mRNA_F-distichus_contig10270.237.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10270.237.1
Unique NamemRNA_F-distichus_contig10270.237.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: D7FPH2_ECTSI (UMP-CMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH2_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 8.820e-56
Identity = 96/142 (67.61%), Postives = 114/142 (80.28%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVAEVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            YVHLSAGELLRQER SGSSDGQLID++I EGRIVPVAI++ LL+KAM+ S P +RFL+DGFPRN DN +              GW+ AM DVA++R VLF  CPEDVLE+RLLSRG+SSGRTDDNA++AK+RF+TYVE TLP
Sbjct:  199 YVHLSAGELLRQERASGSSDGQLIDDYIAEGRIVPVAISLALLRKAMETSEPHSRFLIDGFPRNRDNME--------------GWDEAMGDVADIRSVLFLYCPEDVLEKRLLSRGKSSGRTDDNAETAKRRFQTYVEMTLP 326          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: A0A835YW75_9STRA (UMP-CMP kinase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW75_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.020e-51
Identity = 91/142 (64.08%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVAEVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            YVHLSAGELLRQ RESGS +G L+DE++REGRIVPV +++GLL+KAM ASG   RFL+DGFPRN DN                GWE  M   A+V CVLF +CPE VLE RLL RG SSGR+DDN +SA+KRFRTYVETTLP
Sbjct:   31 YVHLSAGELLRQARESGSEEGALLDEYLREGRIVPVELSLGLLRKAMIASG-GTRFLIDGFPRNQDNLD--------------GWERIMGKEADVTCVLFLECPESVLEARLLHRGLSSGRSDDNLESARKRFRTYVETTLP 157          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: A0A7S2XUB9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUB9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.210e-49
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVAEVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            +VHLSAGELLRQER SGS DGQ+I++FI+EG+IVPVA+T+GLL+KAM+AS    RFL+DGFPRN DN +              GWE  M   A+V CVLF +CPE  LE+RLL RG +SGRTDDN +SA+KRF+TYVE+T+P
Sbjct:   18 FVHLSAGELLRQERASGSPDGQMIEDFIKEGKIVPVAVTLGLLRKAMEAS-KGNRFLIDGFPRNWDNIQ--------------GWEEVMGGQAQVDCVLFIECPEAELERRLLHRGETSGRTDDNIESARKRFKTYVESTMP 144          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: UPI00106D6E0D (UMP-CMP kinase-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D6E0D)

HSP 1 Score: 161 bits (408), Expect = 1.090e-47
Identity = 81/142 (57.04%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVAEVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            +VHLSAGELLRQER+SGS DG LI ++I+EG+IVPVAIT+ LL+KAM+ S P  RFLVDGFPRN DN +              GW   M  + +V+CVLFFDCPE+   +R++ RG++SGRTDDN  S +KRF+TY E T+P
Sbjct:   32 FVHLSAGELLRQERDSGSKDGNLIQDYIKEGKIVPVAITISLLQKAMKNS-PVKRFLVDGFPRNEDNLQ--------------GWSERMDGIVDVKCVLFFDCPEEECIRRIVERGKTSGRTDDNIDSLRKRFKTYKEQTMP 158          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: H3GA88_PHYRM (UMP-CMP kinase n=17 Tax=Phytophthora TaxID=4783 RepID=H3GA88_PHYRM)

HSP 1 Score: 153 bits (386), Expect = 2.640e-44
Identity = 79/143 (55.24%), Postives = 108/143 (75.52%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAM-ADVAEVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            +VHLSAG+LLR+ER+SGS++G+LID  I+EG+IVPV IT+ LL++AM  SG    FL+DGFPRN DN +              GW+  M AD  +V+ VLF+DCPE V+EQRLL RG++SGR+DDNA++ +KRFRTY+++T+P
Sbjct:   33 FVHLSAGDLLREERQSGSANGELIDRMIKEGQIVPVKITLSLLQQAMVKSGRDL-FLIDGFPRNFDNLQ--------------GWQEEMSADEFQVQGVLFYDCPESVMEQRLLERGKTSGRSDDNAEAIRKRFRTYLDSTMP 160          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: A0A2D4BMP7_PYTIN (UMP-CMP kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMP7_PYTIN)

