mRNA_F-distichus_contig102522.217.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102522.217.1
Unique NamemRNA_F-distichus_contig102522.217.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102522.217.1 vs. uniprot
Match: D7FN51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN51_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 5.960e-24
Identity = 87/201 (43.28%), Postives = 104/201 (51.74%), Query Frame = 1 
Query:    1 QVLSVNQTNGDVIRVSSGEPVRCCTTCTRILDYQLSQALKRKGWGARSVAAAAATGSER------GTSRVLPSTIGGGYAASLPRYSDH-TESFDGGGFAPPTVHNRDQGGDNNSRARVDL-----------------GSRRQSEDH-RRV--GDADPLARVDQRQPQPEYSRPPPRF-DPPPQAEGVPSWLGKGSSGSRK 519
            +VLSVNQT G VIR+SSGEPVRCCT CTR+LD QL+ AL+RKGWGAR    AA     +       +S    +  G GYAA+LP  S   TE +DGGGF PP   +R    +                          G    SE   RR+  G  DPLA V +  P P    PP R+ +P P A  VPSWLGK S GS +
Sbjct:  305 KVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAINAIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSRPNAEEXXXXXXXXXXXXXXXXXXXXYHGGGDGRGYDSESPVRRMKHGVEDPLASVQEHSPPP----PPRRWQEPQPTAGEVPSWLGKSSLGSSR 501
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102522.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN51_ECTSI5.960e-2443.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102522contigF-distichus_contig102522:289..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog2880.D7FN51
KEGG koko:K04679,ko:K18052,ko:K19662
KEGG Pathwayko01521,ko04010,ko04012,ko04014,ko04015,ko04020,ko04062,ko04064,ko04066,ko04070,ko04071,ko04140,ko04144,ko04150,ko04270,ko04310,ko04350,ko04370,ko04510,ko04540,ko04650,ko04658,ko04659,ko04660,ko04662,ko04666,ko04670,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04750,ko04911,ko04912,ko04916,ko04918,ko04919,ko04920,ko04921,ko04925,ko04931,ko04933,ko04960,ko04961,ko04970,ko04971,ko04972,ko04973,ko05031,ko05032,ko05140,ko05143,ko05146,ko05161,ko05162,ko05200,ko05205,ko05206,ko05214,ko05223,ko05225,ko05231,map01521,map04010,map04012,map04014,map04015,map04020,map04062,map04064,map04066,map04070,map04071,map04140,map04144,map04150,map04270,map04310,map04350,map04370,map04510,map04540,map04650,map04658,map04659,map04660,map04662,map04666,map04670,map04713,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04750,map04911,map04912,map04916,map04918,map04919,map04920,map04921,map04925,map04931,map04933,map04960,map04961,map04970,map04971,map04972,map04973,map05031,map05032,map05140,map05143,map05146,map05161,map05162,map05200,map05205,map05206,map05214,map05223,map05225,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.1-phosphatidylinositol binding
EggNOG OGsKOG0694@1,KOG0694@2759,KOG1841@1,KOG1841@2759
EC2.7.11.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009
Exons2
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.3181112-CDS-F-distichus_contig102522:288..4081622928942.3181112-CDS-F-distichus_contig102522:288..408Fucus distichus monoicousCDSF-distichus_contig102522 289..408 +
1690885075.786779-CDS-F-distichus_contig102522:288..4081690885075.786779-CDS-F-distichus_contig102522:288..408Fucus distichus monoicousCDSF-distichus_contig102522 289..408 +
1622928942.3291743-CDS-F-distichus_contig102522:684..10831622928942.3291743-CDS-F-distichus_contig102522:684..1083Fucus distichus monoicousCDSF-distichus_contig102522 685..1083 +
