mRNA_F-distichus_contig10275.242.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10275.242.1
Unique NamemRNA_F-distichus_contig10275.242.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: A0A6H5JD73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD73_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 8.140e-95
Identity = 158/233 (67.81%), Postives = 190/233 (81.55%), Query Frame = 1 
Query:    1 RSHMVQIGVMTVVFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAEEEEIPSGICDAGV 699
             + + ++G+MT VF  LL +NLLKGGGAF SP+GIVCGSF+FWATS L   YL  VSL VR+YL++RW LK ++ + Y+EGD+ W+PLNT+RYP IC FAGF AGMFGVGGGIVKGPLMLEMGVHPMV+S+TSAVMIL+TSFTATT+F+VFG+L  DYA+ LFFLGLVATA+GQ GTDYL+ KFKRPS IILSI +VV +SA LMG NG+ DIL   +  +EE   GIC AGV
Sbjct:  275 HTSLAKVGIMTAVFVVLLIVNLLKGGGAFDSPVGIVCGSFSFWATSVLSFAYLVGVSLFVRRYLVKRWVLKAEVGFEYVEGDVEWTPLNTIRYPCICFFAGFVAGMFGVGGGIVKGPLMLEMGVHPMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAMGQYGTDYLINKFKRPSFIILSIASVVALSAFLMGINGLYDILHPTAGGDEE--DGICSAGV 505
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: A0A836CFF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFF2_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.000e-76
Identity = 132/215 (61.40%), Postives = 165/215 (76.74%), Query Frame = 1 
Query:   52 LALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAEEEEIPSGICDAG 696
            LA+N+LKGGGAF SPLGI CGSF FW  S   LV++   SL VR  L+ +WRLK K  Y Y+EGD++WSP  T++YP++C FAGF AG+FGVGGGIVKGPLMLEMGVHP VASATSA MIL+TSFTATT+FMVFG+L+ DYA ++F +GL+AT VGQ G +YL+++++R SLII+SIGAVV +SALLMG   +  +   R  +E     G C AG
Sbjct:   11 LAVNILKGGGAFPSPLGIRCGSFMFWGASVFILVWVTGTSLWVRDMLVAQWRLKTKCGYRYVEGDVQWSPSATIKYPSLCFFAGFCAGLFGVGGGIVKGPLMLEMGVHPKVASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQDDES---GGFCAAG 222
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: A0A835ZGS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA)

HSP 1 Score: 267 bits (682), Expect = 4.610e-75
Identity = 134/227 (59.03%), Postives = 173/227 (76.21%), Query Frame = 1 
Query:   16 QIGVMTVVFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAEEEEIPSGICDAG 696
            ++ +++ VF  +LA+N+LKGGGAF SPLGI CGSF FW  S   LV++   SL VR  L+ +WRLK K  Y Y+EGD++WSP  T++YP++C FAGF AG+FGVGGGIVKGPLMLEMGVHP VASATSA MIL+TSFTATT+FMVFG+L+ DYA ++F +GL+AT VGQ G +YL+++++R SLII+SIGAVV +SALLMG   +  +   R  +E     G C AG
Sbjct:  299 KVAILSGVFVVVLAVNILKGGGAFPSPLGIRCGSFMFWGASVFILVWVTGTSLWVRDMLVAQWRLKTKCGYRYVEGDVQWSPSATIKYPSLCFFAGFCAGLFGVGGGIVKGPLMLEMGVHPKVASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQDDES---GGFCAAG 522
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: K0SYB4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SYB4_THAOC)