HSP 1 Score: 152 bits (385), Expect = 3.970e-44
Identity = 79/143 (55.24%), Postives = 105/143 (73.43%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVA-EVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            +VHLSAG+LLR+ER+SGS +G+LID  I+EG+IVPV IT+ LL++AM  SG    FL+DGFPRN DN +              GW+  M D    V  VLF+DCPE+V+E+RLL RG++SGRTDDNA++ +KRFRTY+E+T+P
Sbjct:   33 FVHLSAGDLLREERQSGSENGELIDRMIKEGQIVPVQITLSLLQQAMIVSGREL-FLIDGFPRNFDNLQ--------------GWQEQMPDEDYHVEGVLFYDCPENVMEERLLERGKTSGRTDDNAEAIRKRFRTYIESTMP 160          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: A0A8J6CCM6_DIALT (UMP-CMP kinase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCM6_DIALT)

HSP 1 Score: 157 bits (397), Expect = 4.910e-44
Identity = 83/142 (58.45%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVAEVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            Y+HLSAG+LLR  R++GSS+GQLIDE+IREGRIVPV IT+ LL+KAM ASG  +RFL+DGFPRN DN                GW S M +VA V  VL +DC E V+E RLL RG++SGR DDNA + KKRF TY   T+P
Sbjct:  127 YIHLSAGDLLRAARQAGSSEGQLIDEYIREGRIVPVEITVALLRKAMAASG-GSRFLIDGFPRNGDNL--------------AGWHSQMGEVAHVGGVLMYDCAEAVMEARLLERGKTSGRADDNAAAIKKRFATYRAETMP 253          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: F0WKG9_9STRA (UMP-CMP kinase n=3 Tax=Albugo TaxID=65356 RepID=F0WKG9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.990e-44
Identity = 81/143 (56.64%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVA-EVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            +VHLSAG+LLR+ER+SGS +G+LID  I+EG+IVPV IT+GLL++AM       RFL+DGFPRN DN +              GW  AM D    V  VLFFDC E V+E RL+ RGR+SGRTDDNA++ +KRFRTY+E+TLP
Sbjct:   33 FVHLSAGDLLREERQSGSENGELIDMMIKEGQIVPVKITLGLLQRAM-LQNERERFLIDGFPRNFDNLQ--------------GWNEAMPDTQFHVEGVLFFDCSEIVMESRLIERGRTSGRTDDNAEAIRKRFRTYLESTLP 160          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: A7SJH0_NEMVE (UMP-CMP kinase n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SJH0_NEMVE)

