mRNA_F-distichus_contig102533.219.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102533.219.1
Unique NamemRNA_F-distichus_contig102533.219.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A0V1PKP7_9BILA (Retrovirus-related Pol polyprotein from transposon 17.6 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1PKP7_9BILA)

HSP 1 Score: 63.9 bits (154), Expect = 4.420e-9
Identity = 43/150 (28.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query:   13 RQAPGQPVQSFLATLRSKARQCDMKLVN--NFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQG----QKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
            +Q   + ++ F+  L+  ++ C+ K V    + E ++   FIN +++ E++  LL    I+L +AVN AVA  +AK + ++   ++   + +S    G       V    +CY  CGN+RH     R +C A+   C+ CG  GHF + C
Sbjct:   94 KQRDSESLEEFVHALQRMSKNCEYKNVTAEQYREEMIRDAFINNMSSNEIRTRLLVLSVISLQEAVNNAVALNSAKENAKLYTKSEPIINSVSATDPGIEMTNTSVATKQECY-FCGNRRHP----RVNCPARNTTCNNCGKVGHFAKVC 238          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A0V1CAT5_TRIBR (Pro-Pol polyprotein n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1CAT5_TRIBR)

HSP 1 Score: 63.9 bits (154), Expect = 4.490e-9
Identity = 43/150 (28.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query:   13 RQAPGQPVQSFLATLRSKARQCDMKLVN--NFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQG----QKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
            +Q   + ++ F+  L+  ++ C+ K V    + E ++   FIN +++ E++  LL    I+L +AVN AVA  +AK + ++   ++   + +S    G       V    +CY  CGN+RH     R +C A+   C+ CG  GHF + C
Sbjct:   94 KQRDSESLEEFVHALQRMSKNCEYKNVTAEQYREEMIRDAFINNMSSNEIRTRLLVLSVISLQEAVNNAVALNSAKENAKLYTKSEPIINSVSATDPGIEMTNTSVATKQECY-FCGNRRHP----RVNCPARNTTCNNCGKVGHFAKVC 238          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: UPI001425577A (uncharacterized protein LOC117106373 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425577A)

HSP 1 Score: 61.2 bits (147), Expect = 2.720e-8
Identity = 48/155 (30.97%), Postives = 70/155 (45.16%), Query Frame = 1
Query:   25 GQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETA-------KRSQEVLDTNQQQASGISTYKQGQKKVMVPPD--------CYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
            G+P+Q++LA LR  A  CD     N  E  L    + G+ N  +Q+ LLAE  +TL KAV +AVA + A       ++S    +TN  ++  I   K   ++    P         C  C G   H     +  C A +  C  C  KGHF ++C
Sbjct:  100 GEPIQTYLAELRRLAMTCDF---GNTLEDTLRDRLVCGLNNSHIQKRLLAEDKLTLQKAVELAVAMDAAHKDAIELQKSHNPNNTNGGKSDVIHAAKHKTERFSKKPKAKFSQKSTCRNCGGVYPH----RQAPCPAADKSCHHCSRKGHFAKFC 247          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: UPI00178595E7 (uncharacterized protein LOC118756707 n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI00178595E7)

HSP 1 Score: 59.7 bits (143), Expect = 9.990e-8
Identity = 42/146 (28.77%), Postives = 71/146 (48.63%), Query Frame = 1
Query:   28 QPVQSFLATLRSKARQCDMKLV--NNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQGQK------KVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCSCGIKGHFREYC 441
            QP   FL  LR +  +C+   +   ++   +L    I GV + +LQ  LL  +   L++ V M    E+   ++++L  ++Q  S +++    +K       V     C+ C G   +SD  ++  C A+E +CSCG KGHFR  C
Sbjct:  134 QPFNEFLTELRVQLERCEYNCICGASYENRMLRDRIITGVCDRKLQLKLLDRRDENLERVVEMCKTFESVNANKDIL-ASKQSISAVASIASKEKDEVNAINVTNRRFCFNC-GGDWNSD--HKSKCPAREFMCSCGKKGHFRRMC 275          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A8B6BJP5_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BJP5_MYTGA)