HSP 1 Score: 243 bits (621), Expect = 9.680e-69
Identity = 128/229 (55.90%), Postives = 158/229 (69.00%), Query Frame = 1 
Query:    1 RSHMVQIGVMTVVFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAEEEEIPSGIC 687
            R  M  +  + V FA +L +NLLKGGGAF+SPLGI CGS +FW  + L L ++  VS   R YL+ R   KE++ YPY+EGDIRW    TV YPA+C  AGFFAGMFGVGGGIVKGPLML MGVHP V+SA+SA MIL+TSFTATT+F+VFG+L  +YA V   LG  AT VGQ G  YL+++F+R S I  SIGA+V +SA LM    +  + DS        PSG+C
Sbjct:  115 RVPMGNVHALAVTFAVVLVVNLLKGGGAFKSPLGIRCGSPSFWTANGLILGWILVVSFFARSYLVHRCEDKERVGYPYVEGDIRWDSRATVVYPAVCTAAGFFAGMFGVGGGIVKGPLMLAMGVHPKVSSASSACMILFTSFTATTSFVVFGLLDMEYAPVCLLLGFAATLVGQIGLIYLMERFQRNSYIAFSIGAIVALSAFLMTVQSLLSMADSGGPRP---PSGLC 340
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: A0A7R9YCQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 1.590e-67
Identity = 122/194 (62.89%), Postives = 148/194 (76.29%), Query Frame = 1 
Query:   37 VFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMG 618
            VF  +L +NL KGGG +  P G+VCGSF FW  +A  L  L  VS  VR+YL+ R  +K K+ Y Y+EGD+ W    T+ YP +C  AGF AGMFGVGGGIVKGPLMLEMGVHP VASATSA MILYTSFTAT++F+ FG++K DYAI LFF+GLVATA GQ G +YL+KK+KR SLIILSIG+VV +S ++MG
Sbjct:   53 VFLLILVINLAKGGGGWN-PFGVVCGSFEFWFLTAAMLGILLFVSYEVRKYLVERTEVKAKVLYHYVEGDVVWDARATIVYPVVCALAGFAAGMFGVGGGIVKGPLMLEMGVHPAVASATSACMILYTSFTATSSFIAFGMVKYDYAIFLFFVGLVATAAGQLGVNYLIKKYKRQSLIILSIGSVVSLSTVMMG 245
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: A0A482SUY7_9ARCH (Probable membrane transporter protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUY7_9ARCH)

HSP 1 Score: 240 bits (612), Expect = 2.610e-67
Identity = 116/211 (54.98%), Postives = 158/211 (74.88%), Query Frame = 1 
Query:   28 MTVVFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAE 660
            ++V+   ++ LNL+KGGGAF SPLGI CGS  +W  +AL  V++  VS+ +R  L+++W+LK+K+ Y Y+EGD+ W+P+NT+ YP IC FAGFFAG+FG+GGGIVKGPLML+MGVHP+VASAT AVMI++TS  ATT F+ FG L  DYA   F LGL AT VGQ G  YL+ +++R SL+ LSIGAVV +S +LM    V  ++++ S +
Sbjct:  136 VSVLVLVVVILNLIKGGGAFPSPLGIECGSSGYWFLTALVFVWVLGVSMYMRNVLIKKWQLKKKLRYRYVEGDVEWNPINTLVYPCICFFAGFFAGLFGIGGGIVKGPLMLQMGVHPLVASATCAVMIMFTSVAATTMFVAFGTLTWDYAWFFFILGLAATVVGQFGVSYLVVRYRRVSLVSLSIGAVVALSTVLMALQAVFSLVEASSQD 346
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: B7FS95_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS95_PHATC)

HSP 1 Score: 246 bits (629), Expect = 1.550e-66
Identity = 125/231 (54.11%), Postives = 162/231 (70.13%), Query Frame = 1 
Query:    4 SHMVQIGVMTVVFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAEEEEIPSGICDAG 696
