mRNA_F-distichus_contig10243.206.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10243.206.1
Unique NamemRNA_F-distichus_contig10243.206.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 3.820e-40
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 SKMQGVMSAELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            SKMQGVMS+ELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADEL+ QQGMAHLVEHVAYMGSRKR
Sbjct:  174 SKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELESQQGMAHLVEHVAYMGSRKR 248
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.900e-40
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 SKMQGVMSAELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            SKMQGVMS+ELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADEL+ QQGMAHLVEHVAYMGSRKR
Sbjct:  268 SKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELESQQGMAHLVEHVAYMGSRKR 342
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.140e-31
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   16 VMSAELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            V+ A LP+HP MR G+LPNGLRYIIL N SPPERFEAHLEVFAGSADELD QQGMAHLVEH+AYMGSRKR
Sbjct:   12 VLRAALPSHPLMRSGVLPNGLRYIILPNASPPERFEAHLEVFAGSADELDKQQGMAHLVEHIAYMGSRKR 81
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: A0A1E7FUG4_9STRA (Peptidase_M16 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FUG4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.290e-27
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   22 SAELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            S  LP HP +R G LPNGL Y+IL N+SPP RFEAHL+VF+GSADEL+ QQG+AHL EHVAYMGSRKR
Sbjct:  120 SEPLPVHPDVRSGTLPNGLPYVILPNKSPPGRFEAHLQVFSGSADELEPQQGIAHLTEHVAYMGSRKR 187
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: A0A1E7ETK2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETK2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.950e-26
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:   22 SAELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            S  LP HP++R G LPNGL Y+IL N+SPP RFEAHL+VF+GSADEL+ QQG+AHL EHVAYMGSRKR
Sbjct:  108 SEPLPVHPEVRSGTLPNGLPYVILPNKSPPGRFEAHLQVFSGSADELEPQQGIAHLTEHVAYMGSRKR 175
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: W7U2D5_9STRA (Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2D5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.090e-25
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 SKMQGVMSAELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            +++  +M  +LP HP +++G+LPNGLRY IL N +PP RF+A LE+FAGSADEL+ QQGMAH+VEH++YMGSRKR
Sbjct:  163 TRLAELMQTDLPEHPGLKKGVLPNGLRYAILRNAAPPGRFDAFLEIFAGSADELESQQGMAHIVEHISYMGSRKR 237
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: A0A7S4D551_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D551_HETAK)

HSP 1 Score: 105 bits (261), Expect = 2.830e-25
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:   16 VMSAELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            ++ + LP HP+++ G+L NGL Y+IL N +P  RFE HLEVFAGS+DEL+HQQGMAHLVEH++YMGSRKR
Sbjct:  107 LLDSPLPNHPKIKAGVLSNGLHYLILPNAAPEGRFECHLEVFAGSSDELEHQQGMAHLVEHISYMGSRKR 176
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: A0A7S2SQE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQE6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.700e-25
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   31 LPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            LP HP +R G L NGLRY++L NQSP  RFEAHLE+ AGSADELD QQGMAHLVEH+ YMGSRKR
Sbjct:  130 LPLHPDLRTGTLSNGLRYVLLPNQSPAGRFEAHLEILAGSADELDKQQGMAHLVEHIVYMGSRKR 194
