mRNA_F-distichus_contig102634.230.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102634.230.1
Unique NamemRNA_F-distichus_contig102634.230.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: UPI000C768EDA (TATA element modulatory factor-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C768EDA)

HSP 1 Score: 87.4 bits (215), Expect = 6.670e-18
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 LEGQVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHS-LAQVQERERS 306
            LE ++ N+Q +L + E +SS REE  R+E  +LR RLE S++RHEDLAES  QA+KP+LRQ+E+LQS++++     +R+E S++ERL +A + LA  QERERS
Sbjct:  757 LESRIANIQAALSLSENSSSVREEANRREQEALRMRLEASENRHEDLAESISQASKPILRQVESLQSALKQCQDNSDRIELSLTERLRLATTNLAAAQERERS 859
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: UPI001C71E05E (TATA element modulatory factor isoform X2 n=3 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C71E05E)

HSP 1 Score: 67.4 bits (163), Expect = 7.150e-11
Identity = 40/100 (40.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHS-LAQVQERERS 306
            Q+ +L+ SL   E+ ++ RE+M++ EI+SL++RL+++D+R+EDL ++   AT+PL+RQIE LQ++    T   E++E+++++RL  A + +A + ERER+
Sbjct:  942 QMQDLRSSLSRSEEEANLREKMFKSEIASLQKRLQEADERNEDLTKNMSSATRPLVRQIENLQATFTAQTISWEKIEKNLTDRLSDAQNQIAVLSERERA 1041
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: UPI0006C98811 (TATA element modulatory factor isoform X1 n=4 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C98811)

HSP 1 Score: 67.0 bits (162), Expect = 9.740e-11
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERL-EVAHSLAQVQERERSL 309
            Q+V L+  ++  E+ +   EE++RQE   + RRLE ++ R ED+AES  Q T+PLLRQIE LQSS+   T++  + E+SM+ER+ E+   L  + E  RSL
Sbjct:  910 QIVELKKKIREMEEENVKTEELHRQEKQEILRRLEGAESRSEDMAESLAQTTRPLLRQIEQLQSSLTHKTNLYMKQEESMTERINELEVKLENIMETNRSL 1010
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: A0A8B6GXZ4_MYTGA (TATA element modulatory factor n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GXZ4_MYTGA)

HSP 1 Score: 66.2 bits (160), Expect = 1.750e-10
Identity = 43/98 (43.88%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERL-EVAHSLAQVQERE 300
            Q+ +L+ S+Q  E+  + RE+M RQEIS L+ +L++ + R++DL+++   AT+PLLRQIE LQS+  + ++  E+VE+++S+RL E    LA V ERE
Sbjct:  277 QIEDLRLSMQRMEKEHNRREDMLRQEISDLQVQLQEDEARNQDLSQNVTSATRPLLRQIENLQSTFAQQSASWEKVEKNLSDRLYEAQTQLAMVTERE 374
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: A0A8C0KGZ7_CANLU (TATA element modulatory factor 1 n=1 Tax=Canis lupus dingo TaxID=286419 RepID=A0A8C0KGZ7_CANLU)

HSP 1 Score: 65.9 bits (159), Expect = 2.450e-10
Identity = 42/100 (42.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHSL-AQVQERERS 306
            QV +L+ +LQ  EQA++ +E+  R EIS L++RL+++++R+++L++S    T+PLLRQIE LQ+++   TS  E++E+++S+RL  + +L A   ERER+
Sbjct:  606 QVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERA 705
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: A0A7N9CRF4_MACFA (TATA element modulatory factor 1 n=6 Tax=Euarchontoglires TaxID=314146 RepID=A0A7N9CRF4_MACFA)

HSP 1 Score: 65.9 bits (159), Expect = 2.450e-10
Identity = 42/100 (42.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHSL-AQVQERERS 306
            QV +L+ +LQ  EQA++ +E+  R EIS L++RL+++++R+++L++S    T+PLLRQIE LQ+++   TS  E++E+++S+RL  + +L A   ERER+
Sbjct:  608 QVGDLRLALQRTEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERA 707
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: A0A287ALW5_PIG (TATA element modulatory factor 1 n=3 Tax=Suina TaxID=35497 RepID=A0A287ALW5_PIG)