HSP 1 Score: 57.4 bits (137), Expect = 2.320e-7
Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = 1
Query:    7 RIRQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHF 429
            R+RQ P + V  F+A LR  +  CD K      + +L    + G+    +Q+ LLAE G+TL KA+ +A A E A ++   L         +   KQ  K  +   +CY C G+       N  DC  K+  C  C  KGH 
Sbjct:   50 RLRQ-PNESVSQFVAELRQISEHCDYKAT---LDDMLRDRLVCGIKEDRIQRRLLAEPGLTLKKAMEVATAMEMAAKNAHDLQ--------VQEPKQVHKVTIRNEECYRCGGSH------NATDCKWKDAKCYVCDKKGHL 173          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A6J8BT70_MYTCO (CCHC-type domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BT70_MYTCO)

HSP 1 Score: 58.2 bits (139), Expect = 3.810e-7
Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = 1
Query:   34 VQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLD------TNQQQASGIS-TYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLC-SCGIKGHFREYC 441
            +++F+A LRS    C+     N    +L    + G+ +  +Q+ L AE  +TLDKA+ +A A ETA+++ + +       T Q+Q + +S +Y +         DCY C GN   +D      C  K+  C SC  KGH  + C
Sbjct:  103 LRTFIAALRSLTEHCNYGDTLN---AMLRDRLVVGIKSDRIQRRLFAEPNLTLDKALEIATAMETAEKNAQDIQASGTNATFQKQVNKVSKSYTRNNSGNSKQGDCYRCGGNHLAAD------CRFKDAKCLSCKKKGHITKKC 237          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: UPI001C8FBDF6 (uncharacterized protein LOC122391560 isoform X1 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C8FBDF6)

HSP 1 Score: 57.8 bits (138), Expect = 6.330e-7
Identity = 39/147 (26.53%), Postives = 77/147 (52.38%), Query Frame = 1
Query:    4 QRIRQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLC-SCGIKGHFREYC 441
            QR+++A G+    FL  ++     C+    ++  +  L    + G+ +  + ++LLA++ +TL KA+N+  ARE A+  ++ L ++   A+ +S  ++G+     P      CG + H+D+    DC A+ + C +CG +GH    C
Sbjct:  175 QRVQEA-GESFNDFLMAIKEIHDFCNF--CDHCQDDQLRDKIVTGIRDTIVLEELLADESLTLQKAINICRARENAQCGRDELQSHYLSANRVSAAQRGKH---APVKKCGFCGEEWHADLA---DCQARSSTCQACGRRGHLAVAC 312          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A6P7H8G7_DIAVI (uncharacterized protein LOC114348527 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7H8G7_DIAVI)

HSP 1 Score: 56.6 bits (135), Expect = 1.240e-6
Identity = 42/157 (26.75%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   13 RQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQE---------VLDTNQQQASGISTYKQGQK--KVMVPPDCYPC--CGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
            +Q PGQP  +F+  L+ +A +C ++      + +++ + I G+ N E+++ LL E G+TL+KA+ +    E+++   E         V++      SG + Y+ G+K     V  +   C  CG + H   +N  +C A   +C+ C +  HF   C
Sbjct:   49 KQDPGQPTSNFITELKKRAGRCQLE---KLQDSLIVTMIICGIKNNEIRERLLQEDGLTLEKAIELCQVIESSRARSEMMRVGAPSNVIEVEAVNKSG-NRYQGGEKLKHQEVSQNIQNCNKCGQRLHR--IN--NCPAFGKVCNFCKLPNHFATVC 197          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: W4LLX0_9BACT (Peptidase A2 domain-containing protein n=1 Tax=Candidatus Entotheonella gemina TaxID=1429439 RepID=W4LLX0_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.510e-6
Identity = 47/160 (29.38%), Postives = 69/160 (43.12%), Query Frame = 1
Query:   13 RQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVL----------------DTNQQQASGISTYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCS-CGIKGHFREYC 441
            RQ  G+ V +F+A LR  A  C+   V N    +L    + G++N  +Q+ LL E  +T +KA+ MA+A ETA++    L                +T   +  G    K  Q +     DC+ C G  + S       C  KE  C  C  KGH  + C
Sbjct:  119 RQGEGETVATFVAELRKLAEYCEYGDVLN---DMLRDRVVCGISNKAVQRRLLQESALTFEKALEMALAAETAEKDARRLTDDATEREQVKDTLPSETRVNKVDGPKLNKSPQSQSGTRRDCHRCGGKHQPSR------CAFKEYECHFCKKKGHLAKVC 269          
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Match: A0A6S7J9G1_PARCT (Transposon Ty3-G Gag-Pol poly n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J9G1_PARCT)