            + M  I ++  +F  +L +N+LKGGGAF SPLGI CGS AFW  + + L ++  +S+G+R YL+RR+  K ++ +PY+EGDIRW    T+ YP +CC AGFFAGMFGVGGGIVKGPLML MGVHP V+SA+SA MIL+TSFTATT+F+VFG+L  DYA V   +G VAT  GQ G  YL+++ +R S I  SIGAVV++SA LM        L S +A E+    GIC  G
Sbjct:  417 TPMANISILVTMFIVVLTINVLKGGGAFPSPLGIRCGSRAFWIANLVMLAWIGIISVGIRAYLVRRFEQKRRLSFPYVEGDIRWDARATIVYPVVCCMAGFFAGMFGVGGGIVKGPLMLAMGVHPAVSSASSACMILFTSFTATTSFVVFGLLVWDYAYVCMAIGFVATFAGQVGLSYLMRRAQRNSYIAFSIGAVVLLSAFLMTIQS----LLSMAAGEKHHSGGICGKG 643
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: A0A7S2KFB8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KFB8_9STRA)

HSP 1 Score: 241 bits (615), Expect = 7.470e-66
Identity = 123/224 (54.91%), Postives = 160/224 (71.43%), Query Frame = 1 
Query:   16 QIGVMTVVFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAEEEEIPSGIC 687
             + V+ V F  +L +NL+KGGGAF SPLGI CGS +FW ++ + L ++  VS+  R YL+RR  +KE++ YPY+EGDI+W    TV YP IC  AGFFAGMFGVGGGIVKGPLML MGVHP V+SA+SA MIL+TSFTATT+F+VFG+L  DYA++   LG VAT VGQ G  YL++KF+R S I  SIG +V++SA+LM    +  + D     E    +G+C
Sbjct:  294 NVKVLVVTFVVILFINLMKGGGAFPSPLGIRCGSPSFWVSNGVMLGWILLVSVFARMYLVRRHEIKERVGYPYVEGDIKWDSRATVVYPLICTAAGFFAGMFGVGGGIVKGPLMLAMGVHPKVSSASSACMILFTSFTATTSFVVFGLLDMDYAVICMSLGFVATLVGQIGLFYLMEKFQRNSYIAFSIGGIVLLSAILMTIQSLISMADRGGPSEA---AGLC 514
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: A0A812VCU1_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VCU1_SYMMI)

HSP 1 Score: 235 bits (600), Expect = 1.260e-65
Identity = 116/223 (52.02%), Postives = 159/223 (71.30%), Query Frame = 1 
Query:    1 RSHMVQIGVMTVVFACLLALNLLKGGGA-FRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAEEE 666
            ++ M ++ ++ V+FA L+ LNL+KGGGA F SP+GI CG F +WA +     ++ A++L +R  L+++W+ K+++ Y Y  GD+ W+  NT+ YP +C FAGF AGMFG+GGG+VKGPLMLEMGVHPMVA+AT AVMI  T+  ATT+F+ FG L  DYA  LF  GL ATA+GQ G  YL+KK+KR SLI LSIGAVV +S +LMG   V  +L     +++
Sbjct:  135 KTPMDKVQILIVMFAVLITLNLIKGGGAAFPSPVGIECGGFMYWAVTLAIFAWVFAIALYMRSELIKKWKTKKRLRYKYAPGDVEWNERNTIIYPLLCIFAGFCAGMFGIGGGVVKGPLMLEMGVHPMVAAATVAVMIFMTAIAATTSFIAFGTLTFDYAYYLFVFGLGATAIGQFGVAYLVKKYKRTSLISLSIGAVVALSTVLMGLQSVLSLLSPDGEQDD 357
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BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Match: B8BSV0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSV0_THAPS)

HSP 1 Score: 241 bits (616), Expect = 1.610e-65
Identity = 122/224 (54.46%), Postives = 160/224 (71.43%), Query Frame = 1 
Query:   16 QIGVMTVVFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYLAAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFFAGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGVLKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISALLMGYNGVKDILDSRSAEEEEIPSGIC 687
