mRNA_F-distichus_contig102336.201.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102336.201.1
Unique NamemRNA_F-distichus_contig102336.201.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: D8LIZ2_ECTSI (Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ2_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 7.200e-57
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:    1 QVLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALGRLPVAYLTCNGSPPVGNTPSLMTFRE 309
            +VLEGMF LAGRLFGVSIT ADGEAE+WNPDVRFF+IKD  SG+HVASFYLDAYSRPENKRGGAWMGVC+G S+ALGR PVAYLTCNGSPPVG+TPSLMTFRE
Sbjct:  410 EVLEGMFDLAGRLFGVSITPADGEAEVWNPDVRFFNIKDTASGEHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFRE 512
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: A0A7S2WWB3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWB3_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.850e-45
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 QVLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALGRLPVAYLTCNGSPPVGNTPSLMTFRE 309
             VL G+FGL  R++GV I  ADGEA IW+PDV+FF + D+ SG+H+ASFYLD YSRPE+KRGGAWM VC+G+S+AL R PVAYLTCNGSPPVG+ PSLMTF E
Sbjct:  121 NVLNGLFGLCKRIYGVDIVRADGEAPIWHPDVQFFRVMDEESGEHIASFYLDPYSRPESKRGGAWMDVCVGKSQALDRKPVAYLTCNGSPPVGDKPSLMTFNE 223
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: I2CQQ3_NANGC (Oligopeptidase A n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQQ3_NANGC)

HSP 1 Score: 164 bits (415), Expect = 4.790e-45
Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 QVLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALGRLPVAYLTCNGSPPVGNTPSLMTFRE 309
             VL+G+F L+ R+FG+ I AADGE E+W+P VRF+ + D  S +H+ASFYLD YSRPENKRGGAWM VC G+SR LGR PVAYLTCNGSPPVG+TPSLMTFRE
Sbjct:  487 NVLDGLFSLSRRIFGIEIVAADGEVEVWDPAVRFYKVLDAESQEHIASFYLDPYSRPENKRGGAWMDVCTGKSRVLGRKPVAYLTCNGSPPVGDTPSLMTFRE 589
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: A0A7S1YUM4_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YUM4_TRICV)

HSP 1 Score: 157 bits (397), Expect = 5.120e-44
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    4 VLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALGR-LPVAYLTCNGSPPVGNTPSLMTFRE 309
            VL+GMFGL  R+F V + AADGEAE+W+PDVRFF++KD  +G  +ASFYLD +SRP +KRGGAWM VC+G+S A  R +PVAYLTCNGSPPVG+TPSLMTFRE
Sbjct:  246 VLDGMFGLVRRIFDVEVVAADGEAEVWHPDVRFFNVKDASTGKRIASFYLDPFSRPADKRGGAWMDVCIGKSEACDRDVPVAYLTCNGSPPVGDTPSLMTFRE 348
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: A0A7S2BVY6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVY6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.570e-44
Identity = 70/103 (67.96%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 QVLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALGRLPVAYLTCNGSPPVGNTPSLMTFRE 309
             VL+G+FGL  R+FGV I  ADGEA +W+ DV+FF + D+ SG+H+ASF+LD YSRPE KRGGAWM VC+GRS+ L R PVAYLTCNGSPPVG+ PSLMTF E
Sbjct:  155 NVLDGLFGLCKRIFGVDIVRADGEATVWHEDVQFFKVLDETSGEHIASFFLDPYSRPETKRGGAWMDVCIGRSQVLDRKPVAYLTCNGSPPVGDKPSLMTFNE 257
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: A0A7S2WXF7_9STRA (Oligopeptidase A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WXF7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.820e-44
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 QVLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALGRLPVAYLTCNGSPPVGNTPSLMTFRE 309
             VL G+FGL  R++GV I  ADGEA IW+PDV+FF + D+ SG+H+ASFYLD YSRPE+KRGGAWM VC+G+S+AL R PVAYLTCNGSPPVG+ PSLMTF E
Sbjct:  443 NVLNGLFGLCKRIYGVDIVRADGEAPIWHPDVQFFRVMDEESGEHIASFYLDPYSRPESKRGGAWMDVCVGKSQALDRKPVAYLTCNGSPPVGDKPSLMTFNE 545
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: A0A836CFP0_9STRA (Oligopeptidase A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFP0_9STRA)

