mRNA_F-distichus_contig102302.198.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102302.198.1
Unique NamemRNA_F-distichus_contig102302.198.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig102302.198.1 vs. uniprot
Match: A0A0B7MUW6_9FUNG (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7MUW6_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 1.980e-5
Identity = 36/123 (29.27%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:  238 IDSAYLPRSAHGYSKALIIIDSCTGYTIVYPSTSLQADAVKKHLQMYICSHPIPAEIKVDMGTEFRK-GLDSFLAK-YNIALNASKAYSKGSTSNAESAIRLVKSALRQLCLSHTANWPELLP 600
            +D  Y PR+A GYS ALI+ID  T +    P ++  A +    L  +IC +  P ++  D GT F+   L +++A  +++ +N    +        E A R +K+ L +    + A+W   LP
Sbjct:  141 MDYIYTPRTASGYSAALILIDYLTAWVHAEPVSTQSAASTCLVLFRWICQYGCPVQVIADNGTHFKALELKTYMADVFDVHINFGPPFHPQRQGKVERANRTLKNILTKYVNLYKADWDVYLP 263
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102302.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0B7MUW6_9FUNG1.980e-529.27Integrase catalytic domain-containing protein (Fra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102302contigF-distichus_contig102302:888..1565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.5
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog13616.ENSMODP00000040821
Hectar predicted targeting categoryother localisation
EggNOG free text desc.genomic stop codons
EggNOG OGs38GIZ@33154,3BMWT@33208,3CTK8@33213,48A4V@7711,48V4Y@7742,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size678
Cds size678
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928939.8767478-CDS-F-distichus_contig102302:887..15651622928939.8767478-CDS-F-distichus_contig102302:887..1565Fucus distichus monoicousCDSF-distichus_contig102302 888..1565 -
1690885074.9263806-CDS-F-distichus_contig102302:887..15651690885074.9263806-CDS-F-distichus_contig102302:887..1565Fucus distichus monoicousCDSF-distichus_contig102302 888..1565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102302.198.1prot_F-distichus_contig102302.198.1Fucus distichus monoicouspolypeptideF-distichus_contig102302 888..1565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102302.198.1

>prot_F-distichus_contig102302.198.1 ID=prot_F-distichus_contig102302.198.1|Name=mRNA_F-distichus_contig102302.198.1|organism=Fucus distichus monoicous|type=polypeptide|length=226bp
PQILCKEIVFSCHNKSGFHFKIPQLTSLLKPLIFHPDLDAFIKHTVQTCF
ICTISQQKRIRNLVGARRSNFYTPSQCLVIDSAYLPRSAHGYSKALIIID
SCTGYTIVYPSTSLQADAVKKHLQMYICSHPIPAEIKVDMGTEFRKGLDS
FLAKYNIALNASKAYSKGSTSNAESAIRLVKSALRQLCLSHTANWPELLP
LLVQGINSTGLYGTSTSRSNLYFSPY
back to top

mRNA from alignment at F-distichus_contig102302:888..1565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102302.198.1 ID=mRNA_F-distichus_contig102302.198.1|Name=mRNA_F-distichus_contig102302.198.1|organism=Fucus distichus monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at F-distichus_contig102302:888..1565- (Fucus distichus monoicous)
CCACAGATTTTATGTAAAGAGATTGTTTTCTCTTGTCACAATAAAAGTGG
TTTCCATTTCAAAATACCACAGTTAACTTCCTTACTTAAACCTTTAATCT
TCCACCCCGATTTAGATGCTTTTATCAAACACACAGTTCAGACTTGTTTC
ATATGTACCATTTCACAGCAGAAAAGAATCCGTAATCTAGTGGGAGCAAG
AAGAAGTAATTTTTACACACCATCACAATGTCTTGTTATTGACTCAGCAT
ATCTCCCAAGATCAGCCCACGGATATAGTAAGGCATTAATCATCATCGAT
AGCTGCACGGGTTACACAATAGTGTACCCCTCCACATCTTTGCAAGCAGA
TGCTGTCAAGAAACACCTACAAATGTATATCTGCTCCCACCCCATTCCAG
CAGAAATCAAAGTAGACATGGGGACTGAGTTTAGAAAAGGACTAGACAGT
TTCTTAGCCAAGTATAATATCGCCTTGAATGCTTCAAAAGCTTACAGCAA
GGGTAGCACTAGCAATGCTGAGAGTGCAATCCGCCTGGTTAAGTCAGCAT
TACGCCAACTCTGTCTATCCCACACTGCAAATTGGCCAGAATTGTTACCT
TTACTTGTCCAAGGCATCAATTCAACAGGACTTTATGGGACAAGTACATC
TCGTTCCAACCTTTATTTTAGTCCTTAC
back to top