             + V+ V F  +L +N++KGGGAF SPLGI CGS +FW ++ + + ++  VS+  R YL+RR+ +KE++ +PY+EGDIRW    TV YP +C  AGFFAGMFGVGGGIVKGPLML MGVHP V+SA+SA MIL+TSFTATT+F+VFG+L  DYA V   LG VAT VGQ G  YL++KF+R S I  SIG +V++SA LM    +  + DS   +    P G+C
Sbjct:  340 NVQVLLVTFTVILFINIMKGGGAFPSPLGIRCGSPSFWVSNGIMIGWILLVSVFARSYLVRRYEIKERVGFPYVEGDIRWDGRATVVYPLVCTAAGFFAGMFGVGGGIVKGPLMLAMGVHPKVSSASSACMILFTSFTATTSFVVFGLLDMDYATVCMTLGFVATLVGQIGLFYLMEKFQRNSYIAFSIGGIVLLSAFLMTIQSLLSMADSGGPK---APQGLC 560
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10275.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD73_9PHAE8.140e-9567.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFF2_9STRA1.000e-7661.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGS5_9STRA4.610e-7559.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0SYB4_THAOC9.680e-6955.90Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7R9YCQ0_9STRA1.590e-6762.89Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A482SUY7_9ARCH2.610e-6754.98Probable membrane transporter protein n=1 Tax=arch... [more]
B7FS95_PHATC1.550e-6654.11Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2KFB8_9STRA7.470e-6654.91Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A812VCU1_SYMMI1.260e-6552.02Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
B8BSV0_THAPS1.610e-6554.46Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10275contigF-distichus_contig10275:99..6334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.3
Seed ortholog evalue2.3e-61
Seed eggNOG ortholog2850.Phatr32656
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs28PZK@1,2QWNB@2759,2XE4Z@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size3165
Cds size693
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.6467412-UTR-F-distichus_contig10275:98..1071622928944.6467412-UTR-F-distichus_contig10275:98..107Fucus distichus monoicousUTRF-distichus_contig10275 99..107 +
1690885076.7090123-UTR-F-distichus_contig10275:98..1071690885076.7090123-UTR-F-distichus_contig10275:98..107Fucus distichus monoicousUTRF-distichus_contig10275 99..107 +
1622928944.7862995-UTR-F-distichus_contig10275:3871..63341622928944.7862995-UTR-F-distichus_contig10275:3871..6334Fucus distichus monoicousUTRF-distichus_contig10275 3872..6334 +
1690885076.7696202-UTR-F-distichus_contig10275:3871..63341690885076.7696202-UTR-F-distichus_contig10275:3871..6334Fucus distichus monoicousUTRF-distichus_contig10275 3872..6334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.6663175-CDS-F-distichus_contig10275:107..2711622928944.6663175-CDS-F-distichus_contig10275:107..271Fucus distichus monoicousCDSF-distichus_contig10275 108..271 +
1690885076.7231328-CDS-F-distichus_contig10275:107..2711690885076.7231328-CDS-F-distichus_contig10275:107..271Fucus distichus monoicousCDSF-distichus_contig10275 108..271 +