HSP 1 Score: 157 bits (398), Expect = 4.870e-43
Identity = 74/103 (71.84%), Postives = 81/103 (78.64%), Query Frame = 1 
Query:    1 QVLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALGRLPVAYLTCNGSPPVGNTPSLMTFRE 309
            +VL GMF  A  LFGVSI  ADGE E W+PDVRFF + D  SG  +ASFYLD YSRPENKRGGAWM VC+GRS  L RLPVAYLTCNG+PPV + PSLMTFRE
Sbjct:  344 EVLGGMFETARTLFGVSIVPADGETETWHPDVRFFHVNDAASGARIASFYLDPYSRPENKRGGAWMDVCVGRSAVLDRLPVAYLTCNGTPPVADAPSLMTFRE 446
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: A0A6U4CXW2_9STRA (Oligopeptidase A n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CXW2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.560e-43
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 QVLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALGRLPVAYLTCNGSPPVGNTPSLMTFRE 309
            +VL G+FGLA RLFGV+I  A+G+AE+W+ DV F+ +KD  +G+H+ASF+LD YSRP  KRGGAWM VC+GRS+ L R PVAYLTCNGSPPVG+ PSLMTFRE
Sbjct:  387 KVLPGLFGLAERLFGVTIEEANGDAEVWHEDVSFYKVKDTTTGEHIASFFLDPYSRPAEKRGGAWMDVCIGRSKVLSRKPVAYLTCNGSPPVGDKPSLMTFRE 489
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: A0A7S2UAN3_9STRA (Oligopeptidase A n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAN3_9STRA)

HSP 1 Score: 158 bits (399), Expect = 7.260e-43
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    4 VLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALG-RLPVAYLTCNGSPPVGNTPSLMTFRE 309
            VL+GMFGL  R+F V + AADGEAE+WNPDVRFF+I DK + +H++SFYLD YSRP +KRGGAWM VC+G+S A   ++PVAYLTCNGSPPVG+TPSLMTF E
Sbjct:  477 VLDGMFGLVDRIFNVEVKAADGEAEVWNPDVRFFNIYDKDTKEHISSFYLDPYSRPADKRGGAWMDVCIGKSEACDQKIPVAYLTCNGSPPVGDTPSLMTFNE 579
[Close]
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Match: A0A7S1B442_9STRA (Oligopeptidase A n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B442_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.210e-42
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    4 VLEGMFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYSRPENKRGGAWMGVCMGRSRALG-RLPVAYLTCNGSPPVGNTPSLMTFRE 309
            VLEG+FGLAGRLF + I AA+G+AE+WN DV FF +KD+ +G HVASFYLD YSRP +KRGGAWM VC+G+S+A+G  +PVAYLTCNGSPP    PSLMTFRE
Sbjct:  457 VLEGLFGLAGRLFDIDIEAAEGQAEVWNEDVSFFHVKDRSTGKHVASFYLDPYSRPADKRGGAWMDVCLGKSKAMGCDVPVAYLTCNGSPPSDGKPSLMTFRE 559
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102336.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ2_ECTSI7.200e-5787.38Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus sil... [more]
A0A7S2WWB3_9STRA1.850e-4569.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CQQ3_NANGC4.790e-4570.87Oligopeptidase A n=1 Tax=Nannochloropsis gaditana ... [more]
A0A7S1YUM4_TRICV5.120e-4469.90Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
A0A7S2BVY6_9STRA5.570e-4467.96Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WXF7_9STRA6.820e-4469.90Oligopeptidase A n=1 Tax=Rhizochromulina marina Ta... [more]
A0A836CFP0_9STRA4.870e-4371.84Oligopeptidase A n=1 Tax=Tribonema minus TaxID=303... [more]
A0A6U4CXW2_9STRA6.560e-4367.96Oligopeptidase A n=1 Tax=Phaeomonas parva TaxID=12... [more]
A0A7S2UAN3_9STRA7.260e-4369.90Oligopeptidase A n=1 Tax=Attheya septentrionalis T... [more]
A0A7S1B442_9STRA1.210e-4269.90Oligopeptidase A n=1 Tax=Corethron hystrix TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102336contigF-distichus_contig102336:754..1783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue4.8e-45
Seed eggNOG ortholog2880.D8LIZ2
Preferred namePRD1
KEGG koko:K01392,ko:K01405,ko:K01414,ko:K13726
KEGG Pathwayko04614,ko05143,map04614,map05143
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005773,GO:0005794,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0012505,GO:0016787,GO:0019538,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0339@1,KOG2089@2759
EC3.4.24.15,3.4.24.37,3.4.24.70
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons2
Model size309
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102336.201.1prot_F-distichus_contig102336.201.1Fucus distichus monoicouspolypeptideF-distichus_contig102336 769..1783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.046325-UTR-F-distichus_contig102336:753..7681622928940.046325-UTR-F-distichus_contig102336:753..768Fucus distichus monoicousUTRF-distichus_contig102336 754..768 +
1690885075.0208225-UTR-F-distichus_contig102336:753..7681690885075.0208225-UTR-F-distichus_contig102336:753..768Fucus distichus monoicousUTRF-distichus_contig102336 754..768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.0559375-CDS-F-distichus_contig102336:768..8831622928940.0559375-CDS-F-distichus_contig102336:768..883Fucus distichus monoicousCDSF-distichus_contig102336 769..883 +
1690885075.0331364-CDS-F-distichus_contig102336:768..8831690885075.0331364-CDS-F-distichus_contig102336:768..883Fucus distichus monoicousCDSF-distichus_contig102336 769..883 +
1622928940.070075-CDS-F-distichus_contig102336:1604..17831622928940.070075-CDS-F-distichus_contig102336:1604..1783Fucus distichus monoicousCDSF-distichus_contig102336 1605..1783 +
1690885075.0440645-CDS-F-distichus_contig102336:1604..17831690885075.0440645-CDS-F-distichus_contig102336:1604..1783Fucus distichus monoicousCDSF-distichus_contig102336 1605..1783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102336.201.1

