mRNA_F-distichus_contig102285.196.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102285.196.1
Unique NamemRNA_F-distichus_contig102285.196.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102285.196.1 vs. uniprot
Match: D8LJG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.340e-26
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 TSPANAAPYLYAVPPDLACFATLLKKFGVRPSFGPSDFCHALRRLADETSAAEPVVT 171
            TSPANAAPYLYAVPPDLACFATLLK+FGVRPSFGPSDFCHALRRLA ET AAEP++T
Sbjct:  896 TSPANAAPYLYAVPPDLACFATLLKRFGVRPSFGPSDFCHALRRLAVETGAAEPLLT 952
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BLAST of mRNA_F-distichus_contig102285.196.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 8.110e-26
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 TSPANAAPYLYAVPPDLACFATLLKKFGVRPSFGPSDFCHALRRLADETSAAEPVV 168
            TSPANAAPYLYAVPPDLACFATLLK+FGVRPSFGPSDFCHALRRLA ET AAEP+V
Sbjct:  168 TSPANAAPYLYAVPPDLACFATLLKRFGVRPSFGPSDFCHALRRLAVETGAAEPLV 223
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BLAST of mRNA_F-distichus_contig102285.196.1 vs. uniprot
Match: A0A7S2VVU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVU2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.040e-13
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 TSPANAAPYLYAVPPDLACFATLLKKFGVRPSFGPSDFCHALRRLADETSAAEPVV 168
            +SP NA PYLY VPPDLACF+ LLK FGVR  F  SDFC  L+R+ D+  + EP +
Sbjct:  949 SSPINATPYLYTVPPDLACFSNLLKTFGVRQKFTSSDFCQVLKRIHDQQHSDEPTL 1004
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BLAST of mRNA_F-distichus_contig102285.196.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.980e-12
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 TSPANAAPYLYAVPPDLACFATLLKKFGVRPSFGPSDFCHALRRLADETSA 153
            ++PANAAPYLY+VP D ACF  LL++ GVR +FGP DFC  LR +A ET A
Sbjct: 1478 SAPANAAPYLYSVPSDFACFGVLLRELGVREAFGPGDFCFVLRTMAIETHA 1528
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BLAST of mRNA_F-distichus_contig102285.196.1 vs. uniprot
Match: A0A7S2EBT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EBT1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.290e-12
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    4 SPANAAPYLYAVPPDLACFATLLKKFGVRPSFGPSDFCHALRRLADE 144
            S  NA PYLY VPPDLACF  LLK FGVR +F  SD+C  LRR+ADE
Sbjct:  105 SSVNATPYLYTVPPDLACFQILLKTFGVRDAFQSSDYCEVLRRMADE 151
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BLAST of mRNA_F-distichus_contig102285.196.1 vs. uniprot
Match: A0A7S2UD61_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD61_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.010e-9
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 TSPANAAPYLYAVPPDLACFATLLKKFGVRPSFGPSDFCHALRRLADE 144
            TS  NA PYL+ VPPDLA + +LLK FGVR SFG SDFC  L+ +A+E
Sbjct:  121 TSSINAVPYLFTVPPDLAVYRSLLKTFGVRDSFGSSDFCDVLQVMANE 168
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BLAST of mRNA_F-distichus_contig102285.196.1 vs. uniprot
Match: A0A7S3QAL4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.670e-8
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 TSPANAAPYLYAVPPDLACFATLLKKFGVRPSFGPSDFCHALRRLADETSA 153
            +S  NA PYL+ VPPDLAC+  LL  F +R +FG SD+C  L R+A +T +
Sbjct: 1310 SSSINAHPYLFTVPPDLACYRNLLSAFNIRDTFGSSDYCLVLNRMAKDTKS 1360
