mRNA_F-distichus_contig102499.212.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102499.212.1
Unique NamemRNA_F-distichus_contig102499.212.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: D8LMR0_ECTSI (MOSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR0_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.960e-42
Identity = 70/100 (70.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEVLRVA 300
            +IVVRGWG FAED+WTKI+ G I MR PKPCSRC +P  NQSTLE R EPR+TL TFR GS V +WNE W+ DVFFGMNV HE  GVLRVG+ V+VLR A
Sbjct:  250 NIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPRQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESTGVLRVGNDVDVLRAA 349          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: A0A835Z5C1_9STRA (MOSC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5C1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.300e-23
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQST-LERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEK-KGVLRVGDVVEVLRV 297
            ++VV G GA+AED WTK+  G +VMR+ KPC RC VP+ +QST  +  AEP  TL  FR G+ +   +E  A+ VFFG NV HE  +G LRVGD VEVLRV
Sbjct:  239 NVVVEGMGAWAEDAWTKVAVGDVVMRVVKPCDRCQVPTIDQSTGTKTGAEPTATLRAFRTGAHLGMADEKVASAVFFGQNVLHEGGRGALRVGDRVEVLRV 339          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: A0A849RXJ1_9GAMM (MOSC domain-containing protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A849RXJ1_9GAMM)

HSP 1 Score: 88.2 bits (217), Expect = 2.310e-19
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEVL 291
            ++VV G  A+AED+W KI+ GA+  RLPKPCSRC +P+ + ST     EP  TL+  R           W N+V+FG N  H + GVL VGD V++L
Sbjct:  135 NLVVSGCPAYAEDSWRKIRIGALDFRLPKPCSRCAIPTIDPSTALSGKEPLSTLNRTR----------KWQNNVYFGQNALHAQTGVLTVGDAVDIL 221          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: A0A7C2NJ74_9BACT (MOSC domain-containing protein n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C2NJ74_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 8.180e-19
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   13 RGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEVL 291
            R W    EDNW + K   IV +  KPC+RCV+ + NQ T ER AEP +TLST+R             N V FGMN+ HE KG + +GD++E+L
Sbjct:   36 RRWMLVDEDNWKQFKINEIVFKPVKPCARCVITTVNQETAERGAEPLKTLSTYRRIDN---------NKVIFGMNLLHEGKGTISIGDMLEIL 119          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: UPI001FDAB3EE (MOSC domain-containing protein n=1 Tax=methane-oxidizing endosymbiont of Gigantopelta aegis TaxID=2794938 RepID=UPI001FDAB3EE)

HSP 1 Score: 87.0 bits (214), Expect = 1.620e-18
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEVLR 294
            ++V+ G  A+AED+W KI+ G I  RLPKPCSRC VP+ + +T ER +EP +TL   R           W   V+FG N  H+K G L VG  V+V++
Sbjct:  189 NLVISGCSAYAEDSWRKIQIGDISFRLPKPCSRCAVPTIDPATAERSSEPMQTLQKTR----------KWQKHVYFGQNALHDKSGRLTVGMPVDVIK 276          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: A0A8J7AVF7_9CYAN (MOSC domain-containing protein n=1 Tax=Romeria aff. gracilis LEGE 07310 TaxID=915328 RepID=A0A8J7AVF7_9CYAN)

HSP 1 Score: 84.7 bits (208), Expect = 9.780e-18
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEVL 291
            ++V+RG  A AED W +I+ G IV  + KPCSRC +P+ +QST ER  EP +TLST+R           W + ++FG N+     G L VGD VEVL
Sbjct:  182 NLVIRGCEALAEDTWKQIRIGDIVFDVAKPCSRCSIPTVDQSTGERGKEPMQTLSTYRR----------WDSAIWFGQNLIQHGSGTLAVGDPVEVL 268          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: UPI00189422B9 (MOSC domain-containing protein n=1 Tax=Methylobacter sp. BlB1 TaxID=2785914 RepID=UPI00189422B9)