1690885075.8026853-CDS-F-distichus_contig102522:684..10831690885075.8026853-CDS-F-distichus_contig102522:684..1083Fucus distichus monoicousCDSF-distichus_contig102522 685..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102522.217.1prot_F-distichus_contig102522.217.1Fucus distichus monoicouspolypeptideF-distichus_contig102522 289..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102522.217.1

>prot_F-distichus_contig102522.217.1 ID=prot_F-distichus_contig102522.217.1|Name=mRNA_F-distichus_contig102522.217.1|organism=Fucus distichus monoicous|type=polypeptide|length=173bp
QVLSVNQTNGDVIRVSSGEPVRCCTTCTRILDYQLSQALKRKGWGARSVA
AAAATGSERGTSRVLPSTIGGGYAASLPRYSDHTESFDGGGFAPPTVHNR
DQGGDNNSRARVDLGSRRQSEDHRRVGDADPLARVDQRQPQPEYSRPPPR
FDPPPQAEGVPSWLGKGSSGSRK
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mRNA from alignment at F-distichus_contig102522:289..1083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102522.217.1 ID=mRNA_F-distichus_contig102522.217.1|Name=mRNA_F-distichus_contig102522.217.1|organism=Fucus distichus monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at F-distichus_contig102522:289..1083+ (Fucus distichus monoicous)
CAGGTCCTGTCAGTCAATCAAACGAACGGAGACGTGATTAGAGTCTCTTC
CGGGGAACCGGTCCGCTGCTGCACCACCTGTACGCGTATCCTCGACTACC
AACTGTCGCAGGCACTGAAGGTAAGGGGGGCGTCGCCGATCTGTCGTCTC
CTAGATCCGCTGTGCTCTGTACGAGTTCGTTGTGTCCATGACGTATACAA
GTGCTATTAATAGTTGTTTGCTCGCCGTTTTCGCCAATTCTTGAGCTACG
CTGTCCTGCCGTAGTTCGGAGGAAGTAATGCAGCAGCAGCCCTATAGTTG
TTGGCCTGGTAGCCCCCTGTCCGTTTATCGAGCGTCTCGTACTGTGCCTG
CGATGACTCGCGCCGTTCCTTCACGAATGTCTCGTTCTCCTTCTAGCGGA
AGGGATGGGGAGCAAGATCTGTCGCTGCTGCCGCTGCTACCGGCAGCGAA
CGGGGGACATCCCGGGTGCTGCCATCGACTATTGGGGGCGGTTACGCGGC
TTCGCTTCCCAGGTACTCTGATCACACTGAAAGTTTCGACGGCGGTGGCT
TTGCTCCCCCGACGGTGCACAACAGAGACCAGGGTGGCGATAACAACTCC
CGAGCAAGGGTTGATCTGGGGAGCAGGAGGCAGTCTGAGGACCACCGCCG
CGTGGGCGACGCTGACCCGCTGGCGAGAGTCGACCAGCGGCAGCCGCAGC
CGGAGTACTCCCGACCCCCGCCGCGTTTCGACCCGCCTCCTCAGGCGGAG
GGAGTGCCATCGTGGTTGGGTAAAGGTTCGTCGGGGTCACGGAAG
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Coding sequence (CDS) from alignment at F-distichus_contig102522:289..1083+

>mRNA_F-distichus_contig102522.217.1 ID=mRNA_F-distichus_contig102522.217.1|Name=mRNA_F-distichus_contig102522.217.1|organism=Fucus distichus monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at F-distichus_contig102522:289..1083+ (Fucus distichus monoicous)
CAGGTCCTGTCAGTCAATCAAACGAACGGAGACGTGATTAGAGTCTCTTC
CGGGGAACCGGTCCGCTGCTGCACCACCTGTACGCGTATCCTCGACTACC
AACTGTCGCAGGCACTGAAGCAGGTCCTGTCAGTCAATCAAACGAACGGA
GACGTGATTAGAGTCTCTTCCGGGGAACCGGTCCGCTGCTGCACCACCTG
TACGCGTATCCTCGACTACCAACTGTCGCAGGCACTGAAGCGGAAGGGAT
GGGGAGCAAGATCTGTCGCTGCTGCCGCTGCTACCGGCAGCGAACGGGGG
ACATCCCGGGTGCTGCCATCGACTATTGGGGGCGGTTACGCGGCTTCGCT
TCCCAGGTACTCTGATCACACTGAAAGTTTCGACGGCGGTGGCTTTGCTC
CCCCGACGGTGCACAACAGAGACCAGGGTGGCGATAACAACTCCCGAGCA
AGGGTTGATCTGGGGAGCAGGAGGCAGTCTGAGGACCACCGCCGCGTGGG
CGACGCTGACCCGCTGGCGAGAGTCGACCAGCGGCAGCCGCAGCCGGAGT
ACTCCCGACCCCCGCCGCGTTTCGACCCGCCTCCTCAGGCGGAGGGAGTG
CCATCGTGGTTGGGTAAAGGTTCGTCGGGGTCACGGAAGCGGAAGGGATG
GGGAGCAAGATCTGTCGCTGCTGCCGCTGCTACCGGCAGCGAACGGGGGA
CATCCCGGGTGCTGCCATCGACTATTGGGGGCGGTTACGCGGCTTCGCTT
CCCAGGTACTCTGATCACACTGAAAGTTTCGACGGCGGTGGCTTTGCTCC
CCCGACGGTGCACAACAGAGACCAGGGTGGCGATAACAACTCCCGAGCAA
GGGTTGATCTGGGGAGCAGGAGGCAGTCTGAGGACCACCGCCGCGTGGGC
GACGCTGACCCGCTGGCGAGAGTCGACCAGCGGCAGCCGCAGCCGGAGTA
CTCCCGACCCCCGCCGCGTTTCGACCCGCCTCCTCAGGCGGAGGGAGTGC
CATCGTGGTTGGGTAAAGGTTCGTCGGGGTCACGGAAG
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