mRNA_F-distichus_contig102649.231.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102649.231.1
Unique NamemRNA_F-distichus_contig102649.231.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Match: D7G982_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G982_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.120e-24
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   10 PQTQWLKVHDHDVPVRRCPGLAEGVDALNTP---------GPGV-------MPHINGVKHIKKISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVYVGTSRTA 282
            P   W K+ DHDVP RRCPGL E V A  +          GP V       +PH+NGVKH+KKIS D++V+I  VK    W L++ QISLTDVFRYS++YV T+ TA
Sbjct:  204 PLKDWRKIQDHDVPARRCPGLVESVSAAASELAMDPDAVWGPEVDLVVQQVLPHVNGVKHVKKISRDSQVEIAAVKAALRWVLYTNQISLTDVFRYSNIYVQTTTTA 310
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BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Match: A0A1S3HQR9_LINUN (GATOR complex protein NPRL2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HQR9_LINUN)

HSP 1 Score: 55.5 bits (132), Expect = 7.090e-7
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   10 PQTQWLKVHDHDVPVRRCPGLAEGVDALNTPGPGVMPHINGVKHIKKISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVYVGT 270
            P    L+V DHDVP+          +  +     ++P+I+G  H+ +ISV+T+V+I+LVK      LH   I++  +F+YS+VY  T
Sbjct:  162 PHEDALEVADHDVPIFLSSKNNFQRNQWDLTTQQIIPYIDGFNHVARISVETDVEINLVKGCVQNLLHFNIIAIISIFQYSNVYTVT 248
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BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Match: A0A2P6NLU6_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NLU6_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 7.150e-7
Identity = 29/85 (34.12%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   31 VHDHDVPVRRCPGLAEGVDALNTPG-----PGVMPHINGVKHIKKISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVYVGT 270
            V +H VP+     + + +D L++         V+PHI+G+ HIKKIS  ++V +D V++     ++ K +SL D+F+YS++Y  T
Sbjct:  178 VMEHQVPI-----ITQDIDLLSSRQWDLAVQQVLPHIDGINHIKKISTLSKVSLDTVQKCIQQLMYLKYVSLVDIFQYSNIYTCT 257
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BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Match: H2YTV6_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YTV6_CIOSA)

HSP 1 Score: 52.4 bits (124), Expect = 8.660e-6
Identity = 26/82 (31.71%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   31 VHDHDVPVRRCPGLAEGVDALNTPGPGVMPHINGVKHIKKISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVYVGTSR 276
            V+DH VP+   P  +  +   +     ++P I+G +H++KI V  +VD+DL K         K + L  +F+YS+VY+ T++
Sbjct:  177 VYDHHVPILTVPKDSIILSEWDLTTQQILPFIDGFRHVQKIGVLADVDVDLAKICIQNLAFYKHVRLISIFQYSNVYITTAK 258
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BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Match: D3BHR5_POLPP (NPR2 family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BHR5_POLPP)

HSP 1 Score: 52.0 bits (123), Expect = 1.180e-5
Identity = 30/91 (32.97%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:    4 NKPQTQWLKVHDHDVPVRRCPGLAEGVDALNTPGPG-----VMPHINGVKHIKKISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVY 261
            NKP  + +++ DH VPV     L E +D  N          ++P+I+GV ++ +IS  TE+DI+LVK      ++   + + D+F+YS++Y
Sbjct:  162 NKPP-EPIEILDHQVPV-----LIEEIDTSNASEWDLTLLQILPYIDGVNYVSRISKLTEIDINLVKSCIKHLVYYSIVKMVDIFQYSNIY 246
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BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Match: A0A0D2WNG4_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WNG4_CAPO3)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-5
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   31 VHDHDVPVRRCPGLAEGVDALNTPGPGVMPHINGVKHIKKISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVYVGTS 273
            V DH VP+          +A +     ++PHI+G+ H+K+I+V  +VDI+LV++     L+   I L D+F+Y + Y  TS
Sbjct:  179 VPDHKVPIFIAERRRFASEAWDLTMQQILPHIDGINHVKRIAVLCDVDIELVRQCLQHLLYYGIIILIDIFQYGNRYSVTS 259
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BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Match: UPI000719DA7E (nitrogen permease regulator 2-like protein isoform X1 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DA7E)

HSP 1 Score: 50.4 bits (119), Expect = 4.140e-5
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   28 KVHDHDVPVR--RCPGLAEGVDALNTPGPGVMPHINGVKHIKKISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVYVGTSR 276
            +VH +DVP+   +C         L T    ++P+I+G++H+ +ISV+++V I LVK      L+   I L  +F+YS+VY  TS+
Sbjct:  182 EVHMYDVPIFTVQCDSFHSHQWDLTTQQ--ILPYIDGMRHVARISVESDVAISLVKSCLQNMLYYGIIKLLPIFQYSNVYTVTSK 264
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BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Match: A0A099P0G1_PICKU (Uncharacterized protein n=4 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099P0G1_PICKU)

