mRNA_F-distichus_contig102533.219.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A0V1PKP7_9BILA (Retrovirus-related Pol polyprotein from transposon 17.6 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1PKP7_9BILA) HSP 1 Score: 63.9 bits (154), Expect = 4.420e-9 Identity = 43/150 (28.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query: 13 RQAPGQPVQSFLATLRSKARQCDMKLVN--NFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQG----QKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
+Q + ++ F+ L+ ++ C+ K V + E ++ FIN +++ E++ LL I+L +AVN AVA +AK + ++ ++ + +S G V +CY CGN+RH R +C A+ C+ CG GHF + C
Sbjct: 94 KQRDSESLEEFVHALQRMSKNCEYKNVTAEQYREEMIRDAFINNMSSNEIRTRLLVLSVISLQEAVNNAVALNSAKENAKLYTKSEPIINSVSATDPGIEMTNTSVATKQECY-FCGNRRHP----RVNCPARNTTCNNCGKVGHFAKVC 238
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A0V1CAT5_TRIBR (Pro-Pol polyprotein n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1CAT5_TRIBR) HSP 1 Score: 63.9 bits (154), Expect = 4.490e-9 Identity = 43/150 (28.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query: 13 RQAPGQPVQSFLATLRSKARQCDMKLVN--NFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQG----QKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
+Q + ++ F+ L+ ++ C+ K V + E ++ FIN +++ E++ LL I+L +AVN AVA +AK + ++ ++ + +S G V +CY CGN+RH R +C A+ C+ CG GHF + C
Sbjct: 94 KQRDSESLEEFVHALQRMSKNCEYKNVTAEQYREEMIRDAFINNMSSNEIRTRLLVLSVISLQEAVNNAVALNSAKENAKLYTKSEPIINSVSATDPGIEMTNTSVATKQECY-FCGNRRHP----RVNCPARNTTCNNCGKVGHFAKVC 238
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: UPI001425577A (uncharacterized protein LOC117106373 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425577A) HSP 1 Score: 61.2 bits (147), Expect = 2.720e-8 Identity = 48/155 (30.97%), Postives = 70/155 (45.16%), Query Frame = 1
Query: 25 GQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETA-------KRSQEVLDTNQQQASGISTYKQGQKKVMVPPD--------CYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
G+P+Q++LA LR A CD N E L + G+ N +Q+ LLAE +TL KAV +AVA + A ++S +TN ++ I K ++ P C C G H + C A + C C KGHF ++C
Sbjct: 100 GEPIQTYLAELRRLAMTCDF---GNTLEDTLRDRLVCGLNNSHIQKRLLAEDKLTLQKAVELAVAMDAAHKDAIELQKSHNPNNTNGGKSDVIHAAKHKTERFSKKPKAKFSQKSTCRNCGGVYPH----RQAPCPAADKSCHHCSRKGHFAKFC 247
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: UPI00178595E7 (uncharacterized protein LOC118756707 n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI00178595E7) HSP 1 Score: 59.7 bits (143), Expect = 9.990e-8 Identity = 42/146 (28.77%), Postives = 71/146 (48.63%), Query Frame = 1
Query: 28 QPVQSFLATLRSKARQCDMKLV--NNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQGQK------KVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCSCGIKGHFREYC 441
QP FL LR + +C+ + ++ +L I GV + +LQ LL + L++ V M E+ ++++L ++Q S +++ +K V C+ C G +SD ++ C A+E +CSCG KGHFR C
Sbjct: 134 QPFNEFLTELRVQLERCEYNCICGASYENRMLRDRIITGVCDRKLQLKLLDRRDENLERVVEMCKTFESVNANKDIL-ASKQSISAVASIASKEKDEVNAINVTNRRFCFNC-GGDWNSD--HKSKCPAREFMCSCGKKGHFRRMC 275
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A8B6BJP5_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BJP5_MYTGA) HSP 1 Score: 57.4 bits (137), Expect = 2.320e-7 Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = 1
Query: 7 RIRQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHF 429
R+RQ P + V F+A LR + CD K + +L + G+ +Q+ LLAE G+TL KA+ +A A E A ++ L + KQ K + +CY C G+ N DC K+ C C KGH
Sbjct: 50 RLRQ-PNESVSQFVAELRQISEHCDYKAT---LDDMLRDRLVCGIKEDRIQRRLLAEPGLTLKKAMEVATAMEMAAKNAHDLQ--------VQEPKQVHKVTIRNEECYRCGGSH------NATDCKWKDAKCYVCDKKGHL 173
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A6J8BT70_MYTCO (CCHC-type domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BT70_MYTCO) HSP 1 Score: 58.2 bits (139), Expect = 3.810e-7 Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = 1
Query: 34 VQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLD------TNQQQASGIS-TYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLC-SCGIKGHFREYC 441
+++F+A LRS C+ N +L + G+ + +Q+ L AE +TLDKA+ +A A ETA+++ + + T Q+Q + +S +Y + DCY C GN +D C K+ C SC KGH + C