>prot_F-distichus_contig102336.201.1 ID=prot_F-distichus_contig102336.201.1|Name=mRNA_F-distichus_contig102336.201.1|organism=Fucus distichus monoicous|type=polypeptide|length=98bp
MFGLAGRLFGVSITAADGEAEIWNPDVRFFSIKDKVSGDHVASFYLDAYS
RPENKRGGAWMGVCMGRSRALGRLPVAYLTCNGSPPVGNTPSLMTFRE
back to top

mRNA from alignment at F-distichus_contig102336:754..1783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102336.201.1 ID=mRNA_F-distichus_contig102336.201.1|Name=mRNA_F-distichus_contig102336.201.1|organism=Fucus distichus monoicous|type=mRNA|length=1030bp|location=Sequence derived from alignment at F-distichus_contig102336:754..1783+ (Fucus distichus monoicous)
CAGGTGTTGGAAGGGATGTTCGGCTTGGCTGGACGCCTGTTCGGGGTTTC
CATCACCGCTGCCGATGGGGAGGCGGAAATCTGGAACCCGGACGTGAGGT
TTTTCAGCATCAAGGACAAGGTCTCAGGAGGTCAGCCACGCTTCTCGGCG
ATGCTGTTTTTTTTCTTCGATTTTCTTCATTTTTCGTTTTTCCGTTTTTC
ATTTTTGTTTTTCATATATCATTTTTCGTTTTTCGTCATAACTCTATTTC
CCGATTCATTTCCCCCCAATTTTGTAGTCGGTCGGATGTCGTAGTGGGCT
TTGACTTCTCTGACCTCGCTACTTATCACCGTTCGAAGGAAAACGCCTGT
TTTAAAAAAGCCCCCAAAATATATGAAGTTTTAGGTTGCAAAAAAAAAAT
GTTTTGACAAAATCCCATCATATATAGCCATTACAGCTGAAGGTTTTGTA
AATGGCTAGCGATTGTATTTAGCCTGACGTCGAAAAAAAACAGGGAACCA
CTGCGACCTCTCGCTCATGCTGCATTAGTACAGTATACACTGAAGTAGAG
TCATTTGCCGCAGTAGAACATCAATTGCCGTGATAACTATCGATATTATA
GTAGATAGAGCAAGTTCGGCCACAAATTATGTATGGTCCCATTATAAATT
TTAGTCTCAAATTTTTGGTTGGAAATAAATAAATAAATATATACTACTAA
AGTATAGAACAAGTATTCGTCCCGCTGTACTGTAGGAGGGTTTGAAGGAA
GTGGATGCTCCCCTCCCCTCGATGGAACGATTTCCAATGATGCCGGCTTC
GTCCTCGCGGTGACCGTGTAACGATTTTCGTCCCGATGACGCCGCTGGCA
GATCACGTGGCGAGCTTTTATCTGGACGCGTACTCGCGGCCAGAGAACAA
GCGCGGAGGGGCCTGGATGGGCGTGTGCATGGGGCGGAGCCGGGCGCTGG
GCAGGCTCCCCGTCGCCTACCTGACTTGCAATGGGTCTCCGCCGGTTGGG
AATACGCCGAGCCTCATGACCTTCCGCGAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig102336:754..1783+

>mRNA_F-distichus_contig102336.201.1 ID=mRNA_F-distichus_contig102336.201.1|Name=mRNA_F-distichus_contig102336.201.1|organism=Fucus distichus monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at F-distichus_contig102336:754..1783+ (Fucus distichus monoicous)
ATGTTCGGCTTGGCTGGACGCCTGTTCGGGGTTTCCATCACCGCTGCCGA
TGGGGAGGCGGAAATCTGGAACCCGGACGTGAGGTTTTTCAGCATCAAGG
ACAAGGTCTCAGGAGATGTTCGGCTTGGCTGGACGCCTGTTCGGGGTTTC
CATCACCGCTGCCGATGGGGAGGCGGAAATCTGGAACCCGGACGTGAGGT
TTTTCAGCATCAAGGACAAGGTCTCAGGAGATCACGTGGCGAGCTTTTAT
CTGGACGCGTACTCGCGGCCAGAGAACAAGCGCGGAGGGGCCTGGATGGG
CGTGTGCATGGGGCGGAGCCGGGCGCTGGGCAGGCTCCCCGTCGCCTACC
TGACTTGCAATGGGTCTCCGCCGGTTGGGAATACGCCGAGCCTCATGACC
TTCCGCGAGATCACGTGGCGAGCTTTTATCTGGACGCGTACTCGCGGCCA
GAGAACAAGCGCGGAGGGGCCTGGATGGGCGTGTGCATGGGGCGGAGCCG
GGCGCTGGGCAGGCTCCCCGTCGCCTACCTGACTTGCAATGGGTCTCCGC
CGGTTGGGAATACGCCGAGCCTCATGACCTTCCGCGAG
back to top