HSP 1 Score: 50.1 bits (118), Expect = 5.970e-5
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   31 VHDHDVPVRRCPGLAEGVDALNTPGP-GVMPHINGVKHIKKISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVYVGTS 273
            +H +DVP+     L   +D+L  P    ++P ING+  + KISV +  D++L KE     LH   I++ D+F++S+ Y+ TS
Sbjct:  402 IHSYDVPIAILK-LDSLIDSLWDPTMLKIVPFINGINSVYKISVLSNADLNLTKECIRHLLHYNAITILDIFQFSNHYMVTS 482
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102649.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G982_ECTSI3.120e-2450.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1S3HQR9_LINUN7.090e-734.48GATOR complex protein NPRL2 n=1 Tax=Lingula unguis... [more]
A0A2P6NLU6_9EUKA7.150e-734.12Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
H2YTV6_CIOSA8.660e-631.71Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]
D3BHR5_POLPP1.180e-532.97NPR2 family protein n=1 Tax=Polysphondylium pallid... [more]
A0A0D2WNG4_CAPO31.620e-534.57Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
UPI000719DA7E4.140e-535.29nitrogen permease regulator 2-like protein isoform... [more]
A0A099P0G1_PICKU5.970e-535.37Uncharacterized protein n=4 Tax=Pichia kudriavzevi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102649contigF-distichus_contig102649:325..1687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog2880.D7G982
Preferred nameNPR2
KEGG rclassRC00002
KEGG koko:K17686,ko:K20405
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,ko04150,map01524,map04016,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006950,GO:0006995,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010647,GO:0010648,GO:0015711,GO:0015804,GO:0015824,GO:0015840,GO:0015849,GO:0016020,GO:0016241,GO:0019222,GO:0019755,GO:0019898,GO:0023051,GO:0023057,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032879,GO:0032890,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035859,GO:0042221,GO:0042493,GO:0042594,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043562,GO:0044070,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051716,GO:0051952,GO:0051955,GO:0065007,GO:0070881,GO:0071496,GO:0071702,GO:0071705,GO:0080134,GO:0080135,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1903832,GO:1903833,GO:1904262,GO:1990130,GO:1990928,GO:2000785
EggNOG free text desc.regulation of autophagosome assembly
EggNOG OGsKOG3789@1,KOG3789@2759
EC3.6.3.54
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size282
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102649.231.1prot_F-distichus_contig102649.231.1Fucus distichus monoicouspolypeptideF-distichus_contig102649 325..1687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.3605566-CDS-F-distichus_contig102649:324..4351622928943.3605566-CDS-F-distichus_contig102649:324..435Fucus distichus monoicousCDSF-distichus_contig102649 325..435 +
1690885076.1352072-CDS-F-distichus_contig102649:324..4351690885076.1352072-CDS-F-distichus_contig102649:324..435Fucus distichus monoicousCDSF-distichus_contig102649 325..435 +
1622928943.3742013-CDS-F-distichus_contig102649:668..7251622928943.3742013-CDS-F-distichus_contig102649:668..725Fucus distichus monoicousCDSF-distichus_contig102649 669..725 +
1690885076.1482298-CDS-F-distichus_contig102649:668..7251690885076.1482298-CDS-F-distichus_contig102649:668..725Fucus distichus monoicousCDSF-distichus_contig102649 669..725 +
1622928943.387767-CDS-F-distichus_contig102649:1573..16871622928943.387767-CDS-F-distichus_contig102649:1573..1687Fucus distichus monoicousCDSF-distichus_contig102649 1574..1687 +
1690885076.1564417-CDS-F-distichus_contig102649:1573..16871690885076.1564417-CDS-F-distichus_contig102649:1573..1687Fucus distichus monoicousCDSF-distichus_contig102649 1574..1687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102649.231.1