HSP 1 Score: 151 bits (382), Expect = 9.730e-44
Identity = 78/142 (54.93%), Postives = 99/142 (69.72%), Query Frame = 1
Query:    1 YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVAEVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            YVHLSAGELLR+ER SGS DG LI+  + EG+IVPVAIT+ LL+KAM A     +FL+DGFPRN DN +              GWES M D  +V+ VLFF+CPED+   R++SRG+SSGR DDN +S +KRF T+  +T+P
Sbjct:   33 YVHLSAGELLREERRSGSKDGDLIENCMTEGKIVPVAITVSLLQKAM-AKSDVQKFLIDGFPRNEDNLQ--------------GWESRMNDKVDVKAVLFFECPEDICIGRIMSRGQSSGRPDDNIESLRKRFHTHENSTMP 159          
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Match: A0A7S2SV26_9STRA (UMP-CMP kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV26_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.520e-43
Identity = 80/141 (56.74%), Postives = 102/141 (72.34%), Query Frame = 1
Query:    4 VHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQASGPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVAEVRCVLFFDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLP 426
            VHLSAGELLR+ER SGS DGQLI+E++R+GRIVPV+I++GLL++AM     +  FLVDGFPRN DN +              GW   M D AEV CVLF DCPE+  E+RLL RG +SGR+DDN +SA+KRF+T+ + T+P
Sbjct:  109 VHLSAGELLRKERASGSPDGQLIEEYLRDGRIVPVSISLGLLRQAMDGDAGSC-FLVDGFPRNWDNVE--------------GWNELMQDSAEVLCVLFLDCPEEEQERRLLIRGETSGRSDDNLESARKRFKTFHQETMP 234          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10270.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPH2_ECTSI8.820e-5667.61UMP-CMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YW75_9STRA4.020e-5164.08UMP-CMP kinase n=2 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2XUB9_9STRA1.210e-4961.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI00106D6E0D1.090e-4757.04UMP-CMP kinase-like n=1 Tax=Dendronephthya gigante... [more]
H3GA88_PHYRM2.640e-4455.24UMP-CMP kinase n=17 Tax=Phytophthora TaxID=4783 Re... [more]
A0A2D4BMP7_PYTIN3.970e-4455.24UMP-CMP kinase n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A8J6CCM6_DIALT4.910e-4458.45UMP-CMP kinase n=1 Tax=Diacronema lutheri TaxID=20... [more]
F0WKG9_9STRA4.990e-4456.64UMP-CMP kinase n=3 Tax=Albugo TaxID=65356 RepID=F0... [more]
A7SJH0_NEMVE9.730e-4454.93UMP-CMP kinase n=2 Tax=Nematostella vectensis TaxI... [more]
A0A7S2SV26_9STRA1.520e-4356.74UMP-CMP kinase n=1 Tax=Rhizochromulina marina TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10270contigF-distichus_contig10270:5379..6119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue3e-46
Seed eggNOG ortholog2880.D7FPH2
KEGG rclassRC00002
KEGG koko:K13800
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00052
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytidylate kinase activity
EggNOG OGsCOG0563@1,KOG3079@2759
Ec32 ortholog descriptionAdenylate kinase/UMP-CMP kinase
Ec32 orthologEc-14_004920.1
EC2.7.4.14
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.062711-CDS-F-distichus_contig10270:5378..56271622928944.062711-CDS-F-distichus_contig10270:5378..5627Fucus distichus monoicousCDSF-distichus_contig10270 5379..5627 +
1690885076.452155-CDS-F-distichus_contig10270:5378..56271690885076.452155-CDS-F-distichus_contig10270:5378..5627Fucus distichus monoicousCDSF-distichus_contig10270 5379..5627 +
1622928944.0862057-CDS-F-distichus_contig10270:5921..61191622928944.0862057-CDS-F-distichus_contig10270:5921..6119Fucus distichus monoicousCDSF-distichus_contig10270 5922..6119 +
1690885076.4658487-CDS-F-distichus_contig10270:5921..61191690885076.4658487-CDS-F-distichus_contig10270:5921..6119Fucus distichus monoicousCDSF-distichus_contig10270 5922..6119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10270.237.1prot_F-distichus_contig10270.237.1Fucus distichus monoicouspolypeptideF-distichus_contig10270 5379..6119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10270.237.1

