHM +T D++P PLLRPHWMR+VWGPPAMEI RGGE RVQVW+RQP R RRRRRRS++ AG EDGS LVGTA+LD+A+
Sbjct: 27 ALRRVQGAVIGGDRLIGVCRISSSELRGLGSSTVPADLKLRDPRGSWWGSSRGTIRIAVSLERLQANIIRAALPPKRASVLGVPEGVTRTASSEAKGEEAAPPTELSCKVLWNGHDFSSPSRWDKVFCMTLANNQLWLDISAARPAARREQRRRAAVVENTWAGSRSCILTVGLAYHLSTFDAQGLADMLNSEETSTERMAGTKE---WHDKGFRLHWDPVRRRFTILNVSRRSFVLRGGCSSLATALLGFREKDHFSKPVAEAVLDPQHPSDPPRRHMGITGDTVPLPLLRPHWMRIVWGPPAMEITRGGELRVQVWSRQPTGPILRSQQRRRRRRSAIGCAG--QSEDGSSLVGTAVLDSAE 385
BLAST of mRNA_F-distichus_contig10287.251.1 vs. uniprot
Match: A0A6H5JHV6_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV6_9PHAE) HSP 1 Score: 366 bits (939), Expect = 8.250e-112 Identity = 273/772 (35.36%), Postives = 322/772 (41.71%), Query Frame = 1
Query: 4 VGATKPDRQTRRPEWNQNFQVRSDLFDSNTDKDSKXXXXXXXXXXXXXXXXDHHRSVSTSTYQCGCSRSAQNPGDCSRAGHRKVDAAAAGEGMEVGRGVDQERASAAKVCDACRAYHRRK--IEVVLEVWDRHTHTQEVDGCSEERGNGPSGGVDKTNNPDDLFDDRLFDLSFVSRCFQRVALRRVQGAAIGGNKLIGVCRISSAQLRAMGSSTVPADLAIRDPRLSWWSFKRGTIRVAVSLERLQANIVRATLHQSKVTM-----GVFRDTQQDGDEDEGLQPMEFFCKVLWNGKEFSSSDHWDKVFCLTEHNDQLRLDVRWV----------------------------------------------------------------------------------------------------------------------------------------ENRGHMLEQTRD--------------------ADASEY--------------------------------------------------------------------WTGDRSCVLKLGKSFHLSTFDAQGLVDALNSGEESTERMAGTKASRGWHKQGFRLVWDAVRRRFTILNVSRRSFVLRGGSSSLATELLGFGARDYASQPVAEALVDPQHPSDPPRRHMAVTADSMPPPLLRPHWMRVVWGPPAMEIARGGEFRVQVWARQPMEQSGRVPSRRRRRRSSLSIAGAWYREDGSWLVGTALLDAAKVCR 1626
VG TK DR TRRPEWNQNF +RSDL + T + D+ + +C CS A A GEG C A RR EVVLE+WD + GA IGG++LIGVCRISS++LR +GSSTVPADL +RDPR WW RGTIR+AVSLERLQANI+RA L ++ ++ GV R + +E P E CKVLWNG +FSS WDKVFC+T N+QL LD+R E R H E R A ASE W G RSC+L +G ++HLSTFDAQGL D LNS E+STERMAGTK WH++GFRL WD VRRRFTILNVSRRSFVLRG SSLAT LLGF +D+ S+PVAEA++DPQHPSDPPRRHM +T D++P PLLRPHWMR+VWGPPAMEI RGGE RVQVW+RQP + R RRRRRRSS+ AG EDG+ LVGTA+LD+A+V R
Sbjct: 65 VGCTKADRGTRRPEWNQNFLIRSDLAEPATALPRRDVGDVGDDMSNPDD--DYRQEPQGERNRCSCSAEA-----------------ATGEGGSAD----------------CEAEWRRGGVDEVVLELWDEY------------------------------------------------------GAVIGGDRLIGVCRISSSELRRLGSSTVPADLKLRDPRGLWWGSSRGTIRIAVSLERLQANIIRAALPPNRASVLGVPEGVTRTASGEAKGEETAPPTELSCKVLWNGHDFSSPSRWDKVFCMTAANNQLWLDIRAAPDLVNSAGLRPARSRKGPPPVDAVDGADVLVPPPEGHSTAVEGTAAAVRRSEAIAPVETVAXXXXXXXXXXXXXXXXXVVSPAGTPLETLESPAASPLSGQRQRXXXXXXXXXXXXXXXXXXGSEPARRISEREEGETREHKTEAARKGRRGARAIPSAGTPNPREDPAGASEEARSSSETAAAAVAPXXXXXXXXXXXXXXXXXXXXXXXXLEGVLAVARSAARPAARREHRRRAAVVDNTWAGSRSCILTVGLAYHLSTFDAQGLADMLNSEEKSTERMAGTKE---WHEKGFRLHWDPVRRRFTILNVSRRSFVLRGACSSLATALLGFREKDHFSKPVAEAVLDPQHPSDPPRRHMGITGDTVPLPLLRPHWMRIVWGPPAMEITRGGELRVQVWSRQPTGPTLRSLQRRRRRRSSIGCAG--QSEDGASLVGTAVLDSAEVSR 742
BLAST of mRNA_F-distichus_contig10287.251.1 vs. uniprot
Match: D7FSM1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSM1_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.260e-24 Identity = 100/251 (39.84%), Postives = 127/251 (50.60%), Query Frame = 1
Query: 1612 AKVCRVATGTPTRLPLFSPRALQEADPDRPTTTNRRSSNSSGALQA---------VFSFCHSIGYKGLDWVASI------VARQRQRLRRLKRRIVAKGLGAD---KCTAIGVGGAVVYWGPRSSILR---------------RSGRQGDAALTPSGWKGNDKHFVASPVEAKLRRVL-GGDPGVETPVSGESG--RAAPEKKPGVVGHVWVSLKLRDPSILVIRAIRQWNMARNEASVQQRRAAQLEAKR 2256
