mRNA_F-distichus_contig10243.205.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10243.205.1
Unique NamemRNA_F-distichus_contig10243.205.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10243.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10243contigF-distichus_contig10243:5427..8031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size674
Cds size672
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.162333-CDS-F-distichus_contig10243:5426..57001622928941.162333-CDS-F-distichus_contig10243:5426..5700Fucus distichus monoicousCDSF-distichus_contig10243 5427..5700 +
1690885075.1396952-CDS-F-distichus_contig10243:5426..57001690885075.1396952-CDS-F-distichus_contig10243:5426..5700Fucus distichus monoicousCDSF-distichus_contig10243 5427..5700 +
1622928941.1832259-CDS-F-distichus_contig10243:7633..80311622928941.1832259-CDS-F-distichus_contig10243:7633..8031Fucus distichus monoicousCDSF-distichus_contig10243 7634..8031 +
1690885075.1512363-CDS-F-distichus_contig10243:7633..80311690885075.1512363-CDS-F-distichus_contig10243:7633..8031Fucus distichus monoicousCDSF-distichus_contig10243 7634..8031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10243.205.1prot_F-distichus_contig10243.205.1Fucus distichus monoicouspolypeptideF-distichus_contig10243 5427..8031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10243.205.1

>prot_F-distichus_contig10243.205.1 ID=prot_F-distichus_contig10243.205.1|Name=mRNA_F-distichus_contig10243.205.1|organism=Fucus distichus monoicous|type=polypeptide|length=224bp
RAQGRKTLPSPGDRARSKEKITGAPMVPLSDVLLRDTGGSSRCSSSTSTT
ISRTRRRRAPGEMATSSLVLAAVALRGTSVAANSAGTVGFVGDTGAVATP
AFQIPTGVWVSRAKAFSSTTHAGLDARLPSPWARPRARIPSDPAPTSMAT
PSPNPADASAARGRIARFPFVDGFGRGFNTLVSRQRQLGGRATAREMAEP
SSSTDGGSGSSSSGGGKGMGAPWF
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mRNA from alignment at F-distichus_contig10243:5427..8031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10243.205.1 ID=mRNA_F-distichus_contig10243.205.1|Name=mRNA_F-distichus_contig10243.205.1|organism=Fucus distichus monoicous|type=mRNA|length=2605bp|location=Sequence derived from alignment at F-distichus_contig10243:5427..8031+ (Fucus distichus monoicous)
CGGGCCCAAGGAAGGAAAACGCTGCCTTCTCCCGGGGACAGAGCCAGGTC