1622928944.6834557-CDS-F-distichus_contig10275:498..6921622928944.6834557-CDS-F-distichus_contig10275:498..692Fucus distichus monoicousCDSF-distichus_contig10275 499..692 +
1690885076.7352335-CDS-F-distichus_contig10275:498..6921690885076.7352335-CDS-F-distichus_contig10275:498..692Fucus distichus monoicousCDSF-distichus_contig10275 499..692 +
1622928944.6965199-CDS-F-distichus_contig10275:980..10781622928944.6965199-CDS-F-distichus_contig10275:980..1078Fucus distichus monoicousCDSF-distichus_contig10275 981..1078 +
1690885076.7434733-CDS-F-distichus_contig10275:980..10781690885076.7434733-CDS-F-distichus_contig10275:980..1078Fucus distichus monoicousCDSF-distichus_contig10275 981..1078 +
1622928944.7566013-CDS-F-distichus_contig10275:3239..33231622928944.7566013-CDS-F-distichus_contig10275:3239..3323Fucus distichus monoicousCDSF-distichus_contig10275 3240..3323 +
1690885076.7541707-CDS-F-distichus_contig10275:3239..33231690885076.7541707-CDS-F-distichus_contig10275:3239..3323Fucus distichus monoicousCDSF-distichus_contig10275 3240..3323 +
1622928944.7688406-CDS-F-distichus_contig10275:3718..38711622928944.7688406-CDS-F-distichus_contig10275:3718..3871Fucus distichus monoicousCDSF-distichus_contig10275 3719..3871 +
1690885076.761966-CDS-F-distichus_contig10275:3718..38711690885076.761966-CDS-F-distichus_contig10275:3718..3871Fucus distichus monoicousCDSF-distichus_contig10275 3719..3871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10275.242.1prot_F-distichus_contig10275.242.1Fucus distichus monoicouspolypeptideF-distichus_contig10275 108..3871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10275.242.1

>prot_F-distichus_contig10275.242.1 ID=prot_F-distichus_contig10275.242.1|Name=mRNA_F-distichus_contig10275.242.1|organism=Fucus distichus monoicous|type=polypeptide|length=231bp
MVQIGVMTVVFACLLALNLLKGGGAFRSPLGIVCGSFAFWATSALCLVYL
AAVSLGVRQYLLRRWRLKEKIDYPYIEGDIRWSPLNTVRYPAICCFAGFF
AGMFGVGGGIVKGPLMLEMGVHPMVASATSAVMILYTSFTATTTFMVFGV
LKADYAIVLFFLGLVATAVGQAGTDYLLKKFKRPSLIILSIGAVVVISAL
LMGYNGVKDILDSRSAEEEEIPSGICDAGV*
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mRNA from alignment at F-distichus_contig10275:99..6334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10275.242.1 ID=mRNA_F-distichus_contig10275.242.1|Name=mRNA_F-distichus_contig10275.242.1|organism=Fucus distichus monoicous|type=mRNA|length=6236bp|location=Sequence derived from alignment at F-distichus_contig10275:99..6334+ (Fucus distichus monoicous)
CGCTCGCATATGGTACAGATCGGCGTTATGACTGTCGTTTTCGCCTGTCT
ACTGGCCCTCAACCTTCTCAAAGGAGGCGGGGCCTTCCGCAGCCCCCTGG
GCATCGTGTGCGGGTCCTTCGCGTTCTGGGCAACCTCGGCCCTATGCTTG