HSP 1 Score: 56.6 bits (135), Expect = 1.700e-6
Identity = 43/149 (28.86%), Postives = 70/149 (46.98%), Query Frame = 1
Query:   10 IRQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNMELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQA----SGISTYKQGQKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLC-SCGIKGHFREYC 441
            ++Q   Q +  F+  L++KA++C+ K     ++ ++    + GV+N++LQ+ LL E  +TLD+AV +  A E  ++     D NQ+      + I   K    K      C  C   K H    +R  C A   +C SCG   HF   C
Sbjct:  208 VKQQENQRIDDFINYLKTKAQECEFK---ELTQSLIRDRIVCGVSNLKLQERLLRESDLTLDRAVLLCKADEDTRKQ---TDENQKHTVDSDNKIGAVKVNGSKFPKFKSCRYC--GKLH----DRGQCPAYSKVCTSCGKSNHFVAVC 344          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102533.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A0V1PKP7_9BILA4.420e-928.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1CAT5_TRIBR4.490e-928.67Pro-Pol polyprotein n=1 Tax=Trichinella britovi Ta... [more]
UPI001425577A2.720e-830.97uncharacterized protein LOC117106373 n=1 Tax=Annei... [more]
UPI00178595E79.990e-828.77uncharacterized protein LOC118756707 n=1 Tax=Rhago... [more]
A0A8B6BJP5_MYTGA2.320e-731.69Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
A0A6J8BT70_MYTCO3.810e-730.56CCHC-type domain-containing protein n=1 Tax=Mytilu... [more]
UPI001C8FBDF66.330e-726.53uncharacterized protein LOC122391560 isoform X1 n=... [more]
A0A6P7H8G7_DIAVI1.240e-626.75uncharacterized protein LOC114348527 n=1 Tax=Diabr... [more]
W4LLX0_9BACT1.510e-629.38Peptidase A2 domain-containing protein n=1 Tax=Can... [more]
A0A6S7J9G1_PARCT1.700e-628.86Transposon Ty3-G Gag-Pol poly n=1 Tax=Paramuricea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102533contigF-distichus_contig102533:1249..1716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue7.8e-07
Seed eggNOG ortholog7029.ACYPI084326-PA
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.zinc finger
EggNOG OGs2B477@1,2S0GD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.426677-CDS-F-distichus_contig102533:1248..15991622928942.426677-CDS-F-distichus_contig102533:1248..1599Fucus distichus monoicousCDSF-distichus_contig102533 1249..1599 -
1690885075.8488998-CDS-F-distichus_contig102533:1248..15991690885075.8488998-CDS-F-distichus_contig102533:1248..1599Fucus distichus monoicousCDSF-distichus_contig102533 1249..1599 -
1622928942.441231-CDS-F-distichus_contig102533:1626..17161622928942.441231-CDS-F-distichus_contig102533:1626..1716Fucus distichus monoicousCDSF-distichus_contig102533 1627..1716 -
1690885075.869019-CDS-F-distichus_contig102533:1626..17161690885075.869019-CDS-F-distichus_contig102533:1626..1716Fucus distichus monoicousCDSF-distichus_contig102533 1627..1716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102533.219.1prot_F-distichus_contig102533.219.1Fucus distichus monoicouspolypeptideF-distichus_contig102533 1249..1716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102533.219.1