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BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: A0A7S2SQG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQG9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.770e-25
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   31 LPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            LP HP +R G L NGLRY++L NQSP  RFEAHLE+ AGSADELD QQGMAHLVEH+ YMGSRKR
Sbjct:  130 LPLHPDLRTGTLSNGLRYVLLPNQSPAGRFEAHLEILAGSADELDKQQGMAHLVEHIVYMGSRKR 194
[Close]
BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Match: F0Y2Q1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Q1_AURAN)

HSP 1 Score: 106 bits (264), Expect = 5.140e-25
Identity = 51/65 (78.46%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   31 LPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELDHQQGMAHLVEHVAYMGSRKR 225
            LP+HP+   G LPNGL Y+IL N SP  RFEAHLEVFAGSADE D QQGMAHLVEHVAYMGSRKR
Sbjct:   50 LPSHPEFVRGRLPNGLEYVILPNASPAGRFEAHLEVFAGSADENDDQQGMAHLVEHVAYMGSRKR 114
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10243.206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0R1_ECTSI3.820e-4096.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY0_9PHAE3.900e-4096.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C760_9STRA3.140e-3184.29Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A1E7FUG4_9STRA1.290e-2773.53Peptidase_M16 domain-containing protein n=1 Tax=Fr... [more]
A0A1E7ETK2_9STRA7.950e-2673.53Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
W7U2D5_9STRA1.090e-2562.67Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S4D551_HETAK2.830e-2565.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SQE6_9STRA3.700e-2575.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SQG9_9STRA3.770e-2575.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y2Q1_AURAN5.140e-2578.46Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10243contigF-distichus_contig10243:8167..9990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue7.1e-33
Seed eggNOG ortholog2880.D7G0R1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size228
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10243.206.1prot_F-distichus_contig10243.206.1Fucus distichus monoicouspolypeptideF-distichus_contig10243 8173..9990 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.220062-UTR-F-distichus_contig10243:8166..81721622928941.220062-UTR-F-distichus_contig10243:8166..8172Fucus distichus monoicousUTRF-distichus_contig10243 8167..8172 +
1690885075.1644974-UTR-F-distichus_contig10243:8166..81721690885075.1644974-UTR-F-distichus_contig10243:8166..8172Fucus distichus monoicousUTRF-distichus_contig10243 8167..8172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.231331-CDS-F-distichus_contig10243:8172..82141622928941.231331-CDS-F-distichus_contig10243:8172..8214Fucus distichus monoicousCDSF-distichus_contig10243 8173..8214 +
1690885075.1814528-CDS-F-distichus_contig10243:8172..82141690885075.1814528-CDS-F-distichus_contig10243:8172..8214Fucus distichus monoicousCDSF-distichus_contig10243 8173..8214 +
1622928941.2457151-CDS-F-distichus_contig10243:8948..90351622928941.2457151-CDS-F-distichus_contig10243:8948..9035Fucus distichus monoicousCDSF-distichus_contig10243 8949..9035 +
1690885075.190139-CDS-F-distichus_contig10243:8948..90351690885075.190139-CDS-F-distichus_contig10243:8948..9035Fucus distichus monoicousCDSF-distichus_contig10243 8949..9035 +
1622928941.26122-CDS-F-distichus_contig10243:9897..99901622928941.26122-CDS-F-distichus_contig10243:9897..9990Fucus distichus monoicousCDSF-distichus_contig10243 9898..9990 +