GTCTACCTGGCTGCCGTCTCTTTGTGAGTTTGGCTTTCGGTGCGGGTGTA
ACGATGCCATGTCCACCACTTCATATTTTTCACCACTGCACCTACTGTAC
TGTATTACCTGTACCGAAGAGGCGAAGGCTTGAATCCTTGAAATGAAAGC
GACCCGTCGAGGAAATAGCTTGTCGTCACCACCGTGAAATACTCTCTCTC
CGCCTCTTGCCCGCCACCCTCGCTCCTTCGTTATTCTCTCGCATGAGTAG
GGGAGTGCGACAGTATCTACTCCGGCGATGGCGTTTGAAGGAGAAAATTG
ATTATCCATACATCGAGGGCGACATACGGTGGTCCCCCTTGAACACGGTA
CGATACCCGGCCATCTGCTGCTTTGCGGGATTCTTCGCGGGGATGTTCGG
CGTGGGCGGCGGCATTGTGAAAGGGCCGCTTATGTTGGAGATGGGTAAGG
GAGAAGGAGCGAGGGAGGCAAGACCAACCCTGCCGGCCTGCGTTACATCC
GTTTTGCACCCATTAGCCGATGCACAAGATTATGTCATTAGATCCACCTG
GTATGGGCCGTTGAATTATGCACACACAGACAACGACCCTCGAAGCCCTT
CAGTTCGTTGTTCCCACTGAAGCGGTCGTGACCCTACGGTCGCTCTCCTC
TCTTTTCCTCTCAAGCCCAGTTTCACCACAACGCCTCGACACATTGCCAT
ACCACGTCCCGCGCCGCTTCTCACTCACGCAGGCGTTCATCCGATGGTGG
CTTCGGCAACATCGGCTGTAATGATACTTTATACGTCCTTCACTGCGACC
ACGACATTCATGGTCTTTGGGGTGCTCAAGGTACGCGCACGTTGGCAACA
AACATAACACCGTGGTATATCTTCGAACCCGCCGTTTCTTGTTTCACTTT
TGACATCACCGGGGCATCAAAGCAGAGCTACTCAATCTGAACCCTTTTTA
CGAAAAGCTTCTTCCACACCTACTACAAGAAGCTAACTATAATAGTACTC
CTACTCTGTATGGTGGTCACATAAGGCAAGAGAAGAATCAATCGGGTAAG
GTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAAGGAAAATTTCCC
TATCCCCGTTCGCGCCTGAGAATTTAGTCTTGCGAGACGGTTTCGAACGG
GTGCTACCTTGGCAGGTCACCATGGACCAATTAATATGCGCCTCTCTTTC
CCGCACCCACTACTGGTATGAAGTGGGCATGTTTAAAGTACTGGCGTACT
GTAGGCTACTCAAGCACTAAATAGTCGTCCCCGGACCCTTGGGAGGAAAG
TACTGAAAACCCTCTCAACCAAATGCAGATACTTCTACTGTATGGTGATC
GCACAGGGCAAGAGAAGGATCAATCGGGTAAGGTTGCCAATGCTACTCGT
GGTCAGCTGAACAGGGAAAATAAATACTTCCCTATCCCCGTTCGCGCCTG
AGAATTTAGTATCGCGAGACGGGTTCGGCAGTTCCGTCCCGCGTCAGCCT
GCTCATCTCCATACTCAGGCTGAATCTGGTGCTCACTTACGGGATTCCTC
CCGATATCCGCGGCGGCGACCATTTATTTATATAAACTGTCATACGCCAT
CGGATCAGTCCCGAGTTTATTGGCTCGCGCAAATGCGTACCGGTGGCGTT
TAGTGTCGGAACTCTGCCGACTCAAGGTAGTTCCGAACGGTTGCTGCCTT
GGCAGGTCACCGTGGACCGACTAATATTCGCCTCTCTTTCCCGCACCCAC
TAGTGGTATGAAGTGGGCATGTTGATAGTACTGGCGAAACTGTAGGCTAT
TCTCGTGCCCTCTCTCTCCGAAACCTGGTTTCGTGGTATGAGCATGGGAG
GATCTTTCCGGCGTGTGTAGGGCCGGGCTCACCCTCTAGAGATGCAGCCA
ACTGCTGCCTTTGCCATTCCACGTGTCGGTTGAGACGCGGCGGCGGTATG
GTTGTCTGAGGATTGTGTTCCCGGGTTTTCGCCCCTTCCGAGCTCCAATT
TGGTGCCCGTCGGGAGGGTGGCGGCACGCGAGAGGCAGGGAGAACTGTCG
CGGAGAGCCTGGTAGTCCTCTATCGGGTGGGTACGTACCACATTCGGCAA
AGGCGGAGGGTAGTCGATCGTCGACGAGCCTGGGGAAGGCTGAACCCATG
TGCGCGAGAGAATCGAGGGCGTGAACCGGGAGGTTTCTGAGGGAAAAGTT
GATGTCTGACCACGGTCATTTTTCTTCCTACGAGGGCCACAAGGAGCGGC
GAACGGGCAAGATCCGTGGGGGGTTTCGAGGATGCGCAGGGCTTTGGACG
GCTGGATGCTGGCTCGCGCACAGGCTTACCAGCTCAAGGCCTCCACCACC
ATGGACCTCGGTATTTCAATTTTCCATATTCTTGTACGATATGGGGCCTT
GAGAAACTTGGACTTGTTAATCAAAACTGATTGGAGCGTAATTTGTCCGC
TTTGTTGTTGAGGACGCTGGTCGTGGGTAGGCGACAACAATTCGAGTCGA
TCGAGGCTGCTTTCGATACGGAGTAAGATTTGAGGAACCGTTTTGATGTT
GGTCGGTGCCATTGTGCAGGGTCGCATAATTTTTTGTCGCGATTTGGACC
CCTGTTTGTCTGAGTAGCGGGTTGTCACCACGATGTGACTCGTTGACATT
