mRNA_F-distichus_contig1022.191.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1022.191.1
Unique NamemRNA_F-distichus_contig1022.191.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1022.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1022contigF-distichus_contig1022:9410..11380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1608
Cds size1257
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1022.191.1prot_F-distichus_contig1022.191.1Fucus distichus monoicouspolypeptideF-distichus_contig1022 9537..11156 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.899657-UTR-F-distichus_contig1022:9409..95361622928936.899657-UTR-F-distichus_contig1022:9409..9536Fucus distichus monoicousUTRF-distichus_contig1022 9410..9536 -
1690885074.529005-UTR-F-distichus_contig1022:9409..95361690885074.529005-UTR-F-distichus_contig1022:9409..9536Fucus distichus monoicousUTRF-distichus_contig1022 9410..9536 -
1622928936.9621153-UTR-F-distichus_contig1022:11156..113801622928936.9621153-UTR-F-distichus_contig1022:11156..11380Fucus distichus monoicousUTRF-distichus_contig1022 11157..11380 -
1690885074.586917-UTR-F-distichus_contig1022:11156..113801690885074.586917-UTR-F-distichus_contig1022:11156..11380Fucus distichus monoicousUTRF-distichus_contig1022 11157..11380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.914184-CDS-F-distichus_contig1022:9536..104611622928936.914184-CDS-F-distichus_contig1022:9536..10461Fucus distichus monoicousCDSF-distichus_contig1022 9537..10461 -
1690885074.5388355-CDS-F-distichus_contig1022:9536..104611690885074.5388355-CDS-F-distichus_contig1022:9536..10461Fucus distichus monoicousCDSF-distichus_contig1022 9537..10461 -
1622928936.9256532-CDS-F-distichus_contig1022:10623..109201622928936.9256532-CDS-F-distichus_contig1022:10623..10920Fucus distichus monoicousCDSF-distichus_contig1022 10624..10920 -
1690885074.5564027-CDS-F-distichus_contig1022:10623..109201690885074.5564027-CDS-F-distichus_contig1022:10623..10920Fucus distichus monoicousCDSF-distichus_contig1022 10624..10920 -
1622928936.94512-CDS-F-distichus_contig1022:11121..111561622928936.94512-CDS-F-distichus_contig1022:11121..11156Fucus distichus monoicousCDSF-distichus_contig1022 11122..11156 -
1690885074.5735624-CDS-F-distichus_contig1022:11121..111561690885074.5735624-CDS-F-distichus_contig1022:11121..11156Fucus distichus monoicousCDSF-distichus_contig1022 11122..11156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1022.191.1

>prot_F-distichus_contig1022.191.1 ID=prot_F-distichus_contig1022.191.1|Name=mRNA_F-distichus_contig1022.191.1|organism=Fucus distichus monoicous|type=polypeptide|length=419bp
MRVSENVVLRQRRAWVHSPCFVKMIGTSTYDYFFSVQELGDLLDMPCSEI
RAILQPRYRAGHPEFLRSFGITSRLFDGRQMYCLLGEGSLVSMGGGDCID
LINAEPNPMYWRATKWEISKSNTNFAGLEISAVVNLTSEVQESLHCRSCG
