mRNA_F-distichus_contig102223.193.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102223.193.1
Unique NamemRNA_F-distichus_contig102223.193.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 7.650e-124
Identity = 221/457 (48.36%), Postives = 288/457 (63.02%), Query Frame = 1
Query:    1 DTPEARRVRASKLAHQRGGITKAASALISPPAAPQDSRTLATLRSKHPTEDPEAIATGKAQAERRAGITAVT-----------------VKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVQDLAAFATLVFS-SRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERL---GIE-----------GGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSHLLRTAPPSIT 1272
            DT + R+ RA++LAH+ GGITKAASALISP  +P+++ TL  LR+ HP EDP+ IAT    + + AG    T                 +K  +KKANPQSA GP GLR+S+LQA  + D   + LA F+  VF     LP  FW LHT+ANLSALG+K RP+A G VLRR+I   FC +Y   +A+ F++  Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K+F   P VPGA+ + ++DD+ V LPP L+ +I AIA VT W+Q+ L   GIE            G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+ +   G PAEL+R L  ++D QAS+Q+LRLS   RL HLLRT  PSIT
Sbjct:   36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 492          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 2.370e-121
Identity = 216/457 (47.26%), Postives = 287/457 (62.80%), Query Frame = 1
Query:    1 DTPEARRVRASKLAHQRGGITKAASALISPPAAPQDSRTLATLRSKHPTEDPEAIATGKAQAERRAGITAVT-----------------VKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVQDLAAFATLVFS-SRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERLGIEG--------------GVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSHLLRTAPPSIT 1272
            DT + R+ RA++LAH+ GGITKAASALISP  +P+++ TL  LR+ HP EDP+ IAT    + + AG    T                 +K  +KKANPQSA GP GLR+S+LQA  + D   + LA F+  VF     LP  FW LHT+ANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F++  Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K+F   P VPG + + ++DD+   LPP L+ ++ AI+ VT W+QERL  +G              G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+     G+PAEL+  L  ++D QAS+Q+LRLS   RL HLLRT  PSIT
Sbjct:   36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 492          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 395 bits (1016), Expect = 2.150e-120
Identity = 210/445 (47.19%), Postives = 288/445 (64.72%), Query Frame = 1
Query:   25 RASKLAHQRGGITKAASALISPPAAPQDSRTLATLRSKHPTEDPEAIATGKAQAERRA-----GITAV----------TVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVQDLAAFATLVFSSRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERLGIEG--------------GVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSHLLRTAPPSIT 1272
            RA  LAHQRGG++KAAS L++PP+ P+++ TL TLR KHP E  + IA    +A  R      G++ +          TV A I++ NPQ + GPSGLR+S LQ++L  EL + +A   +++F    LP  FW LHT+ANLSA+G K RP+A GD+ RR++G V CR+YG  LA++F+  GQYGVAV GG E++A  A L  ++G  +L+YD  NAFNS+ R   LPALA+++P ++PYA+N+YAREPPKLL+  D G   V+ SA GVQQGCNLGPLCYSAG LK+L+DFRANP V GA+ ++FIDD+ V+LP   + + AA   VT W+Q  +   G              G   +   E+ R  ++ T L V   GMR+VGVPVG   + +    D   GEP +L++ +  ++DAQAS QILR SA +RL+ LLR+ PP +T
Sbjct: 1084 RAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLT 1527          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 2.680e-119
Identity = 216/457 (47.26%), Postives = 287/457 (62.80%), Query Frame = 1
Query:    1 DTPEARRVRASKLAHQRGGITKAASALISPPAAPQDSRTLATLRSKHPTEDPEAIATGKAQAERRAGITAVT-----------------VKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVQDLAAFATLVFS-SRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERLGIEG--------------GVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSHLLRTAPPSIT 1272