HSP 1 Score: 65.9 bits (159), Expect = 2.450e-10
Identity = 42/100 (42.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHSL-AQVQERERS 306
            QV +L+ +LQ  EQA++ +E+  R EIS L++RL+++++R+++L++S    T+PLLRQIE LQ+++   TS  E++E+++S+RL  + +L A   ERER+
Sbjct:  609 QVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERA 708
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: A0A8D1UWV0_PIG (TMF_TATA_bd domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1UWV0_PIG)

HSP 1 Score: 65.9 bits (159), Expect = 2.450e-10
Identity = 42/100 (42.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHSL-AQVQERERS 306
            QV +L+ +LQ  EQA++ +E+  R EIS L++RL+++++R+++L++S    T+PLLRQIE LQ+++   TS  E++E+++S+RL  + +L A   ERER+
Sbjct:  609 QVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERA 708
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: A0A5F9CQ32_RABIT (TATA element modulatory factor 1 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5F9CQ32_RABIT)

HSP 1 Score: 65.9 bits (159), Expect = 2.450e-10
Identity = 42/100 (42.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHSL-AQVQERERS 306
            QV +L+ +LQ  EQA++ +E+  R EIS L++RL+++++R+++L++S    T+PLLRQIE LQ+++   TS  E++E+++S+RL  + +L A   ERER+
Sbjct:  610 QVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERA 709
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BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Match: A0A667HBL1_LYNCA (TATA element modulatory factor 1 n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A667HBL1_LYNCA)

HSP 1 Score: 65.5 bits (158), Expect = 3.340e-10
Identity = 42/100 (42.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:   10 QVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAESAGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHSL-AQVQERERS 306
            QV +L+ +LQ  EQA++ RE+  R EI  L++RL+++++R+++L++S    T+PLLRQIE LQ+++   TS  E++E+++S+RL  + +L A   ERER+
Sbjct:  606 QVGDLRLALQRAEQAAARREDYLRHEIGELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERA 705
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102634.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C768EDA6.670e-1851.46TATA element modulatory factor-like n=1 Tax=Euryte... [more]
UPI001C71E05E7.150e-1140.00TATA element modulatory factor isoform X2 n=3 Tax=... [more]
UPI0006C988119.740e-1143.56TATA element modulatory factor isoform X1 n=4 Tax=... [more]
A0A8B6GXZ4_MYTGA1.750e-1043.88TATA element modulatory factor n=3 Tax=Mytilus gal... [more]
A0A8C0KGZ7_CANLU2.450e-1042.00TATA element modulatory factor 1 n=1 Tax=Canis lup... [more]
A0A7N9CRF4_MACFA2.450e-1042.00TATA element modulatory factor 1 n=6 Tax=Euarchont... [more]
A0A287ALW5_PIG2.450e-1042.00TATA element modulatory factor 1 n=3 Tax=Suina Tax... [more]
A0A8D1UWV0_PIG2.450e-1042.00TMF_TATA_bd domain-containing protein n=1 Tax=Sus ... [more]
A0A5F9CQ32_RABIT2.450e-1042.00TATA element modulatory factor 1 n=2 Tax=Boreoeuth... [more]
A0A667HBL1_LYNCA3.340e-1042.00TATA element modulatory factor 1 n=2 Tax=Laurasiat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102634contigF-distichus_contig102634:872..1183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score65.9
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog9707.XP_004404626.1
Preferred nameTMF1
KEGG koko:K20286
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0001675,GO:0001817,GO:0001819,GO:0003006,GO:0003008,GO:0003674,GO:0003712,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0006952,GO:0006996,GO:0006997,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009889,GO:0009892,GO:0009894,GO:0009914,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010817,GO:0010927,GO:0010941,GO:0012505,GO:0014070,GO:0016020,GO:0016043,GO:0016050,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030154,GO:0030162,GO:0030317,GO:0031090,GO:0031323,GO:0031326,GO:0031329,GO:0031984,GO:0032268,GO:0032274,GO:0032275,GO:0032368,GO:0032370,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032879,GO:0032940,GO:0032989,GO:0033327,GO:0033363,GO:0034641,GO:0034645,GO:0034654,GO:0040011,GO:0042176,GO:0042221,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0046483,GO:0046546,GO:0046661,GO:0046879,GO:0046883,GO:0046887,GO:0046903,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050886,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060548,GO:0060986,GO:0061136,GO:0061458,GO:0065007,GO:0065008,GO:0070887,GO:0070925,GO:0071310,GO:0071407,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097722,GO:0098542,GO:0098588,GO:0098791,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903050,GO:1903362,GO:1903506,GO:1903530,GO:1903532,GO:1905952,GO:1905954,GO:2000112,GO:2000843,GO:2000845,GO:2001141
EggNOG free text desc.TATA element modulatory factor
EggNOG OGs38G0Z@33154,3BJ8E@33208,3CXIE@33213,3EKWC@33554,3JBVZ@40674,481JV@7711,4957U@7742,KOG4673@1,KOG4673@2759
COG Functional cat.K
Best tax levelCarnivora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.298358-CDS-F-distichus_contig102634:871..11831622928943.298358-CDS-F-distichus_contig102634:871..1183Fucus distichus monoicousCDSF-distichus_contig102634 872..1183 +
1690885076.117543-CDS-F-distichus_contig102634:871..11831690885076.117543-CDS-F-distichus_contig102634:871..1183Fucus distichus monoicousCDSF-distichus_contig102634 872..1183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102634.230.1prot_F-distichus_contig102634.230.1Fucus distichus monoicouspolypeptideF-distichus_contig102634 872..1183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102634.230.1