GGTACCTTGTGACCACAAGCGGGATTGGCATTTGAGGTCTATGGCTATTT
GTTATGTCACTGTAATTTCTCCAGTTGCAAGGACAATACGCTGAATGTGT
GAATCAAGAACAACAGCAACAACTCAAGCCCTAAATATTCGTCCCCGGAC
CCTTGGGGAAGTACTGAAGATCTATCATTCAAATGCAGAGACGTTCGCAA
TGTTTGCTACAAAAGCAATTAAGCTACAGCTCCTCTTTGTAGAATTCTGT
AGGACCGGGTGCTCATCCAGGTTCAAAATTGACGAAATTATGTTTTCCCG
CGGTCTTCGCCCAAACGGCACTGCCTCGTACTAATTGGAAGGCGGACTAC
GCCATCGTGCTGTTTTTCCTGGGTCTGGTGGCCACGGCTGTGGGGCAGGC
CGGCACAGATTACCTTCTCAAGAAGGTATGTCCCGAGTGTGTAGGAAGTA
TACTTGCGCTGAGTTGAATTTCAATACAGCGCGATACAAAACAAGGGCAC
CTCAGCCGGTGATATGGCGGGAGCTACAGTAGGGACCGTTTTGTGGGCTC
TGTAGATGCCATCTGGTCAGGTCAGACTACTACCACCAGAAAGTGTCTCG
CGGGTTCGTTGAGTGACTCGATGTGATTATTTTTTACAAATCACGCTGCT
GCGCCGCACATGTGAAAATATTAGGATTTTATCTCATATCTCATAGTATA
CAACAGTATCCACAAGCGTTCCACCCCCCACCCTTCCGACCGGTTGGCCG
GTTTGCGTTCCTCCTCCGGCTGCCGTTCGGTCGTCCATTGTCCGGCGCTC
GATTGGCACGCACGGTGCAGTTCAAGCGTCCCAGCCTTATCATCCTCTCC
ATCGGTGCAGTTGTGGTGATTAGTGCGTTACTAATGGGATACAACGGAGT
AAAAGATATCCTGGACTCTCGCTCTGCCGAAGAAGAAGAAATACCCTCTG
GCATATGTGATGCCGGCGTGTAGCCGTCAACAGGCGTCTCTTGAGAGATG
GGTAGCCTTCGTGGTTTTGCTCCGCGACGAGAACAGTTTTTTTTTACTCT
TTGCCAATGTTTCCCGGCACTCTTGTAATACATATGTTTGTTTCACTACA
CCAGGGTATGACCATTTACTGTATGCAGAAATGTTTTCTTCTAGTCTTCT
GTATAAGGACGGGTGTTGGGAGGGGCTAAGCGGGTGTTGTGTGGTCATTG
CAGCTTCATTGTTTCCCGTCCGATTTTTATGTGAGTGTGGATGGGGAGTG
GGTGAAGGCATCCACGGTGGTTGGAGTATATGGGAGGCGCCTTTGACGGG
CACCGACGAACCAACATGCGAAAGGCTGGTGCTGCCTCCGGGGGTTTTAG
TGAACACTTAGGCAAGGAAAACATAGTTTGATAGTAGTGGTCTTAAGCGT
CGTACCGGCGTTGCGTATGGCACTCGCAGTAAGAAAGTCTTGTAATATTT
AGGATGGAGTGAAGCGTTGATCGTCCGCTCGGAACAGCGATTGGGTGCAG
TCGGGGTGGAGGGAACTCAACTAGTCACAAACATGAGAGGGCGAAGTTGC
GCCCGCAACTCACTTCCCGGCTCAGCTTTCTTACCTTTATTTTATCATAG
GTTTGTAATTACCCCCTACTAGTACATATTTTTTGGAGCTAGTGAGGAAG
ATAATAGCTCGACGACCATTCTTTTGTCCCTGCCGTTTGATGCACTACAA
TTTGATACAGTATACACGCTTCGTATCTAACTCGGATCCTAGTGGGGGGT
TTTGGCCTTGTGCGGGCAGGTACCGGCGAGGTATTTTTTTTAATTTGCCC
TCCAGCCAGCCCGATTGCACCTGTAGAAAGATTGGCGTAGGTCCTCCATA
GAGGCTCAGCGCATCGTAGAGTTGGACTTTTGGTAAAGCTGTTTCGGAAA
TGAGTGCCTGACACTTTTTTGTTCACGGGCCCCGTTTGTTGTGACTTACA
TCCCGCTTTCTATATACTCATACATGGTTATTATAGTTTGGGGTGCCCGT
TGATGTTGATTGTAATGTACTGTACGATGTAGTATTTGAGTACATAAGTA
GACTCATGCGTTGCGCGAATTTTGGGCGCGTGAATTTGTCGGTTTAAGCT
AACTAATGTTGGAGGGTGCGATAAGCGATAGCGAAGTTTTGCCACCAGCC
GTCGGCGTTGGTCGTGGGTGCTATCGTTCACAGCGGTAAAGGAATTTTAA
CATCAGTAAAGGTTTGTCCGATGCCTGGTTTAACCGTGTAGAGGTTTTCA
CCCCAGGTATAGACTCAGGTATATGGGATGGGGTTGGGCACTGTTGGGGC
TAAATACTGAACGCCTGTGTTTCTGGAGTCGAATTTTATATGAGCTCAAT
GAGCGATTGTTATGTCATTCGTGTATATCTCCAAATAATGGATTTCGATT
TATTCTGGTTGATGGTAGCGAGCGATTCAAATCTCGCGAAAAATGAATAG
TCTTTTTTCGTCTTCCCTGAGTTGTCTGGCTGGCGTTCGTGCATTATTTA
GGTTGAAGCTTCTCGTTTGTGAAACGTAAAAATTACGAAGAGGTTAAAAA
AGTATAACAACAAATATTTCGTAGTGCGGTTGGAACGGGTTTGAAGTGAG