            DT + R+ RA++LAH+ GGITKAASALISP  +P+++ TL  LR+ HP EDP+ IAT    + + AG    T                 +K  +KKANPQSA GP GLR+S+LQA  + D   + LA F+  VF     LP  FW LHT+ANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F++  Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K+F   P VPG + + ++DD+   LPP L+ ++ AI+ VT W+QERL  +G              G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+     G+PAEL+  L  ++D QAS+Q+LRLS   RL HLLRT  PSIT
Sbjct:   36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 492          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 1.080e-95
Identity = 170/351 (48.43%), Postives = 225/351 (64.10%), Query Frame = 1
Query:    1 DTPEARRVRASKLAHQRGGITKAASALISPPAAPQDSRTLATLRSKHPTEDPEAIATGKAQAERRAGITAVT-----------------VKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVQDLAAFATLVFS-SRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERLGIEG 996
            DT + R+ RA++LAH+ GGITKAASALISP  +P+++ TL  LR+ HP EDP+ IAT    + + AG    T                 +K  +KKANPQSA GP GLR+S+LQA  + D   + LA F+  VF     LP  FW LHT+ANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F++  Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K+F   P VPG + + ++DD+   LPP L+ ++ AI+ VT W+QERL  +G
Sbjct:   36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKG 386          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 3.720e-93
Identity = 163/340 (47.94%), Postives = 214/340 (62.94%), Query Frame = 1
Query:  298 LCDELVQDLAAFATLVFS-SRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERL---GIE-----------GGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSHLLRTAPPSIT 1272
            + D   + LA F+  VF     LP  FW LHT+ANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F++  Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +  Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K+F   P VPGA+ + ++DD+ V LPP L+ +I AIA VT W+Q+ L   GIE            G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+ +   G PAEL+  L  ++D Q S+Q+LR+S   RL HLLRT  PSIT
Sbjct:    1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSIT 340          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 2.410e-88
Identity = 159/340 (46.76%), Postives = 214/340 (62.94%), Query Frame = 1
Query:  298 LCDELVQDLAAFATLVFS-SRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERLGIEG--------------GVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSHLLRTAPPSIT 1272
            + D   + LA F+  VF     LP   W LHT+ANLSALG+K RP+A G VLRR+I   F R+Y   +A+ F++  Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A + P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K+F   P VPG + + ++DD+   LPP L+ ++ AI+ VT W+QERL  +G              G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+     G+PAEL+  L  ++D QAS+Q+LRLS   RL HLLRT  PSIT
Sbjct:    1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 340          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.210e-46
Identity = 137/455 (30.11%), Postives = 220/455 (48.35%), Query Frame = 1
Query:    1 DTPEARRVRASKLAHQRGGITKAASALISPPAAPQDSRTLATLRSKHPTEDPEAIATGKAQA------ERRAG----------ITAVTVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVQD------LAAFATLVFSSRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERLGI------EGGVGP--EQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVP-MEDAQASFQILRLSATSRLSHLLRTAPPSIT 1272