HSP 1 Score: 84.7 bits (208), Expect = 1.020e-17
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEV 288
            ++V+ G  A+AED+W +I+ GAI  RLPKPCSRC VP+ +  T +   EP  TL+  R           W N V+FG N  H++ G L VGD+V+V
Sbjct:  179 NLVIAGCPAYAEDSWREIRIGAIDFRLPKPCSRCSVPTIDPETAQTGKEPLITLNRVR----------KWQNKVYFGQNALHDQCGALTVGDIVQV 264          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: UPI00036629E5 (MOSC domain-containing protein n=1 Tax=Methylosarcina fibrata TaxID=105972 RepID=UPI00036629E5)

HSP 1 Score: 84.3 bits (207), Expect = 1.430e-17
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEV 288
            ++VV G  A+AED W +I  GAI  RLPKPCSRCVVP+ +Q T     EP  TL+  R           W N V+FG N  H++ G LR+GD V +
Sbjct:  179 NLVVSGCAAYAEDAWREIGIGAIGFRLPKPCSRCVVPTIDQETGAMGKEPLATLNRTR----------KWQNKVYFGQNALHDRCGELRIGDEVRI 264          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: A0A7Y4RSC5_9GAMM (MOSC domain-containing protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A7Y4RSC5_9GAMM)

HSP 1 Score: 84.0 bits (206), Expect = 2.110e-17
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEV 288
            ++++ G  A+AED+W +I  GAI  RLPKPCSRC+VP+ +  T E   EP  TL+  R           W N V+FG N  H++ G+L VG  V V
Sbjct:  178 NLIISGCPAYAEDSWREISIGAIDFRLPKPCSRCIVPTIDPDTAETGKEPLATLNKLR----------KWQNKVYFGQNALHDQCGILTVGATVRV 263          
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Match: A0A3M8VA98_9ACTN (MOSC domain-containing protein n=5 Tax=Streptomyces TaxID=1883 RepID=A0A3M8VA98_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 2.170e-17
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEPRRTLSTFR-AGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEVL 291
            ++V+ G   +AED+W +I+ G +V R+PKPCSRCV+ +T+QST ER  EP RTL+  R AG +++           FG N+  E  G LR+GD VE+L
Sbjct:  193 NVVIDGTAPWAEDDWQRIRIGEVVFRVPKPCSRCVITTTDQSTGERGKEPLRTLARHRRAGDRLL-----------FGQNMVPEGTGTLRLGDPVEIL 279          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102499.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR0_ECTSI1.960e-4270.00MOSC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5C1_9STRA1.300e-2354.46MOSC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A849RXJ1_9GAMM2.310e-1945.36MOSC domain-containing protein n=1 Tax=Methylococc... [more]
A0A7C2NJ74_9BACT8.180e-1945.16MOSC domain-containing protein n=1 Tax=Ignavibacte... [more]
UPI001FDAB3EE1.620e-1843.88MOSC domain-containing protein n=1 Tax=methane-oxi... [more]
A0A8J7AVF7_9CYAN9.780e-1845.36MOSC domain-containing protein n=1 Tax=Romeria aff... [more]
UPI00189422B91.020e-1743.75MOSC domain-containing protein n=1 Tax=Methylobact... [more]
UPI00036629E51.430e-1745.83MOSC domain-containing protein n=1 Tax=Methylosarc... [more]
A0A7Y4RSC5_9GAMM2.110e-1742.71MOSC domain-containing protein n=1 Tax=Methylococc... [more]
A0A3M8VA98_9ACTN2.170e-1744.90MOSC domain-containing protein n=5 Tax=Streptomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102499contigF-distichus_contig102499:208..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2.3e-34
Seed eggNOG ortholog2880.D8LMR0
KEGG koko:K07140,ko:K18467
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MOSC domain-containing protein
EggNOG OGsCOG3217@1,KOG2362@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.6469555-CDS-F-distichus_contig102499:207..3801622928941.6469555-CDS-F-distichus_contig102499:207..380Fucus distichus monoicousCDSF-distichus_contig102499 208..380 +
1690885075.4013546-CDS-F-distichus_contig102499:207..3801690885075.4013546-CDS-F-distichus_contig102499:207..380Fucus distichus monoicousCDSF-distichus_contig102499 208..380 +
1622928941.6631181-CDS-F-distichus_contig102499:646..7731622928941.6631181-CDS-F-distichus_contig102499:646..773Fucus distichus monoicousCDSF-distichus_contig102499 647..773 +
1690885075.4163795-CDS-F-distichus_contig102499:646..7731690885075.4163795-CDS-F-distichus_contig102499:646..773Fucus distichus monoicousCDSF-distichus_contig102499 647..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102499.212.1prot_F-distichus_contig102499.212.1Fucus distichus monoicouspolypeptideF-distichus_contig102499 208..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102499.212.1