++VCR+ATG TRLPL SP AL + + + V + G+ W+A + +ARQRQRLRRLKRRI A G GA+ + T +G R+G G++ TP+G KH L R+ GGD +PV GE+G AA + GVVGHVWVSLKLRDPS+L++R +RQWNMAR+EASVQQRRAAQLEAKR
Sbjct: 39 SEVCRLATGKTTRLPLLSPSALWQYERSKSAXXXXXXXXXXXXXXXXXXXXXXXXVLPVANGAGF----WLAVVTAPRAFLARQRQRLRRLKRRIAAAG-GAENGYRTTPLGAXXXXXXXXXXXXXXXXXXXXXXXXSRRHGSRAGGPGESMATPTG---GGKHLRG---RGDLWRLASGGDTAAVSPVEGEAGPAAAAAAARGGVVGHVWVSLKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKR 278
BLAST of mRNA_F-distichus_contig10287.251.1 vs. uniprot
Match: A0A836CKS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS8_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 7.180e-17 Identity = 64/183 (34.97%), Postives = 84/183 (45.90%), Query Frame = 1
Query: 1009 WTGDRSCVLKLGKSFHLSTFDAQGLVDALNSGEESTERMAG----------------------TKASRGWHKQGFRLVWDAVRRRFTILNVSRR---SFVLRGGSSSLATELLGFGARDYASQPVAEALVDPQHPSDPPRRHMAVTADSMPPPLLRPHWMRVVWGPPAMEIARG-GEFRVQVW 1479
W +++G++ HLST+DAQGL DALN + GW G R WDA RRFT+ + +R +FVL G S+LA LLGF RDYAS +++A + R V D+ P PL P W VVWGP A+E+ R G V+VW
Sbjct: 527 WPRSEEVRVEVGRAMHLSTYDAQGLADALNGAAXXXXXXXXXXXXXXXXXXXXXXXXXRQNPIAEGFAGWRAAGLRCHWDARARRFTLYSTARAHVAAFVLHGARSTLAARLLGFAPRDYASA-LSDAPLPLGGDGGGAARCQCVVGDAAPAPLDSPKWFEVVWGPSALELLRAPGTLEVEVW 708
BLAST of mRNA_F-distichus_contig10287.251.1 vs. uniprot
Match: A0A836CAW7_9STRA (MULE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW7_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.870e-14 Identity = 75/234 (32.05%), Postives = 96/234 (41.03%), Query Frame = 1
Query: 1009 WTGDRSCVLKLGKSFHLSTFDAQGLVDALNSGEESTERMAG-----------------TKASR--------GWHKQGFRLVWD---------------------AVRRRFTILNVSR---RSFVLRGGSSSLATELLGFGARDYASQPVAEALVDPQHP-----SDPPRRHMAVTADSMPPPLLRPHWMRVVWGPPAMEIARG------------GEFRVQVWARQPMEQSGRV 1512
W +++G+ HLST+DAQGL DALN ST A T +R GW G R++ D A RRF + +R +FVLRG S+LAT+LLGF RD+AS AL D P R V +D PPL P W VVWGPPA+E+ R G+ V+VW ++ SG V
Sbjct: 806 WPRSEEVRVEVGRQMHLSTYDAQGLADALNGAGASTAAAAAAACPLGAGFDGWLGLTSTPGARQAYALGVSGWRAAGLRVLHDLTSNRSGFXXXXXXXXXXHYVAAARRFALYTTARDEVAAFVLRGARSTLATQLLGFSPRDHAS-----ALSDAPLPLGGDAGGAVARCQCVLSDMPLPPLESPKWFEVVWGPPALELLRSTMPPLPLPLPLNGQMNVEVWGQRSTAPSGAV 1034 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10287.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10287.251.1 >prot_F-distichus_contig10287.251.1 ID=prot_F-distichus_contig10287.251.1|Name=mRNA_F-distichus_contig10287.251.1|organism=Fucus distichus monoicous|type=polypeptide|length=752bp QVGATKPDRQTRRPEWNQNFQVRSDLFDSNTDKDSKDSESEDNDDHDNDDback to top mRNA from alignment at F-distichus_contig10287:50..10192- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10287.251.1 ID=mRNA_F-distichus_contig10287.251.1|Name=mRNA_F-distichus_contig10287.251.1|organism=Fucus distichus monoicous|type=mRNA|length=10143bp|location=Sequence derived from alignment at F-distichus_contig10287:50..10192- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10287:50..10192- >mRNA_F-distichus_contig10287.251.1 ID=mRNA_F-distichus_contig10287.251.1|Name=mRNA_F-distichus_contig10287.251.1|organism=Fucus distichus monoicous|type=CDS|length=4512bp|location=Sequence derived from alignment at F-distichus_contig10287:50..10192- (Fucus distichus monoicous)back to top |