>prot_F-distichus_contig102533.219.1 ID=prot_F-distichus_contig102533.219.1|Name=mRNA_F-distichus_contig102533.219.1|organism=Fucus distichus monoicous|type=polypeptide|length=147bp
LQRIRQAPGQPVQSFLATLRSKARQCDMKLVNNFSEPILLGLFINGVTNM
ELQQDLLAEQGITLDKAVNMAVARETAKRSQEVLDTNQQQASGISTYKQG
QKKVMVPPDCYPCCGNKRHSDMVNRKDCLAKENLCSCGIKGHFREYC
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mRNA from alignment at F-distichus_contig102533:1249..1716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102533.219.1 ID=mRNA_F-distichus_contig102533.219.1|Name=mRNA_F-distichus_contig102533.219.1|organism=Fucus distichus monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at F-distichus_contig102533:1249..1716- (Fucus distichus monoicous)
CTCCAGAGAATCAGACAGGCTCCTGGCCAGCCAGTACAGAGCTTCCTGGC CACCCTCAGGTCCAAGGCCAGGCAATGTGACATGAAGCTGGTCTGCAGCA AGACTGGATGCGGCTAGGTTAACAACTTCAGCGAGCCCATACTGCTCGGC CTGTTCATCAATGGGGTCACCAACATGGAGCTGCAGCAAGACCTCCTGGC CGAGCAGGGGATCACCCTGGACAAGGCCGTCAACATGGCAGTGGCCCGCG AGACCGCCAAACGCTCGCAGGAGGTGCTCGACACCAACCAGCAGCAGGCG TCCGGCATCTCCACCTACAAGCAGGGCCAGAAGAAGGTCATGGTCCCGCC CGACTGCTACCCCTGTTGTGGCAACAAAAGACACAGTGACATGGTGAACA GAAAAGACTGCCTGGCAAAAGAGAACCTGTGCAGTTGTGGTATAAAGGGA CACTTCAGGGAGTACTGC
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Coding sequence (CDS) from alignment at F-distichus_contig102533:1249..1716-

>mRNA_F-distichus_contig102533.219.1 ID=mRNA_F-distichus_contig102533.219.1|Name=mRNA_F-distichus_contig102533.219.1|organism=Fucus distichus monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at F-distichus_contig102533:1249..1716- (Fucus distichus monoicous)
CTCCAGAGAATCAGACAGGCTCCTGGCCAGCCAGTACAGAGCTTCCTGGC
CACCCTCAGGTCCAAGGCCAGGCAATGTGACATGAAGCTGCTCCAGAGAA
TCAGACAGGCTCCTGGCCAGCCAGTACAGAGCTTCCTGGCCACCCTCAGG
TCCAAGGCCAGGCAATGTGACATGAAGCTGGTTAACAACTTCAGCGAGCC
CATACTGCTCGGCCTGTTCATCAATGGGGTCACCAACATGGAGCTGCAGC
AAGACCTCCTGGCCGAGCAGGGGATCACCCTGGACAAGGCCGTCAACATG
GCAGTGGCCCGCGAGACCGCCAAACGCTCGCAGGAGGTGCTCGACACCAA
CCAGCAGCAGGCGTCCGGCATCTCCACCTACAAGCAGGGCCAGAAGAAGG
TCATGGTCCCGCCCGACTGCTACCCCTGTTGTGGCAACAAAAGACACAGT
GACATGGTGAACAGAAAAGACTGCCTGGCAAAAGAGAACCTGTGCAGTTG
TGGTATAAAGGGACACTTCAGGGAGTACTGCGTTAACAACTTCAGCGAGC
CCATACTGCTCGGCCTGTTCATCAATGGGGTCACCAACATGGAGCTGCAG
CAAGACCTCCTGGCCGAGCAGGGGATCACCCTGGACAAGGCCGTCAACAT
GGCAGTGGCCCGCGAGACCGCCAAACGCTCGCAGGAGGTGCTCGACACCA
ACCAGCAGCAGGCGTCCGGCATCTCCACCTACAAGCAGGGCCAGAAGAAG
GTCATGGTCCCGCCCGACTGCTACCCCTGTTGTGGCAACAAAAGACACAG
TGACATGGTGAACAGAAAAGACTGCCTGGCAAAAGAGAACCTGTGCAGTT
GTGGTATAAAGGGACACTTCAGGGAGTACTGC
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