mRNA_F-distichus_contig102312.200.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102312.200.1
Unique NamemRNA_F-distichus_contig102312.200.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102312.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102312contigF-distichus_contig102312:1822..1995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.002972-UTR-F-distichus_contig102312:1821..18331622928940.002972-UTR-F-distichus_contig102312:1821..1833Fucus distichus monoicousUTRF-distichus_contig102312 1822..1833 +
1690885074.9997559-UTR-F-distichus_contig102312:1821..18331690885074.9997559-UTR-F-distichus_contig102312:1821..1833Fucus distichus monoicousUTRF-distichus_contig102312 1822..1833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.0140176-CDS-F-distichus_contig102312:1833..19951622928940.0140176-CDS-F-distichus_contig102312:1833..1995Fucus distichus monoicousCDSF-distichus_contig102312 1834..1995 +
1690885075.0103455-CDS-F-distichus_contig102312:1833..19951690885075.0103455-CDS-F-distichus_contig102312:1833..1995Fucus distichus monoicousCDSF-distichus_contig102312 1834..1995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102312.200.1prot_F-distichus_contig102312.200.1Fucus distichus monoicouspolypeptideF-distichus_contig102312 1834..1995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102312.200.1

>prot_F-distichus_contig102312.200.1 ID=prot_F-distichus_contig102312.200.1|Name=mRNA_F-distichus_contig102312.200.1|organism=Fucus distichus monoicous|type=polypeptide|length=54bp
MYLYTEEGKTVLGGISDTQMQTTLATALATSNQAMNNSAIDLTLSLVYTG
LVRH
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mRNA from alignment at F-distichus_contig102312:1822..1995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102312.200.1 ID=mRNA_F-distichus_contig102312.200.1|Name=mRNA_F-distichus_contig102312.200.1|organism=Fucus distichus monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at F-distichus_contig102312:1822..1995+ (Fucus distichus monoicous)
AAGATCGACGTAATGTACCTGTACACCGAGGAAGGAAAGACTGTACTCGG
AGGAATCAGCGACACCCAGATGCAGACGACGCTCGCCACGGCGCTCGCCA
CATCGAACCAGGCCATGAATAACTCGGCCATCGATCTCACGCTCTCGCTC
GTGTATACCGGATTGGTAAGACAT
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Coding sequence (CDS) from alignment at F-distichus_contig102312:1822..1995+

>mRNA_F-distichus_contig102312.200.1 ID=mRNA_F-distichus_contig102312.200.1|Name=mRNA_F-distichus_contig102312.200.1|organism=Fucus distichus monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at F-distichus_contig102312:1822..1995+ (Fucus distichus monoicous)
ATGTACCTGTACACCGAGGAAGGAAAGACTGTACTCGGAGGAATCAGCGA
CACCCAGATGCAGACGACGCTCGCCACGGCGCTCGCCACATCGAACCAGG
CCATGAATAACTCGGCCATCGATCTCACGCTCTCGCTCGTGTATACCGGA
TTGGTAAGACATATGTACCTGTACACCGAGGAAGGAAAGACTGTACTCGG
AGGAATCAGCGACACCCAGATGCAGACGACGCTCGCCACGGCGCTCGCCA
CATCGAACCAGGCCATGAATAACTCGGCCATCGATCTCACGCTCTCGCTC
GTGTATACCGGATTGGTAAGACAT
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