mRNA_F-distichus_contig102854.249.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102854.249.1
Unique NamemRNA_F-distichus_contig102854.249.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102854.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102854contigF-distichus_contig102854:1276..1890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.3759031-CDS-F-distichus_contig102854:1275..17431622928945.3759031-CDS-F-distichus_contig102854:1275..1743Fucus distichus monoicousCDSF-distichus_contig102854 1276..1743 +
1690885076.9932432-CDS-F-distichus_contig102854:1275..17431690885076.9932432-CDS-F-distichus_contig102854:1275..1743Fucus distichus monoicousCDSF-distichus_contig102854 1276..1743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.4100726-UTR-F-distichus_contig102854:1743..18901622928945.4100726-UTR-F-distichus_contig102854:1743..1890Fucus distichus monoicousUTRF-distichus_contig102854 1744..1890 +
1690885077.0038316-UTR-F-distichus_contig102854:1743..18901690885077.0038316-UTR-F-distichus_contig102854:1743..1890Fucus distichus monoicousUTRF-distichus_contig102854 1744..1890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102854.249.1prot_F-distichus_contig102854.249.1Fucus distichus monoicouspolypeptideF-distichus_contig102854 1276..1743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102854.249.1

>prot_F-distichus_contig102854.249.1 ID=prot_F-distichus_contig102854.249.1|Name=mRNA_F-distichus_contig102854.249.1|organism=Fucus distichus monoicous|type=polypeptide|length=156bp
KRHRHHQPLIFPLVFTHVTRPGTASRGKSHHRARSGIARLISNDPPLPFP
GGLRRLIEAPRTSRAPALIARPTAADEVEHSPSSHGRLLSGRLENLHLYV
PSFVSSTAPAAAADVIAVVVDMTNTRGVGPVVADIITNDPGRILKLLLLL
RSRRH*
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mRNA from alignment at F-distichus_contig102854:1276..1890+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102854.249.1 ID=mRNA_F-distichus_contig102854.249.1|Name=mRNA_F-distichus_contig102854.249.1|organism=Fucus distichus monoicous|type=mRNA|length=615bp|location=Sequence derived from alignment at F-distichus_contig102854:1276..1890+ (Fucus distichus monoicous)
AAACGGCACCGACACCACCAGCCTCTCATTTTCCCCCTCGTTTTTACCCA
TGTCACCCGGCCCGGGACAGCGAGTCGCGGAAAAAGTCACCATCGCGCTC
GAAGCGGGATCGCAAGGCTCATCAGCAACGATCCCCCCCTTCCTTTTCCT
GGGGGCCTTCGTCGGCTTATCGAGGCTCCGCGCACGTCGCGAGCCCCTGC
CCTTATCGCGCGCCCAACGGCCGCGGATGAGGTGGAGCATTCCCCCTCCT
CCCACGGACGCCTCCTGAGCGGACGCCTCGAAAACCTTCACCTTTACGTC
CCTAGTTTTGTTTCTTCCACGGCTCCGGCCGCGGCCGCTGACGTCATTGC
CGTCGTTGTCGACATGACTAACACCCGAGGGGTCGGTCCTGTCGTCGCCG
ATATCATCACCAATGACCCCGGAAGAATCTTGAAGCTGCTGCTGCTGCTG
AGGAGCCGCCGACACTAGGCCAAGAAGGAAAGCCTTCGCTTCGCTCAGCT
TCGAGACGGGTCTCGCCTTGTTCCCTCCTTCGGCCTCAGCACCCACCGCG
GCCCAGGGGGCAGCCGCGGCAGCCGCCTTCTCGTGCAGCATCAGTGGCGG
TGGTTTCTCTACGGT
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Coding sequence (CDS) from alignment at F-distichus_contig102854:1276..1890+

>mRNA_F-distichus_contig102854.249.1 ID=mRNA_F-distichus_contig102854.249.1|Name=mRNA_F-distichus_contig102854.249.1|organism=Fucus distichus monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at F-distichus_contig102854:1276..1890+ (Fucus distichus monoicous)
AAACGGCACCGACACCACCAGCCTCTCATTTTCCCCCTCGTTTTTACCCA
TGTCACCCGGCCCGGGACAGCGAGTCGCGGAAAAAGTCACCATCGCGCTC
GAAGCGGGATCGCAAGGCTCATCAGCAACGATCCCCCCCTTCCTTTTCCT
GGGGGCCTTCGTCGGCTTATCGAGGCTCCGCGCACGTCGCGAGCCCCTGC
CCTTATCGCGCGCCCAACGGCCGCGGATGAGGTGGAGCATTCCCCCTCCT
CCCACGGACGCCTCCTGAGCGGACGCCTCGAAAACCTTCACCTTTACGTC
CCTAGTTTTGTTTCTTCCACGGCTCCGGCCGCGGCCGCTGACGTCATTGC
CGTCGTTGTCGACATGACTAACACCCGAGGGGTCGGTCCTGTCGTCGCCG
ATATCATCACCAATGACCCCGGAAGAATCTTGAAGCTGCTGCTGCTGCTG
AGGAGCCGCCGACACTAGAAACGGCACCGACACCACCAGCCTCTCATTTT
CCCCCTCGTTTTTACCCATGTCACCCGGCCCGGGACAGCGAGTCGCGGAA
AAAGTCACCATCGCGCTCGAAGCGGGATCGCAAGGCTCATCAGCAACGAT
CCCCCCCTTCCTTTTCCTGGGGGCCTTCGTCGGCTTATCGAGGCTCCGCG
CACGTCGCGAGCCCCTGCCCTTATCGCGCGCCCAACGGCCGCGGATGAGG
TGGAGCATTCCCCCTCCTCCCACGGACGCCTCCTGAGCGGACGCCTCGAA
AACCTTCACCTTTACGTCCCTAGTTTTGTTTCTTCCACGGCTCCGGCCGC
GGCCGCTGACGTCATTGCCGTCGTTGTCGACATGACTAACACCCGAGGGG
TCGGTCCTGTCGTCGCCGATATCATCACCAATGACCCCGGAAGAATCTTG
AAGCTGCTGCTGCTGCTGAGGAGCCGCCGACACTAG
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