mRNA_F-distichus_contig102532.218.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102532.218.1
Unique NamemRNA_F-distichus_contig102532.218.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: A0A6H5K128_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K128_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.190e-31
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 VMIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            VMIASTVSSKMLSA A  EGFTFEETLPGFKWM HRGQ+LKA+GKT+LFAYEEAIGFGPGDVVFEK
Sbjct:  455 VMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLKAEGKTILFAYEEAIGFGPGDVVFEK 520
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BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: D7G3G9_ECTSI (Bifunctional Aldehyde Dehydrogenase/Phosphoglucomutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G9_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.200e-31
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 VMIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            VMIASTVSSKMLSA A  EGFTFEETLPGFKWM HRGQ+LKA+GKT+LFAYEEAIGFGPGDVVFEK
Sbjct:  558 VMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLKAEGKTILFAYEEAIGFGPGDVVFEK 623
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BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: UPI001884EF74 (phosphoglucomutase-2-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884EF74)

HSP 1 Score: 90.9 bits (224), Expect = 8.500e-20
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    4 MIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            M+ASTVSSK+L A AD+EGF FEETL GFKWMA++  EL+A GKTVLFA+EEAIGF  G  V +K
Sbjct:  358 MLASTVSSKILRAIADKEGFHFEETLTGFKWMANKAVELEAAGKTVLFAFEEAIGFMCGTAVLDK 422
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BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: UPI000265985D (phosphoglucomutase-2 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI000265985D)

HSP 1 Score: 90.5 bits (223), Expect = 1.150e-19
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 VMIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            VMIASTVSSK+L + A +EGF FEETL GFKWMA+RG EL+ QGK VLFA+EEAIG+  G  V++K
Sbjct:  360 VMIASTVSSKILRSMAKKEGFNFEETLTGFKWMANRGIELEKQGKKVLFAFEEAIGYMCGTAVWDK 425
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BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: A0A813BEV9_9DINO (PGM2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BEV9_9DINO)

HSP 1 Score: 86.3 bits (212), Expect = 3.540e-19
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    4 MIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            M+ASTVSSKM+ A A   GF FEETL GFKWM +R   L+A+GKTVLF++EEAIGF  GD V +K
Sbjct:    1 MLASTVSSKMIGAMARANGFHFEETLTGFKWMGNRAAALQAEGKTVLFSFEEAIGFCLGDTVLDK 65
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BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: A0A6H5J982_9HYME (Uncharacterized protein n=2 Tax=Trichogramma TaxID=7490 RepID=A0A6H5J982_9HYME)

HSP 1 Score: 88.6 bits (218), Expect = 5.460e-19
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    4 MIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            M+ASTVSSK+L++ + +EGF FEETL GFKWM +R  ELK  GKTVLFAYEEAIGF  G  V +K
Sbjct:  338 MLASTVSSKILASMSKKEGFKFEETLTGFKWMGNRASELKKSGKTVLFAYEEAIGFMCGSSVLDK 402
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BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: UPI0006261125 (glucose 1,6-bisphosphate synthase n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI0006261125)

HSP 1 Score: 88.6 bits (218), Expect = 5.500e-19
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    4 MIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            M+ASTVSSK+L + A +EGF+FEETL GFKWM +R  EL AQ KTV+FAYEEAIGF  G  V +K
Sbjct:  366 MLASTVSSKILRSMASKEGFSFEETLTGFKWMGNRATELLAQNKTVIFAYEEAIGFMCGSAVLDK 430
[Close]
BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: UPI0009E3A688 (phosphoglucomutase-2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3A688)

HSP 1 Score: 87.8 bits (216), Expect = 1.020e-18
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    4 MIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            MIASTVSSKML A A  EGF FEETL GFKWM +   +L AQGKTVLF++EEAIGF  G  VF+K
Sbjct:  382 MIASTVSSKMLQAMAREEGFQFEETLTGFKWMGNLASDLMAQGKTVLFSFEEAIGFMFGTNVFDK 446
[Close]
BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: UPI000F5511FE (phosphoglucomutase-2-like isoform X1 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5511FE)