GAAAGAAAAAATCACTGGAGCTCCAATGGTTCCCCTTAGTGATGTGTTAT
TACGGGACACGGGGGGAAGCAGTCGCTGCAGCAGCAGCACTTCCACCACC
ATCTCCAGGACGAGAAGGAGGCGAGCTCCAGGCGAGATGGCGACCTCTTC
ACTTGTCCTGGCCGCTGTTGCATTGAGGGGAACATCTGTCGCTGCAAATT
CTGCGGGAACCGTTGGATTCGTAGGTGAGACTTCGCTTGGAATTCCCGTT
CCCACGACCGCATTTCGTCCTGGCGTCTTTGCGCTTGTCAATATTTTATT
ATATTTGTGTCAACGCAGAACGCCACGCGCGACCGTTTCGTGGTTGCTGA
TTTGACAACGCAGACTATTATAGAAGAGGCACCTCGGCACCGTTGAGTTC
TGCTGTACTTAATACTACACGTACAAGTACTCTCAAACTATGTGTAACCG
TGCGGACTTCATTTAACTGCAATACAGCTGTCTATGATTGATGCTCTGTA
GTCGATGCCTGTCACTAGAACAAGGGGAAGTAGGCAGCACATGGAGTGGC
TCACCACGATCTGTTTGAACTTGTGCAGTACATTTGGAGGACTAGACTAC
CGTCGTCTTGTCTTGAACCAGTGAAGGACTTGTCACCCTTATGACCGGCC
GCAGTTATTTTCCACGTTCAAGATCAGCTCAGAAGGTCTAGGTGCGTTCT
GTATTTTCTTCAAAAATCACCTCGTGCCCCCTCCCAGAGCCTCGATTTTT
CCCATGGGAGCTTCGGGGTACAAGGATTACTGTCGCCGGAGTCGGGATGA
TTGGAAACTACTTACGCTGTAGCATTTGACGCGACCGTGTCTCGTTCTTG
GTTTCTAACAAACCGCCGATACTTTCAACTTCATACCAATACAAGTAGTG
GGTGTGGGAAAGAGATGCGCATATTAATTGGTCCATGGTGACTTGCCAAG
GCAGCGCCCGTTCGGAACTACCTTGAGGTCTACTGGCCCTGTGCTGGCGG
ACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGATAAACT
CGGGACTGACCCGATCGCGTATGACGGTTTAAATAAATAAATGAACGCCG
CCGTGGAACTCGGGAGGGATCCCGTAAGTAATCACCAGATTCAGCCTGAG
TATGACGCGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAGATTCTCA
GGCGCGAACAAGGACAGGGAAAAATCATTTTCCCTGTTCAGGTGACCACG
AGCAGGATTGAAAACCTTACCCGGTTGACCCCTACCGTTGCCATACGTAA
TGACCATACAAAATAAATAGTCGAAGACGGTTGGTTCGCCTCCACTTGAC
GATTTCCACCCCAAATTTTGCACTCTGTCTACAAGTACATATTGTATAAG
TACTCGAACGTACAGATTGCTCTCTCTCCCAACGAACTCTGAAAAAAGAT
ACTTGTGCTTTTTCAAGGTATCATTGCGTAGTACGGTATTTCGGAGAAGG
CGTAATCGTATCAAAGATACAACAGCGGTGCAGAGGCCGAGAGGACTTTT
CTAGACGTTGGAGACACCGGGCACGCGTATAATGCTGTTGTACAGACTCC
CCGGTGGTCCTTCCGTACTGTACAAGTAGAGCAGGTACTTGCGTCGATAA
GGGCACAGAGTCCCCCGAGGCTCAACGTGCGCACCAATCGCTAAAGCAGG
GATTGAGGACACAGGCCATCGGATTGATTGATGACATCTACTTCGTATGT
AATAGTCTTGTTGCAAGATCTCTGGAAACACGCCCGAAGCCCTTCGAGCA
TCCAAAACCTTCCTTCACACCCCTCCTCGCGGTAAAAAATCTTGGGCGCC
TCGCTCGCTTGCCGTAGCACGGCCTTTTGTCGTGAGAAAATTCTCCAGAC
AACAGCAATGAGCTATGATACATGGTTTACCGCTATTTCGATTGATGTAT
TTACTGCATACGGTAGTAATGTAAAAAAATAAATGAAATTAAGATCGCCG
CCTCCCATCCGCCTTCGCGAGTTGTTTAAAGGATCCGATTCATCGTCTTA
TGGAACACCGATGCACAGCCCGAATGAGGTATTTGCGTCGCCTTCTCCAA
CTCCCCCTTGCCACCCGGTCCCATCGCTTAATGTCGCTTGCTTGTGTCGC