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102285.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LJG5_ECTSI4.340e-2691.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K688_9PHAE8.110e-2692.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2VVU2_9STRA3.040e-1358.93Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A835YL62_9STRA1.980e-1262.75RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2EBT1_9STRA2.290e-1268.09Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2UD61_9STRA1.010e-962.50Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3QAL4_9STRA1.670e-850.98Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102285contigF-distichus_contig102285:1191..1464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D8LJG5
KEGG koko:K17592
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons1
Model size276
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928938.908907-CDS-F-distichus_contig102285:1190..14631622928938.908907-CDS-F-distichus_contig102285:1190..1463Fucus distichus monoicousCDSF-distichus_contig102285 1191..1463 +
1690885074.8800023-CDS-F-distichus_contig102285:1190..14631690885074.8800023-CDS-F-distichus_contig102285:1190..1463Fucus distichus monoicousCDSF-distichus_contig102285 1191..1463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102285.196.1prot_F-distichus_contig102285.196.1Fucus distichus monoicouspolypeptideF-distichus_contig102285 1191..1463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102285.196.1

>prot_F-distichus_contig102285.196.1 ID=prot_F-distichus_contig102285.196.1|Name=mRNA_F-distichus_contig102285.196.1|organism=Fucus distichus monoicous|type=polypeptide|length=91bp
TSPANAAPYLYAVPPDLACFATLLKKFGVRPSFGPSDFCHALRRLADETS
AAEPVVTPPVTSSSSSGGQIRVGGGSGGTVRGMFEGLAARG
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mRNA from alignment at F-distichus_contig102285:1191..1464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102285.196.1 ID=mRNA_F-distichus_contig102285.196.1|Name=mRNA_F-distichus_contig102285.196.1|organism=Fucus distichus monoicous|type=mRNA|length=274bp|location=Sequence derived from alignment at F-distichus_contig102285:1191..1464+ (Fucus distichus monoicous)
ACGAGCCCTGCGAACGCCGCGCCGTATCTGTACGCCGTGCCTCCCGACCT
GGCCTGTTTCGCCACCCTTCTCAAGAAGTTCGGCGTGCGACCCTCTTTCG
GCCCCTCCGACTTCTGCCACGCTCTCCGCCGACTTGCGGACGAGACCAGC
GCCGCGGAACCGGTGGTTACTCCCCCCGTCACCTCCTCTTCGTCCTCCGG
GGGTCAGATTCGTGTGGGCGGCGGTAGCGGTGGCACCGTGAGGGGTATGT
TTGAGGGTTTGGCGGCAAGAGGTG
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Coding sequence (CDS) from alignment at F-distichus_contig102285:1191..1464+

>mRNA_F-distichus_contig102285.196.1 ID=mRNA_F-distichus_contig102285.196.1|Name=mRNA_F-distichus_contig102285.196.1|organism=Fucus distichus monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at F-distichus_contig102285:1191..1464+ (Fucus distichus monoicous)
ACGAGCCCTGCGAACGCCGCGCCGTATCTGTACGCCGTGCCTCCCGACCT
GGCCTGTTTCGCCACCCTTCTCAAGAAGTTCGGCGTGCGACCCTCTTTCG
GCCCCTCCGACTTCTGCCACGCTCTCCGCCGACTTGCGGACGAGACCAGC
GCCGCGGAACCGGTGGTTACTCCCCCCGTCACCTCCTCTTCGTCCTCCGG
GGGTCAGATTCGTGTGGGCGGCGGTAGCGGTGGCACCGTGAGGGGTATGT
TTGAGGGTTTGGCGGCAAGAGGTACGAGCCCTGCGAACGCCGCGCCGTAT
CTGTACGCCGTGCCTCCCGACCTGGCCTGTTTCGCCACCCTTCTCAAGAA
GTTCGGCGTGCGACCCTCTTTCGGCCCCTCCGACTTCTGCCACGCTCTCC
GCCGACTTGCGGACGAGACCAGCGCCGCGGAACCGGTGGTTACTCCCCCC
GTCACCTCCTCTTCGTCCTCCGGGGGTCAGATTCGTGTGGGCGGCGGTAG
CGGTGGCACCGTGAGGGGTATGTTTGAGGGTTTGGCGGCAAGAGGT
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