>prot_F-distichus_contig10270.237.1 ID=prot_F-distichus_contig10270.237.1|Name=mRNA_F-distichus_contig10270.237.1|organism=Fucus distichus monoicous|type=polypeptide|length=149bp
YVHLSAGELLRQERESGSSDGQLIDEFIREGRIVPVAITMGLLKKAMQAS
GPAARFLVDGFPRNSDNRKASSWRKLREAEKHGGWESAMADVAEVRCVLF
FDCPEDVLEQRLLSRGRSSGRTDDNAKSAKKRFRTYVETTLPASPRRG*
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mRNA from alignment at F-distichus_contig10270:5379..6119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10270.237.1 ID=mRNA_F-distichus_contig10270.237.1|Name=mRNA_F-distichus_contig10270.237.1|organism=Fucus distichus monoicous|type=mRNA|length=741bp|location=Sequence derived from alignment at F-distichus_contig10270:5379..6119+ (Fucus distichus monoicous)
TACGTTCATCTTTCAGCGGGAGAGCTGCTGCGTCAGGAGCGCGAGAGCGG CTCCAGCGACGGCCAGCTGATTGACGAGTTTATTCGAGAGGGCCGCATCG TGCCGGTCGCCATAACAATGGGCCTGCTGAAGAAAGCCATGCAGGCCAGC GGACCTGCGGCAAGGTTCCTGGTTGATGGCTTCCCCCGCAACAGCGACAA CCGCAAGGCGAGCAGCTGGCGAAAGCTCAGAGAGGCCGAAAAGCACGGGG TTTTGCACAAGCACCGCATTCGGCGAATGCCACGGTCGGGTAGGCAGTGC ACCGCTAAGTGACTAAGCGCGAAGACTATGTACGCGCAGCCGTTCTCCCT GGCCCGTCGTTGCGCCTCTTTCCCGTCTTCTCCAATAACACAATTAACAC TTTACTGTCCGTCCAAAAAAACAAGGCGCCCAGGAACTTTGTCTCAATCG CACATTTTGAAACCGCCGCGATGTCCATACGTCCGTTGTCGTTTAACGTT CTGTCTGTGAATTTGTTCTCTTGGCGGGGGGAGGAGGGGACAGGGTTGGG AATCTGCCATGGCCGACGTAGCTGAGGTGCGATGCGTTCTCTTCTTCGAT TGTCCGGAGGACGTCCTAGAGCAGCGGCTACTCTCCAGAGGCAGGAGCAG CGGACGGACCGATGACAACGCGAAGTCAGCGAAGAAACGCTTCCGGACGT ATGTCGAAACGACCTTACCGGCAAGTCCGCGCAGAGGCTAA
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Coding sequence (CDS) from alignment at F-distichus_contig10270:5379..6119+

>mRNA_F-distichus_contig10270.237.1 ID=mRNA_F-distichus_contig10270.237.1|Name=mRNA_F-distichus_contig10270.237.1|organism=Fucus distichus monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at F-distichus_contig10270:5379..6119+ (Fucus distichus monoicous)
TACGTTCATCTTTCAGCGGGAGAGCTGCTGCGTCAGGAGCGCGAGAGCGG
CTCCAGCGACGGCCAGCTGATTGACGAGTTTATTCGAGAGGGCCGCATCG
TGCCGGTCGCCATAACAATGGGCCTGCTGAAGAAAGCCATGCAGGCCAGC
GGACCTGCGGCAAGGTTCCTGGTTGATGGCTTCCCCCGCAACAGCGACAA
CCGCAAGGCGAGCAGCTGGCGAAAGCTCAGAGAGGCCGAAAAGCACGGGT
ACGTTCATCTTTCAGCGGGAGAGCTGCTGCGTCAGGAGCGCGAGAGCGGC
TCCAGCGACGGCCAGCTGATTGACGAGTTTATTCGAGAGGGCCGCATCGT
GCCGGTCGCCATAACAATGGGCCTGCTGAAGAAAGCCATGCAGGCCAGCG
GACCTGCGGCAAGGTTCCTGGTTGATGGCTTCCCCCGCAACAGCGACAAC
CGCAAGGCGAGCAGCTGGCGAAAGCTCAGAGAGGCCGAAAAGCACGGGGG
TTGGGAATCTGCCATGGCCGACGTAGCTGAGGTGCGATGCGTTCTCTTCT
TCGATTGTCCGGAGGACGTCCTAGAGCAGCGGCTACTCTCCAGAGGCAGG
AGCAGCGGACGGACCGATGACAACGCGAAGTCAGCGAAGAAACGCTTCCG
GACGTATGTCGAAACGACCTTACCGGCAAGTCCGCGCAGAGGCTAAGGTT
GGGAATCTGCCATGGCCGACGTAGCTGAGGTGCGATGCGTTCTCTTCTTC
GATTGTCCGGAGGACGTCCTAGAGCAGCGGCTACTCTCCAGAGGCAGGAG
CAGCGGACGGACCGATGACAACGCGAAGTCAGCGAAGAAACGCTTCCGGA
CGTATGTCGAAACGACCTTACCGGCAAGTCCGCGCAGAGGCTAA
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