CGATCAGGAGACACCGGAGCGGTAGCGACCCCCGCCTTCCAGATCCCAAC
GGGCGTATGGGTTTCTAGAGCGAAAGCGTTTTCGTCGACGACGCATGCCG
GTCTCGACGCGCGGTTGCCGTCGCCGTGGGCTCGCCCGCGGGCACGAATC
CCCTCCGACCCCGCCCCGACAAGCATGGCAACTCCGTCTCCGAACCCTGC
CGATGCCTCTGCCGCCCGCGGAAGAATCGCTCGGTTTCCGTTCGTTGACG
GTTTCGGTAGGGGTTTCAACACCCTCGTTTCTCGCCAACGCCAACTCGGT
GGCCGCGCCACGGCGCGGGAAATGGCTGAGCCCAGTTCCTCTACCGACGG
AGGCAGCGGGAGCAGCAGCAGCGGAGGGGGCAAGGGGATGGGAGCGCCCT
GGTTC
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Coding sequence (CDS) from alignment at F-distichus_contig10243:5427..8031+

>mRNA_F-distichus_contig10243.205.1 ID=mRNA_F-distichus_contig10243.205.1|Name=mRNA_F-distichus_contig10243.205.1|organism=Fucus distichus monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at F-distichus_contig10243:5427..8031+ (Fucus distichus monoicous)
CGGGCCCAAGGAAGGAAAACGCTGCCTTCTCCCGGGGACAGAGCCAGGTC
GAAAGAAAAAATCACTGGAGCTCCAATGGTTCCCCTTAGTGATGTGTTAT
TACGGGACACGGGGGGAAGCAGTCGCTGCAGCAGCAGCACTTCCACCACC
ATCTCCAGGACGAGAAGGAGGCGAGCTCCAGGCGAGATGGCGACCTCTTC
ACTTGTCCTGGCCGCTGTTGCATTGAGGGGAACATCTGTCGCTGCAAATT
CTGCGGGAACCGTTGGATTCGTAGCGGGCCCAAGGAAGGAAAACGCTGCC
TTCTCCCGGGGACAGAGCCAGGTCGAAAGAAAAAATCACTGGAGCTCCAA
TGGTTCCCCTTAGTGATGTGTTATTACGGGACACGGGGGGAAGCAGTCGC
TGCAGCAGCAGCACTTCCACCACCATCTCCAGGACGAGAAGGAGGCGAGC
TCCAGGCGAGATGGCGACCTCTTCACTTGTCCTGGCCGCTGTTGCATTGA
GGGGAACATCTGTCGCTGCAAATTCTGCGGGAACCGTTGGATTCGTAGGA
GACACCGGAGCGGTAGCGACCCCCGCCTTCCAGATCCCAACGGGCGTATG
GGTTTCTAGAGCGAAAGCGTTTTCGTCGACGACGCATGCCGGTCTCGACG
CGCGGTTGCCGTCGCCGTGGGCTCGCCCGCGGGCACGAATCCCCTCCGAC
CCCGCCCCGACAAGCATGGCAACTCCGTCTCCGAACCCTGCCGATGCCTC
TGCCGCCCGCGGAAGAATCGCTCGGTTTCCGTTCGTTGACGGTTTCGGTA
GGGGTTTCAACACCCTCGTTTCTCGCCAACGCCAACTCGGTGGCCGCGCC
ACGGCGCGGGAAATGGCTGAGCCCAGTTCCTCTACCGACGGAGGCAGCGG
GAGCAGCAGCAGCGGAGGGGGCAAGGGGATGGGAGCGCCCTGGTTCGAGA
CACCGGAGCGGTAGCGACCCCCGCCTTCCAGATCCCAACGGGCGTATGGG
TTTCTAGAGCGAAAGCGTTTTCGTCGACGACGCATGCCGGTCTCGACGCG
CGGTTGCCGTCGCCGTGGGCTCGCCCGCGGGCACGAATCCCCTCCGACCC
CGCCCCGACAAGCATGGCAACTCCGTCTCCGAACCCTGCCGATGCCTCTG
CCGCCCGCGGAAGAATCGCTCGGTTTCCGTTCGTTGACGGTTTCGGTAGG
GGTTTCAACACCCTCGTTTCTCGCCAACGCCAACTCGGTGGCCGCGCCAC
GGCGCGGGAAATGGCTGAGCCCAGTTCCTCTACCGACGGAGGCAGCGGGA
GCAGCAGCAGCGGAGGGGGCAAGGGGATGGGAGCGCCCTGGTTC
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