mRNA_F-distichus_contig102807.246.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102807.246.1
Unique NamemRNA_F-distichus_contig102807.246.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102807.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102807contigF-distichus_contig102807:377..778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.1466103-UTR-F-distichus_contig102807:376..3971622928945.1466103-UTR-F-distichus_contig102807:376..397Fucus distichus monoicousUTRF-distichus_contig102807 377..397 +
1690885076.925927-UTR-F-distichus_contig102807:376..3971690885076.925927-UTR-F-distichus_contig102807:376..397Fucus distichus monoicousUTRF-distichus_contig102807 377..397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.1587026-CDS-F-distichus_contig102807:397..7781622928945.1587026-CDS-F-distichus_contig102807:397..778Fucus distichus monoicousCDSF-distichus_contig102807 398..778 +
1690885076.9357402-CDS-F-distichus_contig102807:397..7781690885076.9357402-CDS-F-distichus_contig102807:397..778Fucus distichus monoicousCDSF-distichus_contig102807 398..778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102807.246.1prot_F-distichus_contig102807.246.1Fucus distichus monoicouspolypeptideF-distichus_contig102807 398..778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102807.246.1

>prot_F-distichus_contig102807.246.1 ID=prot_F-distichus_contig102807.246.1|Name=mRNA_F-distichus_contig102807.246.1|organism=Fucus distichus monoicous|type=polypeptide|length=127bp
MTSMNSRSKLEERYGRRNVEKSLVVWNALTKAIETDKTIADIVLGAKAPS
EAWKILNSMVEDDCSDRTKEQANKNFEVLSMNDAESMKEYIARAKSLALN
IKYHDIEVTDQEISRKVLNGLPPSYAP
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mRNA from alignment at F-distichus_contig102807:377..778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102807.246.1 ID=mRNA_F-distichus_contig102807.246.1|Name=mRNA_F-distichus_contig102807.246.1|organism=Fucus distichus monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at F-distichus_contig102807:377..778+ (Fucus distichus monoicous)
AGGTACAGCCGACCGATAATCATGACCTCAATGAATTCCCGATCAAAACT
TGAAGAACGGTACGGTAGGCGGAACGTGGAGAAGTCACTGGTCGTCTGGA
ACGCTTTAACGAAAGCAATAGAAACAGACAAGACGATTGCAGATATCGTA
TTAGGAGCCAAAGCTCCGTCGGAGGCATGGAAGATATTGAACAGTATGGT
CGAGGATGACTGTAGTGATAGGACCAAAGAGCAGGCTAATAAAAACTTTG
AAGTACTGAGTATGAACGATGCTGAATCGATGAAAGAATACATCGCCCGC
GCGAAGTCTCTAGCCCTCAATATAAAGTATCACGACATTGAGGTAACTGA
TCAAGAGATCAGCCGCAAAGTCTTGAATGGTCTCCCCCCCTCATATGCTC
CC
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Coding sequence (CDS) from alignment at F-distichus_contig102807:377..778+

>mRNA_F-distichus_contig102807.246.1 ID=mRNA_F-distichus_contig102807.246.1|Name=mRNA_F-distichus_contig102807.246.1|organism=Fucus distichus monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at F-distichus_contig102807:377..778+ (Fucus distichus monoicous)
ATGACCTCAATGAATTCCCGATCAAAACTTGAAGAACGGTACGGTAGGCG
GAACGTGGAGAAGTCACTGGTCGTCTGGAACGCTTTAACGAAAGCAATAG
AAACAGACAAGACGATTGCAGATATCGTATTAGGAGCCAAAGCTCCGTCG
GAGGCATGGAAGATATTGAACAGTATGGTCGAGGATGACTGTAGTGATAG
GACCAAAGAGCAGGCTAATAAAAACTTTGAAGTACTGAGTATGAACGATG
CTGAATCGATGAAAGAATACATCGCCCGCGCGAAGTCTCTAGCCCTCAAT
ATAAAGTATCACGACATTGAGGTAACTGATCAAGAGATCAGCCGCAAAGT
CTTGAATGGTCTCCCCCCCTCATATGCTCCCATGACCTCAATGAATTCCC
GATCAAAACTTGAAGAACGGTACGGTAGGCGGAACGTGGAGAAGTCACTG
GTCGTCTGGAACGCTTTAACGAAAGCAATAGAAACAGACAAGACGATTGC
AGATATCGTATTAGGAGCCAAAGCTCCGTCGGAGGCATGGAAGATATTGA
ACAGTATGGTCGAGGATGACTGTAGTGATAGGACCAAAGAGCAGGCTAAT
AAAAACTTTGAAGTACTGAGTATGAACGATGCTGAATCGATGAAAGAATA
CATCGCCCGCGCGAAGTCTCTAGCCCTCAATATAAAGTATCACGACATTG
AGGTAACTGATCAAGAGATCAGCCGCAAAGTCTTGAATGGTCTCCCCCCC
TCATATGCTCCC
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