Sbjct: 103 LRTFIAALRSLTEHCNYGDTLN---AMLRDRLVVGIKSDRIQRRLFAEPNLTLDKALEIATAMETAEKNAQDIQASGTNATFQKQVNKVSKSYTRNNSGNSKQGDCYRCGGNHLAAD------CRFKDAKCLSCKKKGHITKKC 237
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: UPI001C8FBDF6 (uncharacterized protein LOC122391560 isoform X1 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C8FBDF6) HSP 1 Score: 57.8 bits (138), Expect = 6.330e-7 Identity = 39/147 (26.53%), Postives = 77/147 (52.38%), Query Frame = 1
Query: 4 QRIRQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLC-SCGIKGHFREYC 441
QR+++A G+ FL ++ C+ ++ + L + G+ + + ++LLA++ +TL KA+N+ ARE A+ ++ L ++ A+ +S ++G+ P CG + H+D+ DC A+ + C +CG +GH C
Sbjct: 175 QRVQEA-GESFNDFLMAIKEIHDFCNF--CDHCQDDQLRDKIVTGIRDTIVLEELLADESLTLQKAINICRARENAQCGRDELQSHYLSANRVSAAQRGKH---APVKKCGFCGEEWHADLA---DCQARSSTCQACGRRGHLAVAC 312
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A6P7H8G7_DIAVI (uncharacterized protein LOC114348527 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7H8G7_DIAVI) HSP 1 Score: 56.6 bits (135), Expect = 1.240e-6 Identity = 42/157 (26.75%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 13 RQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQE---------VLDTNQQQASGISTYKQGQK--KVMVPPDCYPC--CGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
+Q PGQP +F+ L+ +A +C ++ + +++ + I G+ N E+++ LL E G+TL+KA+ + E+++ E V++ SG + Y+ G+K V + C CG + H +N +C A +C+ C + HF C
Sbjct: 49 KQDPGQPTSNFITELKKRAGRCQLE---KLQDSLIVTMIICGIKNNEIRERLLQEDGLTLEKAIELCQVIESSRARSEMMRVGAPSNVIEVEAVNKSG-NRYQGGEKLKHQEVSQNIQNCNKCGQRLHR--IN--NCPAFGKVCNFCKLPNHFATVC 197
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: W4LLX0_9BACT (Peptidase A2 domain-containing protein n=1 Tax=Candidatus Entotheonella gemina TaxID=1429439 RepID=W4LLX0_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 1.510e-6 Identity = 47/160 (29.38%), Postives = 69/160 (43.12%), Query Frame = 1
Query: 13 RQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVL----------------DTNQQQASGISTYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
RQ G+ V +F+A LR A C+ V N +L + G++N +Q+ LL E +T +KA+ MA+A ETA++ L +T + G K Q + DC+ C G + S C KE C C KGH + C
Sbjct: 119 RQGEGETVATFVAELRKLAEYCEYGDVLN---DMLRDRVVCGISNKAVQRRLLQESALTFEKALEMALAAETAEKDARRLTDDATEREQVKDTLPSETRVNKVDGPKLNKSPQSQSGTRRDCHRCGGKHQPSR------CAFKEYECHFCKKKGHLAKVC 269
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A6S7J9G1_PARCT (Transposon Ty3-G Gag-Pol poly n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J9G1_PARCT) HSP 1 Score: 56.6 bits (135), Expect = 1.700e-6 Identity = 43/149 (28.86%), Postives = 70/149 (46.98%), Query Frame = 1
Query: 10 IRQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQA----SGISTYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLC-SCGIKGHFREYC 441
++Q Q + F+ L++KA++C+ K ++ ++ + GV+N++LQ+ LL E +TLD+AV + A E ++ D NQ+ + I K K C C K H +R C A +C SCG HF C
Sbjct: 208 VKQQENQRIDDFINYLKTKAQECEFK---ELTQSLIRDRIVCGVSNLKLQERLLRESDLTLDRAVLLCKADEDTRKQ---TDENQKHTVDSDNKIGAVKVNGSKFPKFKSCRYC--GKLH----DRGQCPAYSKVCTSCGKSNHFVAVC 344 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig102533.219.1 >prot_F-distichus_contig102533.219.1 ID=prot_F-distichus_contig102533.219.1|Name=mRNA_F-distichus_contig102533.219.1|organism=Fucus distichus monoicous|type=polypeptide|length=147bp LQRIRQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMback to top mRNA from alignment at F-distichus_contig102533:1249..1716- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig102533.219.1 ID=mRNA_F-distichus_contig102533.219.1|Name=mRNA_F-distichus_contig102533.219.1|organism=Fucus distichus monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at F-distichus_contig102533:1249..1716- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig102533:1249..1716- >mRNA_F-distichus_contig102533.219.1 ID=mRNA_F-distichus_contig102533.219.1|Name=mRNA_F-distichus_contig102533.219.1|organism=Fucus distichus monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at F-distichus_contig102533:1249..1716- (Fucus distichus monoicous)back to top |