mRNA_F-distichus_contig102565.221.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102565.221.1
Unique NamemRNA_F-distichus_contig102565.221.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102565.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102565contigF-distichus_contig102565:836..1157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.5813706-CDS-F-distichus_contig102565:835..11561622928942.5813706-CDS-F-distichus_contig102565:835..1156Fucus distichus monoicousCDSF-distichus_contig102565 836..1156 +
1690885075.9070907-CDS-F-distichus_contig102565:835..11561690885075.9070907-CDS-F-distichus_contig102565:835..1156Fucus distichus monoicousCDSF-distichus_contig102565 836..1156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102565.221.1prot_F-distichus_contig102565.221.1Fucus distichus monoicouspolypeptideF-distichus_contig102565 836..1156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102565.221.1

>prot_F-distichus_contig102565.221.1 ID=prot_F-distichus_contig102565.221.1|Name=mRNA_F-distichus_contig102565.221.1|organism=Fucus distichus monoicous|type=polypeptide|length=107bp
PRYTLLPRKTVRRHFLFCAFVHGHRGWRRRISCRRYGSRFAFPKLPWCSI
AVPAVCLCFSILHTSDRSGRSLYVRTDQYDVDKPQESVQHHRPVRVSSSR
SVQRHLT
back to top

mRNA from alignment at F-distichus_contig102565:836..1157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102565.221.1 ID=mRNA_F-distichus_contig102565.221.1|Name=mRNA_F-distichus_contig102565.221.1|organism=Fucus distichus monoicous|type=mRNA|length=322bp|location=Sequence derived from alignment at F-distichus_contig102565:836..1157+ (Fucus distichus monoicous)
CCACGGTACACTCTTCTTCCACGCAAAACTGTTCGGCGGCATTTCTTGTT
TTGCGCCTTTGTCCACGGCCATCGTGGATGGCGACGGAGAATTAGCTGCC
GAAGGTATGGGAGTCGCTTCGCTTTCCCTAAACTTCCATGGTGCAGTATC
GCGGTACCTGCAGTTTGCTTATGTTTCAGTATACTTCACACGTCGGACAG
ATCGGGTAGGTCCCTATACGTCCGTACAGATCAATATGATGTGGACAAGC
CCCAGGAATCTGTGCAGCACCATCGACCTGTACGTGTTTCCAGCTCGAGA
TCTGTGCAACGCCATTTGACTT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig102565:836..1157+

>mRNA_F-distichus_contig102565.221.1 ID=mRNA_F-distichus_contig102565.221.1|Name=mRNA_F-distichus_contig102565.221.1|organism=Fucus distichus monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at F-distichus_contig102565:836..1157+ (Fucus distichus monoicous)
CCACGGTACACTCTTCTTCCACGCAAAACTGTTCGGCGGCATTTCTTGTT
TTGCGCCTTTGTCCACGGCCATCGTGGATGGCGACGGAGAATTAGCTGCC
GAAGGTATGGGAGTCGCTTCGCTTTCCCTAAACTTCCATGGTGCAGTATC
GCGGTACCTGCAGTTTGCTTATGTTTCAGTATACTTCACACGTCGGACAG
ATCGGGTAGGTCCCTATACGTCCGTACAGATCAATATGATGTGGACAAGC
CCCAGGAATCTGTGCAGCACCATCGACCTGTACGTGTTTCCAGCTCGAGA
TCTGTGCAACGCCATTTGACTCCACGGTACACTCTTCTTCCACGCAAAAC
TGTTCGGCGGCATTTCTTGTTTTGCGCCTTTGTCCACGGCCATCGTGGAT
GGCGACGGAGAATTAGCTGCCGAAGGTATGGGAGTCGCTTCGCTTTCCCT
AAACTTCCATGGTGCAGTATCGCGGTACCTGCAGTTTGCTTATGTTTCAG
TATACTTCACACGTCGGACAGATCGGGTAGGTCCCTATACGTCCGTACAG
ATCAATATGATGTGGACAAGCCCCAGGAATCTGTGCAGCACCATCGACCT
GTACGTGTTTCCAGCTCGAGATCTGTGCAACGCCATTTGACT
back to top