mRNA_F-distichus_contig1025.215.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1025.215.1
Unique NamemRNA_F-distichus_contig1025.215.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1025.215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1025contigF-distichus_contig1025:17320..17881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1025.215.1prot_F-distichus_contig1025.215.1Fucus distichus monoicouspolypeptideF-distichus_contig1025 17409..17729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.0443127-UTR-F-distichus_contig1025:17319..174081622928942.0443127-UTR-F-distichus_contig1025:17319..17408Fucus distichus monoicousUTRF-distichus_contig1025 17320..17408 +
1690885075.5686865-UTR-F-distichus_contig1025:17319..174081690885075.5686865-UTR-F-distichus_contig1025:17319..17408Fucus distichus monoicousUTRF-distichus_contig1025 17320..17408 +
1622928942.080158-UTR-F-distichus_contig1025:17729..178811622928942.080158-UTR-F-distichus_contig1025:17729..17881Fucus distichus monoicousUTRF-distichus_contig1025 17730..17881 +
1690885075.5910869-UTR-F-distichus_contig1025:17729..178811690885075.5910869-UTR-F-distichus_contig1025:17729..17881Fucus distichus monoicousUTRF-distichus_contig1025 17730..17881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.0623112-CDS-F-distichus_contig1025:17408..177291622928942.0623112-CDS-F-distichus_contig1025:17408..17729Fucus distichus monoicousCDSF-distichus_contig1025 17409..17729 +
1690885075.5806003-CDS-F-distichus_contig1025:17408..177291690885075.5806003-CDS-F-distichus_contig1025:17408..17729Fucus distichus monoicousCDSF-distichus_contig1025 17409..17729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1025.215.1

>prot_F-distichus_contig1025.215.1 ID=prot_F-distichus_contig1025.215.1|Name=mRNA_F-distichus_contig1025.215.1|organism=Fucus distichus monoicous|type=polypeptide|length=107bp
MDPAFGARVWLAPPPQDSMLYRGQRWVALGRAARLSWACEATTQREHEEG
RMTKRRRTRKATMLSVRRSRGRSTLAIRGAAVHERVQAGDQSKMVTFLLP
RRTYIS*
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mRNA from alignment at F-distichus_contig1025:17320..17881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1025.215.1 ID=mRNA_F-distichus_contig1025.215.1|Name=mRNA_F-distichus_contig1025.215.1|organism=Fucus distichus monoicous|type=mRNA|length=562bp|location=Sequence derived from alignment at F-distichus_contig1025:17320..17881+ (Fucus distichus monoicous)
TCGGAACGTGGATCTGGTATTTTCGGAACTTGGATCCAACGATCGTAGCA
TGGTTGCAGCGGTCGCGACACAGATTTGGCGCTCGGAACATGGATCCGGC
GTTCGGAGCACGAGTTTGGCTTGCGCCTCCTCCCCAAGATTCCATGTTGT
ACCGCGGACAGAGGTGGGTGGCGCTGGGGCGAGCCGCTCGGCTCTCGTGG
GCTTGCGAAGCAACCACCCAGCGGGAACACGAGGAGGGAAGAATGACCAA
AAGGCGTCGGACGAGAAAGGCGACAATGCTGTCAGTCAGACGGTCCCGAG
GGAGGTCGACGCTGGCGATCAGAGGAGCCGCCGTACATGAAAGGGTACAA
GCTGGCGATCAGAGCAAAATGGTGACCTTTCTCCTACCAAGGCGAACATA
TATTTCTTGACGAGGACTAGAGCTTGGCCCTGACCATAGATATCTACCCG
ATATTCTTCTGTATACGACGACGAAAATGTCGCCATCCAACGGGGTTCGC
AACAGCAGGTTACCCCGCCAGCGGAATCTGCCGTCGCAAGGATTAGAACC
CCACAGCGGTGG
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Coding sequence (CDS) from alignment at F-distichus_contig1025:17320..17881+

>mRNA_F-distichus_contig1025.215.1 ID=mRNA_F-distichus_contig1025.215.1|Name=mRNA_F-distichus_contig1025.215.1|organism=Fucus distichus monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at F-distichus_contig1025:17320..17881+ (Fucus distichus monoicous)
ATGGATCCGGCGTTCGGAGCACGAGTTTGGCTTGCGCCTCCTCCCCAAGA
TTCCATGTTGTACCGCGGACAGAGGTGGGTGGCGCTGGGGCGAGCCGCTC
GGCTCTCGTGGGCTTGCGAAGCAACCACCCAGCGGGAACACGAGGAGGGA
AGAATGACCAAAAGGCGTCGGACGAGAAAGGCGACAATGCTGTCAGTCAG
ACGGTCCCGAGGGAGGTCGACGCTGGCGATCAGAGGAGCCGCCGTACATG
AAAGGGTACAAGCTGGCGATCAGAGCAAAATGGTGACCTTTCTCCTACCA
AGGCGAACATATATTTCTTGAATGGATCCGGCGTTCGGAGCACGAGTTTG
GCTTGCGCCTCCTCCCCAAGATTCCATGTTGTACCGCGGACAGAGGTGGG
TGGCGCTGGGGCGAGCCGCTCGGCTCTCGTGGGCTTGCGAAGCAACCACC
CAGCGGGAACACGAGGAGGGAAGAATGACCAAAAGGCGTCGGACGAGAAA
GGCGACAATGCTGTCAGTCAGACGGTCCCGAGGGAGGTCGACGCTGGCGA
TCAGAGGAGCCGCCGTACATGAAAGGGTACAAGCTGGCGATCAGAGCAAA
ATGGTGACCTTTCTCCTACCAAGGCGAACATATATTTCTTGA
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