HSP 1 Score: 87.8 bits (216), Expect = 1.030e-18
Identity = 45/65 (69.23%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    4 MIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            MIASTVSSKML A A  EGF FEETL GFKWM +   +L AQGKTVLF +EEAIGF  G  VF+K
Sbjct:  397 MIASTVSSKMLQAMAREEGFLFEETLTGFKWMGNLACDLMAQGKTVLFTFEEAIGFMYGTTVFDK 461
[Close]
BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Match: A0A504Z3Z6_FASGI (Phosphoglucomutase n=3 Tax=Fasciola TaxID=6191 RepID=A0A504Z3Z6_FASGI)

HSP 1 Score: 87.4 bits (215), Expect = 1.400e-18
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    4 MIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAYEEAIGFGPGDVVFEK 198
            M++STVSSK+L   A++EGF FEETL GFKWM +R QEL A+G  +LFA+EEAIGF   DVVF+K
Sbjct:  358 MLSSTVSSKILHTMAEQEGFYFEETLTGFKWMGNRAQELAAEGVHILFAFEEAIGFMCSDVVFDK 422
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102532.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K128_9PHAE5.190e-3189.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3G9_ECTSI5.200e-3189.39Bifunctional Aldehyde Dehydrogenase/Phosphoglucomu... [more]
UPI001884EF748.500e-2069.23phosphoglucomutase-2-like n=1 Tax=Pollicipes polli... [more]
UPI000265985D1.150e-1968.18phosphoglucomutase-2 n=1 Tax=Galendromus occidenta... [more]
A0A813BEV9_9DINO3.540e-1964.62PGM2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A6H5J982_9HYME5.460e-1966.15Uncharacterized protein n=2 Tax=Trichogramma TaxID... [more]
UPI00062611255.500e-1966.15glucose 1,6-bisphosphate synthase n=1 Tax=Athalia ... [more]
UPI0009E3A6881.020e-1869.23phosphoglucomutase-2-like n=1 Tax=Orbicella faveol... [more]
UPI000F5511FE1.030e-1869.23phosphoglucomutase-2-like isoform X1 n=2 Tax=Pocil... [more]
A0A504Z3Z6_FASGI1.400e-1864.62Phosphoglucomutase n=3 Tax=Fasciola TaxID=6191 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102532contigF-distichus_contig102532:53..831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.1e-25
Seed eggNOG ortholog2880.D7G3G9
Preferred nameMSC7
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K10661
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko04141,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map04141
KEGG ModuleM00135
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016620,GO:0016903,GO:0022402,GO:0022414,GO:0031224,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046483,GO:0048285,GO:0051321,GO:0055114,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0140013,GO:1901360,GO:1903046
EggNOG free text desc.aldehyde dehydrogenase (NAD) activity
EggNOG OGsCOG1012@1,COG1109@1,KOG1220@2759,KOG2454@2759
EC1.2.1.3,2.3.2.27
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Exons2
Model size198
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102532.218.1prot_F-distichus_contig102532.218.1Fucus distichus monoicouspolypeptideF-distichus_contig102532 53..828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.3616383-CDS-F-distichus_contig102532:52..1271622928942.3616383-CDS-F-distichus_contig102532:52..127Fucus distichus monoicousCDSF-distichus_contig102532 53..127 -
1690885075.8127975-CDS-F-distichus_contig102532:52..1271690885075.8127975-CDS-F-distichus_contig102532:52..127Fucus distichus monoicousCDSF-distichus_contig102532 53..127 -
1622928942.373847-CDS-F-distichus_contig102532:708..8281622928942.373847-CDS-F-distichus_contig102532:708..828Fucus distichus monoicousCDSF-distichus_contig102532 709..828 -
1690885075.8267293-CDS-F-distichus_contig102532:708..8281690885075.8267293-CDS-F-distichus_contig102532:708..828Fucus distichus monoicousCDSF-distichus_contig102532 709..828 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.3844519-UTR-F-distichus_contig102532:828..8311622928942.3844519-UTR-F-distichus_contig102532:828..831Fucus distichus monoicousUTRF-distichus_contig102532 829..831 -
1690885075.8375468-UTR-F-distichus_contig102532:828..8311690885075.8375468-UTR-F-distichus_contig102532:828..831Fucus distichus monoicousUTRF-distichus_contig102532 829..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102532.218.1