>prot_F-distichus_contig102649.231.1 ID=prot_F-distichus_contig102649.231.1|Name=mRNA_F-distichus_contig102649.231.1|organism=Fucus distichus monoicous|type=polypeptide|length=94bp
MNKPQTQWLKVHDHDVPVRRCPGLAEGVDALNTPGPGVMPHINGVKHIKK
ISVDTEVDIDLVKEVTLWSLHSKQISLTDVFRYSSVYVGTSRTA
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mRNA from alignment at F-distichus_contig102649:325..1687+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102649.231.1 ID=mRNA_F-distichus_contig102649.231.1|Name=mRNA_F-distichus_contig102649.231.1|organism=Fucus distichus monoicous|type=mRNA|length=1363bp|location=Sequence derived from alignment at F-distichus_contig102649:325..1687+ (Fucus distichus monoicous)
ATGAACAAACCACAAACGCAGTGGTTGAAGGTGCACGATCACGACGTACC
GGTCCGACGGTGCCCTGGACTCGCCGAGGGGGTGGACGCGCTCAACACCC
CCGGGCCTGGAGTGGCGCAAGCGGAGACGCACTTCGATATGGCGCTCATG
CAGGCACGCGCCCCCCCAAAAAGACTTAACTGTAGTAACGATGCCCTACC
GCCTAAGCCCTTGAACAACCATTCCACACCGCCTACTACTCTGTGGAAAC
TCCCCCACACCGCCTACTCCATGGCAACCCCCCCCCACCATATTTCGCTG
TGTTTTACGCACGGTTCGCTTCGACTTCACCCGTGGCATCGCAGGTAATG
CCGCACATAAACGGCGTCAAGCACATCAAGAAAATCTCGGTGGATACTGA
GGTGCAGTAGAAAAAAAGTAGAAACGAGGGGTCTGGTGTTTGATGTCCGG
CTGGATTTTTCCAAGCCCTGGCTCTTTTATGGCAAGATCGACGTGTTTTA
GGGACAGCTACTGTTTGCAATCCTCCGTGGAGCAAGTAACCCACATCCGT
AGCACGTTTGTAGCCGTTGCGTTTTTTGTTGTTGTTGCAGGATTGGGAAA
AACCGCTTTTATTGATTTCTACGTGTACTACTGAACGGGTAATCAATCCG
CTCTTTGAAATAGACTTGGCTATACAGTTGGATCGAGATAAATTCCTGTA
CATTTTTTTTCAAAATATTATGGAGGCATTCCCCTTGCCCTCTACAAACA
CCCTCGGATGCGACCTTTTGGACTACATTTTTCTTACGGTTGGTTGGTTG
GTTTGTCGAACGGCGTTTTTTTTTGTTTTGTTTTTTGGCCGATGTCCATC
GCGCCCCCCCTCCCCCCCCTACCCCAACAAACAGAAAACCCCGTTACACT
GGTATCAAATAGTAGTACCTGATTGATGGTGCACTTGGTATTCCCGATAT
CGGTTTTATTTCGACTGAGTAATTGTATTAGAAATAGTATTAGAAATGGT
TTTTGATGGGAGCTGGCGGAGAGCTAGAGCTCTCTGCTGTCTTTCTCTCG
CGGTGGTCGTAAGAGGATCAGAGGATCGATGCGCCTTTGTGTAAAAACAA
AAGATATGTGTCCCCGAGGGACTTTAGACTTGAGGGCTTCGGGGCGCTTC
CATGCACGTCGCACAGGGAACAGCTATTAATATGCATAGCTCTGCATGGT
GTGTGACGTTCCACACACTTTCATCTGCCCCGTGTTATTAATGCGACAGG
TCGACATCGACCTCGTGAAGGAAGTGACCCTGTGGTCGTTGCACTCCAAG
CAGATCAGCCTGACAGACGTCTTCCGCTACAGCAGCGTTTATGTGGGCAC
CAGCCGCACCGCC
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Coding sequence (CDS) from alignment at F-distichus_contig102649:325..1687+

>mRNA_F-distichus_contig102649.231.1 ID=mRNA_F-distichus_contig102649.231.1|Name=mRNA_F-distichus_contig102649.231.1|organism=Fucus distichus monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at F-distichus_contig102649:325..1687+ (Fucus distichus monoicous)
ATGAACAAACCACAAACGCAGTGGTTGAAGGTGCACGATCACGACGTACC
GGTCCGACGGTGCCCTGGACTCGCCGAGGGGGTGGACGCGCTCAACACCC
CCGGGCCTGGAATGAACAAACCACAAACGCAGTGGTTGAAGGTGCACGAT
CACGACGTACCGGTCCGACGGTGCCCTGGACTCGCCGAGGGGGTGGACGC
GCTCAACACCCCCGGGCCTGGAGTAATGCCGCACATAAACGGCGTCAAGC
ACATCAAGAAAATCTCGGTGGATACTGAGGTAATGCCGCACATAAACGGC
GTCAAGCACATCAAGAAAATCTCGGTGGATACTGAGGTCGACATCGACCT
CGTGAAGGAAGTGACCCTGTGGTCGTTGCACTCCAAGCAGATCAGCCTGA
CAGACGTCTTCCGCTACAGCAGCGTTTATGTGGGCACCAGCCGCACCGCC
GTCGACATCGACCTCGTGAAGGAAGTGACCCTGTGGTCGTTGCACTCCAA
GCAGATCAGCCTGACAGACGTCTTCCGCTACAGCAGCGTTTATGTGGGCA
CCAGCCGCACCGCC
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