            +T E +  RA +     GG+  AA AL++ P +P +  T   L++K P ED  A+    A A      E   G               +  VI   +  S AG  G R+SHL++    ++ ++       + +  LV      P  FWTL   ++L ALG+K RPV  G   RR+I A   R++  KL + F+   Q+GVAV+GGVE +A+ A L  + G  I+  D +NAFN+  R   +   A+ +P +V Y +  Y   P   ++ +D G    +E   GVQQG  +GP  +S   + I+   +      G    +++DDIT+ L       + A+  + + L E +GI         + P    +T++QR  ++  GLTV  +G+ VVGVP+GT+ + R+F    +    AE +  ++P M D Q +  I  LS   R +++ R   P++T
Sbjct:  455 ETQEDKFKRAEQACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAE-VGIVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLT 908          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.670e-45
Identity = 135/448 (30.13%), Postives = 215/448 (47.99%), Query Frame = 1
Query:    1 DTPEARRVRASKLAHQRGGITKAASALISPPAAPQDSRTLATLRSKHPTEDP--------EAIATGKAQAERRAG--------ITAVTVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVQD------LAAFATLVFSSRVLPQVFWTLHTTANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERLGIEGGVGPEQ--------LTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVN-GEPAELVRALVPMEDAQASFQILRLSATSRLSHLLR 1251
            DTP+ +  RA++     GG+  AA AL++   +P +  T A L++K P EDP        EAIA  + + E  +              +  VI   +  S AG  G R+SHL++ +  ++ ++       + +  L+      P  FWTL   ++L ALG+K RPV  G   RR+I A   R +  KL + F+   Q+GVAV+GGVE +A+ A L  + G  ++  D +NAFN+  R   +   A+ VP +V Y +  Y   P K ++A+D G    +E   GVQQG  +GP  +    + I+   RA     G    +++DDI++      + +I  I  + + L E +GI    G           +T  +R  +   GL +  +G+ VVGVP+GT+ +  D     +  G   +L R LV M D Q +  +   S T R  ++ R
Sbjct:  285 DTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDEL-EAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 731          
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 9.660e-45
Identity = 92/191 (48.17%), Postives = 121/191 (63.35%), Query Frame = 1
Query:  742 LDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFIDDITVILPPELSLDIAAIAKVTEWLQERL---GIEGGVG------PE-----QLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSHLLRTAPPSIT 1272
            ++ G  E+V S RGVQQGCNLG   +S G L  +K+F   P VPGA+ + ++DD+ V LPP L+ +I AIA VT W+Q+ L   GIE  +       PE      LT +++  +  TGL+V   GM +VGVPVGTE FQR F+ +   G PAEL+R L  ++D QAS+Q+LRLS   RL HLLRT  PSIT
Sbjct:    1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 191          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102223.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGJ4_9PHAE7.650e-12448.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE2.370e-12147.26Reverse transcriptase domain-containing protein (F... [more]
A0A6P0N5L4_9CYAN2.150e-12047.19Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5LN63_9PHAE2.680e-11947.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE1.080e-9548.43Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KSY9_9PHAE3.720e-9347.94Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1H0_9PHAE2.410e-8846.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE3.210e-4630.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE1.670e-4530.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K541_9PHAE9.660e-4548.17Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102223contigF-distichus_contig102223:236..1645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue7e-16
Seed eggNOG ortholog400682.PAC_15702057
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1278
Cds size1278
