mRNA_F-distichus_contig10283.247.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10283.247.1
Unique NamemRNA_F-distichus_contig10283.247.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10283.247.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.840e-14
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 LYSGTAVRHDPGRVRGLVEIRRPWTVGELMTFLQATSWMRLSLAHMAVIEAPLRALMK-HLLKGTSRAKRKASRRALTDGDWT 246
            +YSG  V HDP R++GL ++RRP T GELM  LQA +W+R SL  +A +  PLR L++ H+     R KR AS RA+    WT
Sbjct:  787 VYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRAIKSEAWT 869
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10283.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9E0_9PHAE1.840e-1448.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10283contigF-distichus_contig10283:5029..5280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.227234-CDS-F-distichus_contig10283:5028..52801622928945.227234-CDS-F-distichus_contig10283:5028..5280Fucus distichus monoicousCDSF-distichus_contig10283 5029..5280 +
1690885076.948298-CDS-F-distichus_contig10283:5028..52801690885076.948298-CDS-F-distichus_contig10283:5028..5280Fucus distichus monoicousCDSF-distichus_contig10283 5029..5280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10283.247.1prot_F-distichus_contig10283.247.1Fucus distichus monoicouspolypeptideF-distichus_contig10283 5029..5280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10283.247.1

>prot_F-distichus_contig10283.247.1 ID=prot_F-distichus_contig10283.247.1|Name=mRNA_F-distichus_contig10283.247.1|organism=Fucus distichus monoicous|type=polypeptide|length=84bp
LYSGTAVRHDPGRVRGLVEIRRPWTVGELMTFLQATSWMRLSLAHMAVIE
APLRALMKHLLKGTSRAKRKASRRALTDGDWTPE
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mRNA from alignment at F-distichus_contig10283:5029..5280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10283.247.1 ID=mRNA_F-distichus_contig10283.247.1|Name=mRNA_F-distichus_contig10283.247.1|organism=Fucus distichus monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at F-distichus_contig10283:5029..5280+ (Fucus distichus monoicous)
CTTTACTCGGGGACGGCCGTCAGACACGACCCAGGGCGCGTGCGTGGACT
TGTGGAGATACGTCGCCCATGGACAGTGGGTGAGCTGATGACTTTTCTTC
AGGCGACGAGCTGGATGCGTTTGTCACTGGCTCACATGGCGGTAATTGAG
GCACCGCTGCGAGCGTTGATGAAACATCTACTGAAGGGAACGAGCCGAGC
CAAAAGAAAGGCGTCGCGGCGGGCTCTAACGGATGGTGATTGGACGCCGG
AG
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Coding sequence (CDS) from alignment at F-distichus_contig10283:5029..5280+

>mRNA_F-distichus_contig10283.247.1 ID=mRNA_F-distichus_contig10283.247.1|Name=mRNA_F-distichus_contig10283.247.1|organism=Fucus distichus monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at F-distichus_contig10283:5029..5280+ (Fucus distichus monoicous)
CTTTACTCGGGGACGGCCGTCAGACACGACCCAGGGCGCGTGCGTGGACT
TGTGGAGATACGTCGCCCATGGACAGTGGGTGAGCTGATGACTTTTCTTC
AGGCGACGAGCTGGATGCGTTTGTCACTGGCTCACATGGCGGTAATTGAG
GCACCGCTGCGAGCGTTGATGAAACATCTACTGAAGGGAACGAGCCGAGC
CAAAAGAAAGGCGTCGCGGCGGGCTCTAACGGATGGTGATTGGACGCCGG
AGCTTTACTCGGGGACGGCCGTCAGACACGACCCAGGGCGCGTGCGTGGA
CTTGTGGAGATACGTCGCCCATGGACAGTGGGTGAGCTGATGACTTTTCT
TCAGGCGACGAGCTGGATGCGTTTGTCACTGGCTCACATGGCGGTAATTG
AGGCACCGCTGCGAGCGTTGATGAAACATCTACTGAAGGGAACGAGCCGA
GCCAAAAGAAAGGCGTCGCGGCGGGCTCTAACGGATGGTGATTGGACGCC
GGAG
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