mRNA_F-distichus_contig102608.226.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102608.226.1
Unique NamemRNA_F-distichus_contig102608.226.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102608.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102608contigF-distichus_contig102608:1416..1836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102608.226.1prot_F-distichus_contig102608.226.1Fucus distichus monoicouspolypeptideF-distichus_contig102608 1470..1781 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.0102684-UTR-F-distichus_contig102608:1415..14691622928943.0102684-UTR-F-distichus_contig102608:1415..1469Fucus distichus monoicousUTRF-distichus_contig102608 1416..1469 +
1690885076.0553637-UTR-F-distichus_contig102608:1415..14691690885076.0553637-UTR-F-distichus_contig102608:1415..1469Fucus distichus monoicousUTRF-distichus_contig102608 1416..1469 +
1622928943.0409667-UTR-F-distichus_contig102608:1781..18361622928943.0409667-UTR-F-distichus_contig102608:1781..1836Fucus distichus monoicousUTRF-distichus_contig102608 1782..1836 +
1690885076.0764506-UTR-F-distichus_contig102608:1781..18361690885076.0764506-UTR-F-distichus_contig102608:1781..1836Fucus distichus monoicousUTRF-distichus_contig102608 1782..1836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.0258574-CDS-F-distichus_contig102608:1469..17811622928943.0258574-CDS-F-distichus_contig102608:1469..1781Fucus distichus monoicousCDSF-distichus_contig102608 1470..1781 +
1690885076.0651338-CDS-F-distichus_contig102608:1469..17811690885076.0651338-CDS-F-distichus_contig102608:1469..1781Fucus distichus monoicousCDSF-distichus_contig102608 1470..1781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102608.226.1

>prot_F-distichus_contig102608.226.1 ID=prot_F-distichus_contig102608.226.1|Name=mRNA_F-distichus_contig102608.226.1|organism=Fucus distichus monoicous|type=polypeptide|length=104bp
MMEQEGQELYDQRRQPCLREEQSPRHTACPLCHQGKSPPWLCSRINPPPS
GAPVVPTPRPPRPSRLTIYRCFYRSPRLSLSRSHRFRRGLEDSIARVSRY
ESP*
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mRNA from alignment at F-distichus_contig102608:1416..1836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102608.226.1 ID=mRNA_F-distichus_contig102608.226.1|Name=mRNA_F-distichus_contig102608.226.1|organism=Fucus distichus monoicous|type=mRNA|length=421bp|location=Sequence derived from alignment at F-distichus_contig102608:1416..1836+ (Fucus distichus monoicous)
CTGGATAAGCCGGATGTTTGATCGCCTTCGCGCCACTGCCGCATAGACCG
TCCGATGATGGAGCAAGAGGGACAGGAGCTCTACGATCAACGGCGACAGC
CTTGTCTGAGGGAGGAGCAATCTCCGAGGCACACTGCTTGTCCCCTTTGT
CATCAAGGAAAGTCGCCTCCATGGTTGTGCTCGAGGATAAACCCACCGCC
ATCAGGAGCTCCGGTAGTACCAACCCCTCGACCGCCTCGACCTTCGCGAC
TGACAATTTACCGCTGTTTTTATCGGTCACCTCGTCTCTCGTTGTCGCGG
TCACACCGATTTCGCCGGGGACTCGAGGATTCCATCGCGAGAGTTTCGCG
ATACGAGTCTCCCTGAGAACCAAGCCCATCGAACGGCGTCTCGCTGAGCG
ACGTAGGACCGGCGCCTCCTT
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Coding sequence (CDS) from alignment at F-distichus_contig102608:1416..1836+

>mRNA_F-distichus_contig102608.226.1 ID=mRNA_F-distichus_contig102608.226.1|Name=mRNA_F-distichus_contig102608.226.1|organism=Fucus distichus monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at F-distichus_contig102608:1416..1836+ (Fucus distichus monoicous)
ATGATGGAGCAAGAGGGACAGGAGCTCTACGATCAACGGCGACAGCCTTG
TCTGAGGGAGGAGCAATCTCCGAGGCACACTGCTTGTCCCCTTTGTCATC
AAGGAAAGTCGCCTCCATGGTTGTGCTCGAGGATAAACCCACCGCCATCA
GGAGCTCCGGTAGTACCAACCCCTCGACCGCCTCGACCTTCGCGACTGAC
AATTTACCGCTGTTTTTATCGGTCACCTCGTCTCTCGTTGTCGCGGTCAC
ACCGATTTCGCCGGGGACTCGAGGATTCCATCGCGAGAGTTTCGCGATAC
GAGTCTCCCTGAATGATGGAGCAAGAGGGACAGGAGCTCTACGATCAACG
GCGACAGCCTTGTCTGAGGGAGGAGCAATCTCCGAGGCACACTGCTTGTC
CCCTTTGTCATCAAGGAAAGTCGCCTCCATGGTTGTGCTCGAGGATAAAC
CCACCGCCATCAGGAGCTCCGGTAGTACCAACCCCTCGACCGCCTCGACC
TTCGCGACTGACAATTTACCGCTGTTTTTATCGGTCACCTCGTCTCTCGT
TGTCGCGGTCACACCGATTTCGCCGGGGACTCGAGGATTCCATCGCGAGA
GTTTCGCGATACGAGTCTCCCTGA
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