>prot_F-distichus_contig102634.230.1 ID=prot_F-distichus_contig102634.230.1|Name=mRNA_F-distichus_contig102634.230.1|organism=Fucus distichus monoicous|type=polypeptide|length=104bp
LEGQVVNLQDSLQMQEQASSGREEMYRQEISSLRRRLEQSDDRHEDLAES
AGQATKPLLRQIETLQSSVREVTSVQERVEQSMSERLEVAHSLAQVQERE
RSL*
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mRNA from alignment at F-distichus_contig102634:872..1183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102634.230.1 ID=mRNA_F-distichus_contig102634.230.1|Name=mRNA_F-distichus_contig102634.230.1|organism=Fucus distichus monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at F-distichus_contig102634:872..1183+ (Fucus distichus monoicous)
CTGGAGGGGCAGGTGGTGAACTTGCAGGACAGCCTGCAGATGCAGGAGCA
GGCCAGCAGCGGGAGGGAGGAGATGTACAGGCAGGAGATCTCCTCGCTGA
GGCGGAGGCTGGAGCAAAGTGATGACAGACATGAGGACTTGGCTGAGAGT
GCTGGGCAGGCTACTAAGCCTTTACTGAGACAGATTGAGACCTTGCAGTC
CAGTGTGAGAGAGGTGACCAGTGTGCAGGAGAGGGTGGAGCAGAGCATGT
CCGAGAGGTTGGAGGTGGCCCACAGCCTGGCTCAGGTGCAGGAGAGGGAG
AGAAGTTTGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig102634:872..1183+

>mRNA_F-distichus_contig102634.230.1 ID=mRNA_F-distichus_contig102634.230.1|Name=mRNA_F-distichus_contig102634.230.1|organism=Fucus distichus monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at F-distichus_contig102634:872..1183+ (Fucus distichus monoicous)
CTGGAGGGGCAGGTGGTGAACTTGCAGGACAGCCTGCAGATGCAGGAGCA
GGCCAGCAGCGGGAGGGAGGAGATGTACAGGCAGGAGATCTCCTCGCTGA
GGCGGAGGCTGGAGCAAAGTGATGACAGACATGAGGACTTGGCTGAGAGT
GCTGGGCAGGCTACTAAGCCTTTACTGAGACAGATTGAGACCTTGCAGTC
CAGTGTGAGAGAGGTGACCAGTGTGCAGGAGAGGGTGGAGCAGAGCATGT
CCGAGAGGTTGGAGGTGGCCCACAGCCTGGCTCAGGTGCAGGAGAGGGAG
AGAAGTTTGTAGCTGGAGGGGCAGGTGGTGAACTTGCAGGACAGCCTGCA
GATGCAGGAGCAGGCCAGCAGCGGGAGGGAGGAGATGTACAGGCAGGAGA
TCTCCTCGCTGAGGCGGAGGCTGGAGCAAAGTGATGACAGACATGAGGAC
TTGGCTGAGAGTGCTGGGCAGGCTACTAAGCCTTTACTGAGACAGATTGA
GACCTTGCAGTCCAGTGTGAGAGAGGTGACCAGTGTGCAGGAGAGGGTGG
AGCAGAGCATGTCCGAGAGGTTGGAGGTGGCCCACAGCCTGGCTCAGGTG
CAGGAGAGGGAGAGAAGTTTGTAG
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