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102223.193.1prot_F-distichus_contig102223.193.1Fucus distichus monoicouspolypeptideF-distichus_contig102223 236..1645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.2287045-CDS-F-distichus_contig102223:235..5191622928937.2287045-CDS-F-distichus_contig102223:235..519Fucus distichus monoicousCDSF-distichus_contig102223 236..519 -
1690885074.724054-CDS-F-distichus_contig102223:235..5191690885074.724054-CDS-F-distichus_contig102223:235..519Fucus distichus monoicousCDSF-distichus_contig102223 236..519 -
1622928937.246596-CDS-F-distichus_contig102223:561..13451622928937.246596-CDS-F-distichus_contig102223:561..1345Fucus distichus monoicousCDSF-distichus_contig102223 562..1345 -
1690885074.7349977-CDS-F-distichus_contig102223:561..13451690885074.7349977-CDS-F-distichus_contig102223:561..1345Fucus distichus monoicousCDSF-distichus_contig102223 562..1345 -
1622928937.2760322-CDS-F-distichus_contig102223:1435..16451622928937.2760322-CDS-F-distichus_contig102223:1435..1645Fucus distichus monoicousCDSF-distichus_contig102223 1436..1645 -
1690885074.7458005-CDS-F-distichus_contig102223:1435..16451690885074.7458005-CDS-F-distichus_contig102223:1435..1645Fucus distichus monoicousCDSF-distichus_contig102223 1436..1645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102223.193.1

>prot_F-distichus_contig102223.193.1 ID=prot_F-distichus_contig102223.193.1|Name=mRNA_F-distichus_contig102223.193.1|organism=Fucus distichus monoicous|type=polypeptide|length=426bp
DTPEARRVRASKLAHQRGGITKAASALISPPAAPQDSRTLATLRSKHPTE
DPEAIATGKAQAERRAGITAVTVKAVIKKANPQSAAGPSGLRYSHLQAAL
CDELVQDLAAFATLVFSSRVLPQVFWTLHTTANLSALGQKARPVACGDVL
RRVIGAVFCRRYGRKLADYFQSWGQYGVAVSGGVEIMALTATLEFEEGCT
ILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDG
GGSEVVESARGVQQGCNLGPLCYSAGSLKILKDFRANPLVPGARAVSFID
DITVILPPELSLDIAAIAKVTEWLQERLGIEGGVGPEQLTEEQRVAMDTT
GLTVVRQGMRVVGVPVGTEQFQRDFLQDAVNGEPAELVRALVPMEDAQAS
FQILRLSATSRLSHLLRTAPPSITG*
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mRNA from alignment at F-distichus_contig102223:236..1645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102223.193.1 ID=mRNA_F-distichus_contig102223.193.1|Name=mRNA_F-distichus_contig102223.193.1|organism=Fucus distichus monoicous|type=mRNA|length=1410bp|location=Sequence derived from alignment at F-distichus_contig102223:236..1645- (Fucus distichus monoicous)
GATACACCCGAAGCTCGCCGAGTACGAGCGAGTAAGCTAGCACATCAGCG AGGAGGCATCACCAAGGCCGCGAGCGCCCTTATCTCTCCCCCAGCAGCGC CTCAAGACAGTAGAACACTGGCAACGCTACGCAGCAAGCACCCCACAGAG GACCCCGAAGCGATTGCAACAGGTAAAGCGCAGGCGGAACGGCGTGCAGG CATTACAGCAGTTGGTGAGCAGGAGCAATAGCCGAACGTGGCATCCGAGC CGTTGGATACACAAGGTCAGATCTCGGAGATGGAGAACCTCTTCGAGGAG GTCACGGTAAAAGCTGTAATCAAGAAAGCCAACCCACAAAGCGCAGCAGG TCCGTCTGGACTACGCTACAGCCATCTGCAGGCTGCGCTATGCGATGAAC TGGTCCAGGACCTCGCGGCGTTCGCGACGCTTGTTTTTTCCAGTCGTGTT TTGCCTCAAGTATTCTGGACACTGCACACGACCGCCAACCTTTCCGCGTT GGGGCAGAAGGCGAGACCAGTGGCGTGCGGCGATGTCTTGCGAAGAGTTA TTGGCGCTGTTTTCTGCCGCCGATACGGCAGGAAGCTGGCAGACTACTTC CAGTCCTGGGGCCAGTACGGCGTAGCAGTTTCAGGTGGAGTAGAGATAAT GGCGCTCACGGCGACACTTGAATTCGAAGAGGGTTGCACTATTCTCTCAT ACGACGGAGCAAACGCCTTTAACAGCATATACCGCCACAGGTTCCTGCCC GCGCTAGCCGAAATCGTTCCCTCAGTGGTCCCGTACGCATCAAACCTGTA TGCACGGGAACCCCCCAAACTTCTGTTTGCACTAGACGGTGGAGGTTCGG AAGTGGTCGAGTCAGCGCGGGGAGTGCAGCAAGGATGTAATCTAGGTCCA CTTTGCTACAGCGCAGGTTCACTAAAGATCCTAAAAGATTTCAGAGCCAA TCCACTGGTGCCAGGAGCGAGAGCGGTTTCGTTCATCGACGACATCACGG TCATTCTACCACCGGAGCTTTCTCTCGATATTGCAGCTATAGCAAAAGTT ACTGAATGGCTGCAGGAACGCCTGGGGATAGAAGGTATCTCGCTGAACCG AAGGAAATCGTAGGCCCTGCTAGCAGGTGGAGTGGGGCCAGAACAACTGA CGGAAGAGCAGCGAGTGGCAATGGATACTACAGGGCTCACGGTGGTCCGA CAGGGGATGAGGGTTGTGGGAGTACCAGTTGGAACAGAACAGTTCCAGCG CGATTTCTTGCAAGATGCGGTTAACGGAGAGCCAGCTGAGCTCGTGAGGG CGCTGGTCCCAATGGAGGATGCCCAAGCGAGCTTCCAGATTTTGCGTCTA TCTGCCACTTCTCGCCTCTCGCATCTGCTCCGAACAGCCCCACCCTCCAT AACAGGCTAA