1690885075.2025473-CDS-F-distichus_contig10243:9897..99901690885075.2025473-CDS-F-distichus_contig10243:9897..9990Fucus distichus monoicousCDSF-distichus_contig10243 9898..9990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10243.206.1

>prot_F-distichus_contig10243.206.1 ID=prot_F-distichus_contig10243.206.1|Name=mRNA_F-distichus_contig10243.206.1|organism=Fucus distichus monoicous|type=polypeptide|length=74bp
MQGVMSAELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSAD
ELDHQQGMAHLVEHVAYMGSRKR*
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mRNA from alignment at F-distichus_contig10243:8167..9990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10243.206.1 ID=mRNA_F-distichus_contig10243.206.1|Name=mRNA_F-distichus_contig10243.206.1|organism=Fucus distichus monoicous|type=mRNA|length=1824bp|location=Sequence derived from alignment at F-distichus_contig10243:8167..9990+ (Fucus distichus monoicous)
AGCAAAATGCAGGGAGTCATGTCGGCGGAGCTGCCTACGCACCCACAGGT
TAGCCCCTGTCTTTATCGCGCGAAAGCCCAGCGCCTAACAGCAGGCAGAG
AAGAGCCGTAGGCGCCGCGATTTTCACGTCGGGTTCGAGCTCGTAGTAGG
AAGGGAGACTTTTTTTTCGCCCATGATTGGAATCGTTGTCGCCTCGAGGT
GGGCGGTAAGTTGGTGTTGACTTTGCACATGCGCATTTGTACTCCTCTGA
TACTCCTCTGAGAAGGCGGCGTGGGAAAAGGCAATTGAAATATTCTGGCA
TTTTGGCGATCGCCCCCCGGCGTTTTGCGCGACCTCGGGCAGGACAGGAA
AAAGCCCGTGGTTTGCGGGAAATTCTCAGCGCGCAAACCTGAAAAAAAAT
CGTGGAATCGACTTCGCGCACTGTCGATGTTACGTACCGGGCGGGCGTCC
AGGGTCAGCTTTTGTCGTGAAGAGAAACACTTGATATCAAAATACTTTTG
AAAGCAAAAAATATGGAAGAAAACCCCTGAAATTGAGTTTTAAGCCGGAT
TTCCTTGTTTTGAAAATATACCGACAAGAAATCTCGAAATTAATATTCCG
GAGGCAACCAGGTCGATAAATTGGTACGGTAGTTTTTTCAATAGTCGGCT
CAGCGAAAGGTTTATTTTGAGTTACTAACCCTACGCCACCCAAAATATCA
GGGTTTTGTTTTTTCAAAAACATTTTCTTGTTTTTCCTTGATTTTTTGCG
CTGATCTCTTTCTTGCCTTGGCGTCGGTGAAGATGCGGGAAGGCATGCTT
CCGAACGGGCTGCGGTACATTATCCTCAACAACCAGAGCCCTCCTGAGAG
GTTCGAGGCCCACCTGGAGGTACGCTATTTATTTAGTTTTTACTCCATTT
TGTTTTCGTACTACAGAATTCACCCCCATTTTTCTGCCCGAGTGATCTGC
AAGCAAGCACCGCTACAAAAAAACACCATATTGGAGTGAAATAACATTTT
TATTGAAACAAAAATTTGAACGCACCTAGCCCTTCTCAGCATCCCCCAGT
CAGAGGGGGACAAATGGCAAAAACGTTTAGGTGGGATCATAGGCTTCGAA
GACAGGACCCCTTCATGGCATTGTTTTTATTTTTATTTTTATTTCTTCTT
GCTTTTGATCGAGAAATCAAAAATATCACCATGCACGGTTATTTTTCCTT
CCGCCCCCTCACCCTCCCTCTGCCCGCCCTTGCATTTTTTTCCGGCCAAG
AGAAAAAGTCGAGCGCTGCCAAAATGCCCGGGAAAATTTAGCGGAAACCT
TGTTTTCGCGGTTTCATCTTGTTTTTAGTGTATCGATCACCCTACTGCGA
TCAAAACATTTTTTACTTGCAGACTCGTATCTCTCCCCGATTCCCGCAGA
CGTGTTTTTTTTTTATAATCGGCAAGCAAATTCAGCAATCGCACCCCTAT
TTGGCCCGGGAACCGACTGTTTAATGTTTCCAAAATTTTCATTTTAGTCT
TTTGTTCTCACTCATTTTTCGCCACAACAAGTTAGAAGGTATAGGCGCGT
TCTGATTTTTCTGTAAACAAACCAAGAAGAAACTCAAACTCAAAAAAAAA
ATCGCTCCATATCGGAGGACTTCGAGGTTTACCTGTTTAAACTACAGTAG
ATCTGGATTGTATGTTACGAATTAATGTGAAGTCAATCGAATGTATAGTG
AAAACATGTAAAACATGTAAAACATTCACAGGTTTTCGCAGGATCGGCGG
ATGAGCTGGATCATCAGCAGGGAATGGCCCACTTAGTGGAGCACGTGGCC
TACATGGGCAGCAGGAAGAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig10243:8167..9990+

>mRNA_F-distichus_contig10243.206.1 ID=mRNA_F-distichus_contig10243.206.1|Name=mRNA_F-distichus_contig10243.206.1|organism=Fucus distichus monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at F-distichus_contig10243:8167..9990+ (Fucus distichus monoicous)
ATGCAGGGAGTCATGTCGGCGGAGCTGCCTACGCACCCACAGATGCAGGG
AGTCATGTCGGCGGAGCTGCCTACGCACCCACAGATGCGGGAAGGCATGC
TTCCGAACGGGCTGCGGTACATTATCCTCAACAACCAGAGCCCTCCTGAG
AGGTTCGAGGCCCACCTGGAGATGCGGGAAGGCATGCTTCCGAACGGGCT
GCGGTACATTATCCTCAACAACCAGAGCCCTCCTGAGAGGTTCGAGGCCC
ACCTGGAGGTTTTCGCAGGATCGGCGGATGAGCTGGATCATCAGCAGGGA
ATGGCCCACTTAGTGGAGCACGTGGCCTACATGGGCAGCAGGAAGAGGTG
AGTTTTCGCAGGATCGGCGGATGAGCTGGATCATCAGCAGGGAATGGCCC
ACTTAGTGGAGCACGTGGCCTACATGGGCAGCAGGAAGAGGTGA
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