RSVAAGDWAWQRLESKLHAILNPDRVVQLGVKFRCISCKAIHLAVPLPCH
KGRGDGSVWARGDPAVDVIVSNLPSWNGSKGQAPGEVSNYDAKNKKHRKT
EKEFTATIEPPQDKQRQSGKSKACLAAGVSEMFLVARKHEMKTENKCCEV
QVAWTCEQAAVPAAAANVVTAKAPIGAAAAAQAKTPRGVAEGQGFKAPNG
VAAAAQAKAPRGAARGQAESPRGSAGDQSKATNGAPAEAQEEMSSEAAAG
GPLSRYGRVRKRKMLADM*
back to top

mRNA from alignment at F-distichus_contig1022:9410..11380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1022.191.1 ID=mRNA_F-distichus_contig1022.191.1|Name=mRNA_F-distichus_contig1022.191.1|organism=Fucus distichus monoicous|type=mRNA|length=1971bp|location=Sequence derived from alignment at F-distichus_contig1022:9410..11380- (Fucus distichus monoicous)
GGGTGTGGTGGTTCGCGTTTGTGGGGGAAGGCGGGGCAAAACCGCGGTTC
GATATCCGTGAGCGGGAGCACCTTTTCGTGGAGACGGACCCGGTCGAGAA
ACCCGCGGCACAAGGTGCTCCTCGACGGCGCCCGTTAGAAGGAACAGCAC
TCCAAAGAGCAGCGTGTGAAGCAGAGGATATTTCGGCAGATGCTCCCCGT
GAAAAAAGCGGCCAAGAAGAGCACATGCGTGTGTCTGAAAATGTGGTCCT
TCGACAAAGGTGAATGTGCAGCAGTTGCTCGTACGCGAAAGATTCACATC
CAAGTGTCGTTAGTAACATCATTAACATTATTAGCAAGTTACAGATCTTT
TGTATGGATCTCGAATTTCGGTCCAATCTACCTTGATTGCTTCAACAACA
AGATATGCACATACATGCACCCTCACGCATGTCTCCGTTGGCGTCTTTGT
CCCTCGTCAGGAGGGCATGGGTCCATAGCCCATGCTTTGTAAAGATGATC
GGGACAAGCACGTACGACTACTTCTTCAGCGTGCAGGAGCTCGGAGATCT
TCTCGACATGCCGTGCTCGGAAATCCGGGCGATTTTGCAACCCAGGTATC
GAGCTGGCCACCCCGAATTCCTCCGCAGTTTTGGCATCACGAGCCGCTTG
TTCGATGGGCGTCAAATGTACTGTCTTCTAGGAGAAGGCAGCCTTGTTTC
GATGGGAGGAGGGGACTGCATCGACCTCATCAACGCCGAGCCTAATCCGA
TGTACTGGTGAGCACAACCACAAAAGTCCAATACTCACCCGACCCCTTGA
AGGAGGGATACCGGTAGTCATTTAGTCAAAAGTCGACAGTGATTCTCAAA
TCTTATAATAAAAGTCTTCATTATAGACGACCTTGCAATGTACGCTACGT
CAAACTCAATGTCTCACAGGCGAGCTACGAAGTGGGAGATTTCCAAAAGC
AACACAAATTTCGCTGGGCTTGAAATCTCTGCAGTGGTCAACCTGACCAG
TGAAGTACAGGAGTCGCTGCACTGCCGGTCCTGCGGTCGATCTGTGGCGG
CAGGAGACTGGGCTTGGCAACGTTTGGAGTCGAAACTGCATGCGATCCTC
AACCCAGATAGGGTTGTTCAGCTTGGGGTTAAGTTCAGGTGTATTTCTTG
CAAGGCGATTCATCTTGCGGTACCCTTACCGTGCCACAAAGGCCGGGGTG
ATGGGTCCGTGTGGGCGCGTGGGGACCCTGCCGTGGACGTAATCGTAAGC
AATCTACCTAGTTGGAACGGGAGCAAAGGGCAGGCACCCGGCGAGGTATC
CAACTATGACGCAAAAAATAAAAAGCACAGGAAGACGGAGAAGGAGTTCA
CGGCGACCATTGAACCCCCGCAAGACAAACAACGCCAGAGCGGCAAGTCC
AAGGCATGCCTTGCAGCCGGTGTATCGGAAATGTTCCTAGTGGCAAGAAA
ACATGAAATGAAGACTGAAAACAAATGTTGTGAGGTACAAGTTGCCTGGA
CGTGTGAGCAGGCCGCCGTGCCGGCGGCGGCGGCTAATGTCGTTACGGCG
AAGGCACCGATAGGCGCCGCCGCCGCCGCACAGGCAAAGACACCTCGAGG
GGTAGCGGAAGGACAGGGATTTAAGGCGCCGAATGGCGTGGCGGCCGCAG
CACAGGCAAAAGCGCCACGAGGGGCGGCCAGGGGACAGGCGGAGAGTCCT
AGAGGGTCGGCTGGAGACCAATCGAAAGCAACAAACGGCGCGCCGGCCGA
AGCACAGGAAGAGATGTCGAGCGAGGCGGCCGCGGGAGGTCCACTGTCCA
GATATGGGAGGGTAAGAAAAAGGAAGATGCTGGCGGACATGTAAATGTGG
TGGAGGATGAGCGGCGACGCCTCGGGTTTGGGGGGGGCATTCTCTACTCA
CGGCGGCGGCGCTTTCGGTATGCATATCAGGGATACGGGGGGGCGATCAT
GCGGGACCTTTTTATTTGGTG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig1022:9410..11380-