>prot_F-distichus_contig102499.212.1 ID=prot_F-distichus_contig102499.212.1|Name=mRNA_F-distichus_contig102499.212.1|organism=Fucus distichus monoicous|type=polypeptide|length=100bp
SIVVRGWGAFAEDNWTKIKTGAIVMRLPKPCSRCVVPSTNQSTLERRAEP
RRTLSTFRAGSQVVQWNESWANDVFFGMNVQHEKKGVLRVGDVVEVLRVA
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mRNA from alignment at F-distichus_contig102499:208..773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102499.212.1 ID=mRNA_F-distichus_contig102499.212.1|Name=mRNA_F-distichus_contig102499.212.1|organism=Fucus distichus monoicous|type=mRNA|length=566bp|location=Sequence derived from alignment at F-distichus_contig102499:208..773+ (Fucus distichus monoicous)
AGCATCGTGGTGCGCGGCTGGGGTGCATTCGCTGAAGACAACTGGACCAA GATCAAGACTGGCGCGATAGTCATGCGCCTACCCAAGCCATGCAGTCGCT GCGTCGTCCCGAGCACTAACCAGAGTACGCTGGAGCGGAGAGCTGAGCCG CGTAGGACGCTAAGCACTTTCCGGTGAGCCCTTGACGCGTCAAGTGGTGT CCCTGCCCTCTTGCGGTGACTTAGATCTACACTCGTGGCGTCGATCGACT TTGATCATCTCGACTGGAGGTGGCTCTTTTTACTGTACACACTCCGCCCA GATGGCGGCTCCCTTCAACCGCCGTGTAGACACGAGACTTGAGGTATGGC CATCCATACAAATGTATATATAAATATATAGACTATATATATTCTCGATA CGGTGTGCATGCACGTATGTTCCGAATTCTCCGCACCAGTGCGGGCTCTC AGGTGGTCCAGTGGAACGAGTCGTGGGCGAATGACGTGTTCTTCGGCATG AATGTTCAGCATGAGAAGAAAGGGGTTCTCCGGGTTGGCGACGTGGTGGA GGTGTTGAGGGTGGCC
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Coding sequence (CDS) from alignment at F-distichus_contig102499:208..773+

>mRNA_F-distichus_contig102499.212.1 ID=mRNA_F-distichus_contig102499.212.1|Name=mRNA_F-distichus_contig102499.212.1|organism=Fucus distichus monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at F-distichus_contig102499:208..773+ (Fucus distichus monoicous)
AGCATCGTGGTGCGCGGCTGGGGTGCATTCGCTGAAGACAACTGGACCAA
GATCAAGACTGGCGCGATAGTCATGCGCCTACCCAAGCCATGCAGTCGCT
GCGTCGTCCCGAGCACTAACCAGAGTACGCTGGAGCGGAGAGCTGAGCCG
CGTAGGACGCTAAGCACTTTCCGAGCATCGTGGTGCGCGGCTGGGGTGCA
TTCGCTGAAGACAACTGGACCAAGATCAAGACTGGCGCGATAGTCATGCG
CCTACCCAAGCCATGCAGTCGCTGCGTCGTCCCGAGCACTAACCAGAGTA
CGCTGGAGCGGAGAGCTGAGCCGCGTAGGACGCTAAGCACTTTCCGTGCG
GGCTCTCAGGTGGTCCAGTGGAACGAGTCGTGGGCGAATGACGTGTTCTT
CGGCATGAATGTTCAGCATGAGAAGAAAGGGGTTCTCCGGGTTGGCGACG
TGGTGGAGGTGTTGAGGGTGGCCTGCGGGCTCTCAGGTGGTCCAGTGGAA
CGAGTCGTGGGCGAATGACGTGTTCTTCGGCATGAATGTTCAGCATGAGA
AGAAAGGGGTTCTCCGGGTTGGCGACGTGGTGGAGGTGTTGAGGGTGGCC
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