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Coding sequence (CDS) from alignment at F-distichus_contig102223:236..1645-

>mRNA_F-distichus_contig102223.193.1 ID=mRNA_F-distichus_contig102223.193.1|Name=mRNA_F-distichus_contig102223.193.1|organism=Fucus distichus monoicous|type=CDS|length=2556bp|location=Sequence derived from alignment at F-distichus_contig102223:236..1645- (Fucus distichus monoicous)
GATACACCCGAAGCTCGCCGAGTACGAGCGAGTAAGCTAGCACATCAGCG
AGGAGGCATCACCAAGGCCGCGAGCGCCCTTATCTCTCCCCCAGCAGCGC
CTCAAGACAGTAGAACACTGGCAACGCTACGCAGCAAGCACCCCACAGAG
GACCCCGAAGCGATTGCAACAGGTAAAGCGCAGGCGGAACGGCGTGCAGG
CATTACAGCAGATACACCCGAAGCTCGCCGAGTACGAGCGAGTAAGCTAG
CACATCAGCGAGGAGGCATCACCAAGGCCGCGAGCGCCCTTATCTCTCCC
CCAGCAGCGCCTCAAGACAGTAGAACACTGGCAACGCTACGCAGCAAGCA
CCCCACAGAGGACCCCGAAGCGATTGCAACAGGTAAAGCGCAGGCGGAAC
GGCGTGCAGGCATTACAGCAGTCACGGTAAAAGCTGTAATCAAGAAAGCC
AACCCACAAAGCGCAGCAGGTCCGTCTGGACTACGCTACAGCCATCTGCA
GGCTGCGCTATGCGATGAACTGGTCCAGGACCTCGCGGCGTTCGCGACGC
TTGTTTTTTCCAGTCGTGTTTTGCCTCAAGTATTCTGGACACTGCACACG
ACCGCCAACCTTTCCGCGTTGGGGCAGAAGGCGAGACCAGTGGCGTGCGG
CGATGTCTTGCGAAGAGTTATTGGCGCTGTTTTCTGCCGCCGATACGGCA
GGAAGCTGGCAGACTACTTCCAGTCCTGGGGCCAGTACGGCGTAGCAGTT
TCAGGTGGAGTAGAGATAATGGCGCTCACGGCGACACTTGAATTCGAAGA
GGGTTGCACTATTCTCTCATACGACGGAGCAAACGCCTTTAACAGCATAT
ACCGCCACAGGTTCCTGCCCGCGCTAGCCGAAATCGTTCCCTCAGTGGTC
CCGTACGCATCAAACCTGTATGCACGGGAACCCCCCAAACTTCTGTTTGC
ACTAGACGGTGGAGGTTCGGAAGTGGTCGAGTCAGCGCGGGGAGTGCAGC
AAGGATGTAATCTAGGTCCACTTTGCTACAGCGCAGGTTCACTAAAGATC
CTAAAAGATTTCAGAGCCAATCCACTGGTGCCAGGAGCGAGAGCGGTTTC
GTTCATCGACGACATCACGGTCATTCTACCACCGGAGCTTTCTCTCGATA
TTGCAGCTATAGCAAAAGTTACTGAATGGCTGCAGGAACGCCTGGGGATA
GAAGGTCACGGTAAAAGCTGTAATCAAGAAAGCCAACCCACAAAGCGCAG
CAGGTCCGTCTGGACTACGCTACAGCCATCTGCAGGCTGCGCTATGCGAT
GAACTGGTCCAGGACCTCGCGGCGTTCGCGACGCTTGTTTTTTCCAGTCG
TGTTTTGCCTCAAGTATTCTGGACACTGCACACGACCGCCAACCTTTCCG
CGTTGGGGCAGAAGGCGAGACCAGTGGCGTGCGGCGATGTCTTGCGAAGA
GTTATTGGCGCTGTTTTCTGCCGCCGATACGGCAGGAAGCTGGCAGACTA
CTTCCAGTCCTGGGGCCAGTACGGCGTAGCAGTTTCAGGTGGAGTAGAGA
TAATGGCGCTCACGGCGACACTTGAATTCGAAGAGGGTTGCACTATTCTC
TCATACGACGGAGCAAACGCCTTTAACAGCATATACCGCCACAGGTTCCT
GCCCGCGCTAGCCGAAATCGTTCCCTCAGTGGTCCCGTACGCATCAAACC
TGTATGCACGGGAACCCCCCAAACTTCTGTTTGCACTAGACGGTGGAGGT
TCGGAAGTGGTCGAGTCAGCGCGGGGAGTGCAGCAAGGATGTAATCTAGG
TCCACTTTGCTACAGCGCAGGTTCACTAAAGATCCTAAAAGATTTCAGAG
CCAATCCACTGGTGCCAGGAGCGAGAGCGGTTTCGTTCATCGACGACATC
ACGGTCATTCTACCACCGGAGCTTTCTCTCGATATTGCAGCTATAGCAAA
AGTTACTGAATGGCTGCAGGAACGCCTGGGGATAGAAGGTGGAGTGGGGC
CAGAACAACTGACGGAAGAGCAGCGAGTGGCAATGGATACTACAGGGCTC
ACGGTGGTCCGACAGGGGATGAGGGTTGTGGGAGTACCAGTTGGAACAGA
ACAGTTCCAGCGCGATTTCTTGCAAGATGCGGTTAACGGAGAGCCAGCTG
AGCTCGTGAGGGCGCTGGTCCCAATGGAGGATGCCCAAGCGAGCTTCCAG
ATTTTGCGTCTATCTGCCACTTCTCGCCTCTCGCATCTGCTCCGAACAGC
CCCACCCTCCATAACAGGCTAAGTGGAGTGGGGCCAGAACAACTGACGGA
AGAGCAGCGAGTGGCAATGGATACTACAGGGCTCACGGTGGTCCGACAGG
GGATGAGGGTTGTGGGAGTACCAGTTGGAACAGAACAGTTCCAGCGCGAT
TTCTTGCAAGATGCGGTTAACGGAGAGCCAGCTGAGCTCGTGAGGGCGCT
GGTCCCAATGGAGGATGCCCAAGCGAGCTTCCAGATTTTGCGTCTATCTG
CCACTTCTCGCCTCTCGCATCTGCTCCGAACAGCCCCACCCTCCATAACA
GGCTAA
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