GATTCAACCGGCGGGTTTAAAGACATATGGGTGGAAATTTTCTCTCGCAG
ACGACCGAACATTTGATGTGTCGTTCACCTCTTTGATGTGTCATGTGTGC
ATTTCTCGCTGCTGGCGTTGGATGTTGCCTCTTTTCTCTGATACCAATGT
ATTAGAGATAGTCATGGTATAGACGGAACATCAGCATATTCTGTGCGCGC
CTGAAGACTTCTACATATACAATACAGTACCTTACATGATCGGAGTGCAG
TTAGTGTAGAGAGATGTAAGAGATGTTGATTGTAGGCAGAAGTTCGCGGG
GACAAACCGAAGTATGACCGCGAGACAGGAGCGAGTAGAGCGTAACGCTC
GATGCACTCGTTGGTGGATGGTTTGAGTGAAATGACGGTGATGGATGGGT
GGAAGTATAGTTCGTAGGTGTGGTCTGAATTACTATTAATAGTTATCATG
CCGTACAGTGAACTTGATATTATGTACCTAGTCTTCAAGTTGTTTTCAAG
TTGTTTAAGCCTACTCCCCCCCCCCGTCACTGCAAGAGTCGTCTCGGTTT
TCATGTAAGGCTTTGTGTTAAAAGTATAGTACTGTACCAGTATTTAATAA
TGTACCGGTATGTAATCATGGCGGTTATAGTTCTCGGGGTTGGATGCGAG
AGAAAATAAGGGGAGTTGCTATATAGGGCTGGGTCACATTTCGCTGGTGC
AGCCAGTATTGCCGCTGGTTCGGCTGAGGTACACGTATAAAATGGAAAAA
TAAATGCGGAGAAAATAGATTTTCCCGGTCCCTACTTGGTTCGACCGTTC
GACCGTCCCTTCTCGCGCCAGCACAGTCATTCAACA
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Coding sequence (CDS) from alignment at F-distichus_contig10275:99..6334+

>mRNA_F-distichus_contig10275.242.1 ID=mRNA_F-distichus_contig10275.242.1|Name=mRNA_F-distichus_contig10275.242.1|organism=Fucus distichus monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at F-distichus_contig10275:99..6334+ (Fucus distichus monoicous)
ATGGTACAGATCGGCGTTATGACTGTCGTTTTCGCCTGTCTACTGGCCCT
CAACCTTCTCAAAGGAGGCGGGGCCTTCCGCAGCCCCCTGGGCATCGTGT
GCGGGTCCTTCGCGTTCTGGGCAACCTCGGCCCTATGCTTGGTCTACCTG
GCTGCCGTCTCTTTATGGTACAGATCGGCGTTATGACTGTCGTTTTCGCC
TGTCTACTGGCCCTCAACCTTCTCAAAGGAGGCGGGGCCTTCCGCAGCCC
CCTGGGCATCGTGTGCGGGTCCTTCGCGTTCTGGGCAACCTCGGCCCTAT
GCTTGGTCTACCTGGCTGCCGTCTCTTTGGGAGTGCGACAGTATCTACTC
CGGCGATGGCGTTTGAAGGAGAAAATTGATTATCCATACATCGAGGGCGA
CATACGGTGGTCCCCCTTGAACACGGTACGATACCCGGCCATCTGCTGCT
TTGCGGGATTCTTCGCGGGGATGTTCGGCGTGGGCGGCGGCATTGTGAAA
GGGCCGCTTATGTTGGAGATGGGGGAGTGCGACAGTATCTACTCCGGCGA
TGGCGTTTGAAGGAGAAAATTGATTATCCATACATCGAGGGCGACATACG
GTGGTCCCCCTTGAACACGGTACGATACCCGGCCATCTGCTGCTTTGCGG
GATTCTTCGCGGGGATGTTCGGCGTGGGCGGCGGCATTGTGAAAGGGCCG
CTTATGTTGGAGATGGGCGTTCATCCGATGGTGGCTTCGGCAACATCGGC
TGTAATGATACTTTATACGTCCTTCACTGCGACCACGACATTCATGGTCT
TTGGGGTGCTCAAGGCGTTCATCCGATGGTGGCTTCGGCAACATCGGCTG
TAATGATACTTTATACGTCCTTCACTGCGACCACGACATTCATGGTCTTT
GGGGTGCTCAAGGCGGACTACGCCATCGTGCTGTTTTTCCTGGGTCTGGT
GGCCACGGCTGTGGGGCAGGCCGGCACAGATTACCTTCTCAAGAAGGCGG
ACTACGCCATCGTGCTGTTTTTCCTGGGTCTGGTGGCCACGGCTGTGGGG
CAGGCCGGCACAGATTACCTTCTCAAGAAGTTCAAGCGTCCCAGCCTTAT
CATCCTCTCCATCGGTGCAGTTGTGGTGATTAGTGCGTTACTAATGGGAT
ACAACGGAGTAAAAGATATCCTGGACTCTCGCTCTGCCGAAGAAGAAGAA
ATACCCTCTGGCATATGTGATGCCGGCGTGTAGTTCAAGCGTCCCAGCCT
TATCATCCTCTCCATCGGTGCAGTTGTGGTGATTAGTGCGTTACTAATGG
GATACAACGGAGTAAAAGATATCCTGGACTCTCGCTCTGCCGAAGAAGAA
GAAATACCCTCTGGCATATGTGATGCCGGCGTGTAG
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