Coding sequence (CDS) from alignment at F-distichus_contig102302:888..1565-

>mRNA_F-distichus_contig102302.198.1 ID=mRNA_F-distichus_contig102302.198.1|Name=mRNA_F-distichus_contig102302.198.1|organism=Fucus distichus monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at F-distichus_contig102302:888..1565- (Fucus distichus monoicous)
CCACAGATTTTATGTAAAGAGATTGTTTTCTCTTGTCACAATAAAAGTGG
TTTCCATTTCAAAATACCACAGTTAACTTCCTTACTTAAACCTTTAATCT
TCCACCCCGATTTAGATGCTTTTATCAAACACACAGTTCAGACTTGTTTC
ATATGTACCATTTCACAGCAGAAAAGAATCCGTAATCTAGTGGGAGCAAG
AAGAAGTAATTTTTACACACCATCACAATGTCTTGTTATTGACTCAGCAT
ATCTCCCAAGATCAGCCCACGGATATAGTAAGGCATTAATCATCATCGAT
AGCTGCACGGGTTACACAATAGTGTACCCCTCCACATCTTTGCAAGCAGA
TGCTGTCAAGAAACACCTACAAATGTATATCTGCTCCCACCCCATTCCAG
CAGAAATCAAAGTAGACATGGGGACTGAGTTTAGAAAAGGACTAGACAGT
TTCTTAGCCAAGTATAATATCGCCTTGAATGCTTCAAAAGCTTACAGCAA
GGGTAGCACTAGCAATGCTGAGAGTGCAATCCGCCTGGTTAAGTCAGCAT
TACGCCAACTCTGTCTATCCCACACTGCAAATTGGCCAGAATTGTTACCT
TTACTTGTCCAAGGCATCAATTCAACAGGACTTTATGGGACAAGTACATC
TCGTTCCAACCTTTATTTTAGTCCTTACCCACAGATTTTATGTAAAGAGA
TTGTTTTCTCTTGTCACAATAAAAGTGGTTTCCATTTCAAAATACCACAG
TTAACTTCCTTACTTAAACCTTTAATCTTCCACCCCGATTTAGATGCTTT
TATCAAACACACAGTTCAGACTTGTTTCATATGTACCATTTCACAGCAGA
AAAGAATCCGTAATCTAGTGGGAGCAAGAAGAAGTAATTTTTACACACCA
TCACAATGTCTTGTTATTGACTCAGCATATCTCCCAAGATCAGCCCACGG
ATATAGTAAGGCATTAATCATCATCGATAGCTGCACGGGTTACACAATAG
TGTACCCCTCCACATCTTTGCAAGCAGATGCTGTCAAGAAACACCTACAA
ATGTATATCTGCTCCCACCCCATTCCAGCAGAAATCAAAGTAGACATGGG
GACTGAGTTTAGAAAAGGACTAGACAGTTTCTTAGCCAAGTATAATATCG
CCTTGAATGCTTCAAAAGCTTACAGCAAGGGTAGCACTAGCAATGCTGAG
AGTGCAATCCGCCTGGTTAAGTCAGCATTACGCCAACTCTGTCTATCCCA
CACTGCAAATTGGCCAGAATTGTTACCTTTACTTGTCCAAGGCATCAATT
CAACAGGACTTTATGGGACAAGTACATCTCGTTCCAACCTTTATTTTAGT
CCTTAC
back to top