>prot_F-distichus_contig102532.218.1 ID=prot_F-distichus_contig102532.218.1|Name=mRNA_F-distichus_contig102532.218.1|organism=Fucus distichus monoicous|type=polypeptide|length=65bp
MIASTVSSKMLSAAADREGFTFEETLPGFKWMAHRGQELKAQGKTVLFAY
EEAIGFGPGDVVFEK
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mRNA from alignment at F-distichus_contig102532:53..831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102532.218.1 ID=mRNA_F-distichus_contig102532.218.1|Name=mRNA_F-distichus_contig102532.218.1|organism=Fucus distichus monoicous|type=mRNA|length=779bp|location=Sequence derived from alignment at F-distichus_contig102532:53..831- (Fucus distichus monoicous)
GTGATGATCGCCAGCACTGTGTCGTCCAAGATGCTCTCGGCAGCTGCGGA
CCGAGAAGGTTTCACCTTCGAGGAGACGCTGCCGGGATTCAAGTGGATGG
CCCACCGAGGGCAGGAGCTCAAGGTAGTTTGGTCCTCCTCGCTGGGTAGA
TTGTGTTCTGTAACGTTTGCTCATCGTAGTGTTGACATTTGTTGTCGTTC
CTATCATGTAGACTATACTATAATAATAAATAAAGCTATTTTGTTACTGT
ACCTGTTTGTATCGTTGGGTTTTACGTTTTACCGGGGCCGTTATTTGGCT
GAAAATTACTGAAATCCGTATTTTCAGCGAAGCAAAATTAAATTAATAGT
GGACCAGGGCAGCTTCACAAACGTCATCCGCCGCCATGCTCCGTACATCC
CACCCCTCCCGTACAAAGAAATCTAACGTCGAATTCATTAATAAACTAAT
AAATTACTTGATAAATGTATTTTCCTTTCCAGTTGATGTATTAACCCTAA
ACTAAAAGTTCAGTTTTTTTTTTTGTCAAACTAGTTTTCCGGGCGCGTTC
TTTGACCCAACTAAAATAATTTAAATATACCGTATGAATAGAAGAAAGAC
ATCGCCATGTGCGCTAATCTTCCGAGCACCTTTTTTTGCTTTTTATTCTA
CACCAACCAATAATGAATTAACATGAAATGGAAAATTGATTTTTCGCCGT
GCAGGCTCAGGGCAAAACGGTCCTTTTCGCGTACGAGGAAGCCATCGGCT
TTGGCCCCGGAGATGTCGTCTTCGAGAAG
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Coding sequence (CDS) from alignment at F-distichus_contig102532:53..831-

>mRNA_F-distichus_contig102532.218.1 ID=mRNA_F-distichus_contig102532.218.1|Name=mRNA_F-distichus_contig102532.218.1|organism=Fucus distichus monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at F-distichus_contig102532:53..831- (Fucus distichus monoicous)
ATGATCGCCAGCACTGTGTCGTCCAAGATGCTCTCGGCAGCTGCGGACCG
AGAAGGTTTCACCTTCGAGGAGACGCTGCCGGGATTCAAGTGGATGGCCC
ACCGAGGGCAGGAGCTCAAGATGATCGCCAGCACTGTGTCGTCCAAGATG
CTCTCGGCAGCTGCGGACCGAGAAGGTTTCACCTTCGAGGAGACGCTGCC
GGGATTCAAGTGGATGGCCCACCGAGGGCAGGAGCTCAAGGCTCAGGGCA
AAACGGTCCTTTTCGCGTACGAGGAAGCCATCGGCTTTGGCCCCGGAGAT
GTCGTCTTCGAGAAGGCTCAGGGCAAAACGGTCCTTTTCGCGTACGAGGA
AGCCATCGGCTTTGGCCCCGGAGATGTCGTCTTCGAGAAG
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