>mRNA_F-distichus_contig1022.191.1 ID=mRNA_F-distichus_contig1022.191.1|Name=mRNA_F-distichus_contig1022.191.1|organism=Fucus distichus monoicous|type=CDS|length=2514bp|location=Sequence derived from alignment at F-distichus_contig1022:9410..11380- (Fucus distichus monoicous)
ATGCGTGTGTCTGAAAATGTGGTCCTTCGACAAAGATGCGTGTGTCTGAA
AATGTGGTCCTTCGACAAAGGAGGGCATGGGTCCATAGCCCATGCTTTGT
AAAGATGATCGGGACAAGCACGTACGACTACTTCTTCAGCGTGCAGGAGC
TCGGAGATCTTCTCGACATGCCGTGCTCGGAAATCCGGGCGATTTTGCAA
CCCAGGTATCGAGCTGGCCACCCCGAATTCCTCCGCAGTTTTGGCATCAC
GAGCCGCTTGTTCGATGGGCGTCAAATGTACTGTCTTCTAGGAGAAGGCA
GCCTTGTTTCGATGGGAGGAGGGGACTGCATCGACCTCATCAACGCCGAG
CCTAATCCGATGTACTGGAGGGCATGGGTCCATAGCCCATGCTTTGTAAA
GATGATCGGGACAAGCACGTACGACTACTTCTTCAGCGTGCAGGAGCTCG
GAGATCTTCTCGACATGCCGTGCTCGGAAATCCGGGCGATTTTGCAACCC
AGGTATCGAGCTGGCCACCCCGAATTCCTCCGCAGTTTTGGCATCACGAG
CCGCTTGTTCGATGGGCGTCAAATGTACTGTCTTCTAGGAGAAGGCAGCC
TTGTTTCGATGGGAGGAGGGGACTGCATCGACCTCATCAACGCCGAGCCT
AATCCGATGTACTGGCGAGCTACGAAGTGGGAGATTTCCAAAAGCAACAC
AAATTTCGCTGGGCTTGAAATCTCTGCAGTGGTCAACCTGACCAGTGAAG
TACAGGAGTCGCTGCACTGCCGGTCCTGCGGTCGATCTGTGGCGGCAGGA
GACTGGGCTTGGCAACGTTTGGAGTCGAAACTGCATGCGATCCTCAACCC
AGATAGGGTTGTTCAGCTTGGGGTTAAGTTCAGGTGTATTTCTTGCAAGG
CGATTCATCTTGCGGTACCCTTACCGTGCCACAAAGGCCGGGGTGATGGG
TCCGTGTGGGCGCGTGGGGACCCTGCCGTGGACGTAATCGTAAGCAATCT
ACCTAGTTGGAACGGGAGCAAAGGGCAGGCACCCGGCGAGGTATCCAACT
ATGACGCAAAAAATAAAAAGCACAGGAAGACGGAGAAGGAGTTCACGGCG
ACCATTGAACCCCCGCAAGACAAACAACGCCAGAGCGGCAAGTCCAAGGC
ATGCCTTGCAGCCGGTGTATCGGAAATGTTCCTAGTGGCAAGAAAACATG
AAATGAAGACTGAAAACAAATGTTGTGAGGTACAAGTTGCCTGGACGTGT
GAGCAGGCCGCCGTGCCGGCGGCGGCGGCTAATGTCGTTACGGCGAAGGC
ACCGATAGGCGCCGCCGCCGCCGCACAGGCAAAGACACCTCGAGGGGTAG
CGGAAGGACAGGGATTTAAGGCGCCGAATGGCGTGGCGGCCGCAGCACAG
GCAAAAGCGCCACGAGGGGCGGCCAGGGGACAGGCGGAGAGTCCTAGAGG
GTCGGCTGGAGACCAATCGAAAGCAACAAACGGCGCGCCGGCCGAAGCAC
AGGAAGAGATGTCGAGCGAGGCGGCCGCGGGAGGTCCACTGTCCAGATAT
GGGAGGGTAAGAAAAAGGAAGATGCTGGCGGACATGTAAGCGAGCTACGA
AGTGGGAGATTTCCAAAAGCAACACAAATTTCGCTGGGCTTGAAATCTCT
GCAGTGGTCAACCTGACCAGTGAAGTACAGGAGTCGCTGCACTGCCGGTC
CTGCGGTCGATCTGTGGCGGCAGGAGACTGGGCTTGGCAACGTTTGGAGT
CGAAACTGCATGCGATCCTCAACCCAGATAGGGTTGTTCAGCTTGGGGTT
AAGTTCAGGTGTATTTCTTGCAAGGCGATTCATCTTGCGGTACCCTTACC
GTGCCACAAAGGCCGGGGTGATGGGTCCGTGTGGGCGCGTGGGGACCCTG
CCGTGGACGTAATCGTAAGCAATCTACCTAGTTGGAACGGGAGCAAAGGG
CAGGCACCCGGCGAGGTATCCAACTATGACGCAAAAAATAAAAAGCACAG
GAAGACGGAGAAGGAGTTCACGGCGACCATTGAACCCCCGCAAGACAAAC
AACGCCAGAGCGGCAAGTCCAAGGCATGCCTTGCAGCCGGTGTATCGGAA
ATGTTCCTAGTGGCAAGAAAACATGAAATGAAGACTGAAAACAAATGTTG
TGAGGTACAAGTTGCCTGGACGTGTGAGCAGGCCGCCGTGCCGGCGGCGG
CGGCTAATGTCGTTACGGCGAAGGCACCGATAGGCGCCGCCGCCGCCGCA
CAGGCAAAGACACCTCGAGGGGTAGCGGAAGGACAGGGATTTAAGGCGCC
GAATGGCGTGGCGGCCGCAGCACAGGCAAAAGCGCCACGAGGGGCGGCCA
GGGGACAGGCGGAGAGTCCTAGAGGGTCGGCTGGAGACCAATCGAAAGCA
ACAAACGGCGCGCCGGCCGAAGCACAGGAAGAGATGTCGAGCGAGGCGGC
CGCGGGAGGTCCACTGTCCAGATATGGGAGGGTAAGAAAAAGGAAGATGC
TGGCGGACATGTAA
back to top