mRNA_F-distichus_contig102183.189.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102183.189.1
Unique NamemRNA_F-distichus_contig102183.189.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102183.189.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.690e-27
Identity = 82/158 (51.90%), Postives = 104/158 (65.82%), Query Frame = 1 
Query:  637 SLIGSLTITSDEPPACAATNTCEDVAQDALEGSLGRNNGTLNVTSVTVTTSPA--DDSRRLLLVTGLSSPPRSSVVRTGSFLRASTPRQRQLQSTGASETETDVEFISAPVDSSDLTEAQQAAEQINALADGGIADLLEMLELPSDSEVDTEGMKYVE 1104
            SLIGS+TI SDE P CA    CE+V +D LE SLGRN GT+NVT VTVT++ A  D  RR+LL          S       LR S  RQ Q +    ++TET++E+ S+P  SS+LTEAQQAAEQINALA+ GIADLL+ + LP D+EV+    K+V+
Sbjct:  586 SLIGSITIISDEAPECAGAGNCEEVVEDGLESSLGRN-GTVNVTDVTVTSTAAAADAGRRVLLFVADGDVADDSSR--NRLLRGS--RQLQEEEAAGNQTETEIEYESSPDQSSNLTEAQQAAEQINALAETGIADLLDEMGLPPDTEVEIGVTKFVQ 738
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BLAST of mRNA_F-distichus_contig102183.189.1 vs. uniprot
Match: D8LBV2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV2_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.260e-26
Identity = 83/159 (52.20%), Postives = 107/159 (67.30%), Query Frame = 1 
Query:  637 SLIGSLTITSDEPPACAATNTCEDVAQDALEGSLGRNNGTLNVTSVTVTTSPA--DDSRRLLL-VTGLSSPPRSSVVRTGSFLRASTPRQRQLQSTGASETETDVEFISAPVDSSDLTEAQQAAEQINALADGGIADLLEMLELPSDSEVDTEGMKYVE 1104
            SLIGS+TI SDE P C     CE+V +D LE SLGRN GT+NVT VTVT++ A  D  RR+LL V        SS  R    LR S   Q + ++ G ++TET++E+ S+P  SS+LTEAQQAAEQINALA+ GIADLL+ + LP D+EV+    K+V+
Sbjct:  594 SLIGSITIISDEEPECEGAGNCEEVVEDGLESSLGRN-GTVNVTDVTVTSTAAAADAGRRVLLFVADGDVADNSSRNR---LLRGSRQLQEEEEAAG-NQTETEIEYESSPDQSSNLTEAQQAAEQINALAETGIADLLDEMGLPPDTEVELGVTKFVQ 747
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102183.189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWL3_9PHAE1.690e-2751.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV2_ECTSI1.260e-2652.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102183contigF-distichus_contig102183:331..1449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002580.1
Exons1
Model size1119
Cds size1119
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.8562315-CDS-F-distichus_contig102183:330..14491622928936.8562315-CDS-F-distichus_contig102183:330..1449Fucus distichus monoicousCDSF-distichus_contig102183 331..1449 -
1690885074.518379-CDS-F-distichus_contig102183:330..14491690885074.518379-CDS-F-distichus_contig102183:330..1449Fucus distichus monoicousCDSF-distichus_contig102183 331..1449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102183.189.1prot_F-distichus_contig102183.189.1Fucus distichus monoicouspolypeptideF-distichus_contig102183 331..1449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102183.189.1

>prot_F-distichus_contig102183.189.1 ID=prot_F-distichus_contig102183.189.1|Name=mRNA_F-distichus_contig102183.189.1|organism=Fucus distichus monoicous|type=polypeptide|length=373bp
PETRETPSPAGTVAPAATAAPAATGAPAETTAPATTAAPGATTGPGATLS
PSLTSAPAISLAPSATLAPGETKTPAMSLAPASTLAPDATFAPGATLPPA
VRTVAPGATVAPDTTLAPGTTSAPGTLAPGATLAPGATLAPGATLTPTLP
SISPTIFTSTPSVMRSTAPTGAPTGTPTEMGTGMPTATPTGIPSDPPTRA
PTASPTAAPTGMSLIGSLTITSDEPPACAATNTCEDVAQDALEGSLGRNN
GTLNVTSVTVTTSPADDSRRLLLVTGLSSPPRSSVVRTGSFLRASTPRQR
QLQSTGASETETDVEFISAPVDSSDLTEAQQAAEQINALADGGIADLLEM
LELPSDSEVDTEGMKYVECNIF*
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mRNA from alignment at F-distichus_contig102183:331..1449-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102183.189.1 ID=mRNA_F-distichus_contig102183.189.1|Name=mRNA_F-distichus_contig102183.189.1|organism=Fucus distichus monoicous|type=mRNA|length=1119bp|location=Sequence derived from alignment at F-distichus_contig102183:331..1449- (Fucus distichus monoicous)
CCCGAGACGCGAGAAACTCCTTCCCCAGCCGGGACTGTAGCGCCTGCCGC
GACCGCGGCACCAGCCGCTACCGGGGCTCCTGCTGAAACCACGGCACCTG
CGACGACCGCTGCGCCGGGGGCCACCACAGGTCCAGGAGCCACCCTGTCA
CCTTCGCTCACGTCGGCGCCCGCTATAAGTCTTGCCCCTTCGGCCACTCT
GGCACCTGGAGAGACTAAGACTCCGGCGATGTCTCTGGCACCAGCATCGA
CTTTAGCCCCCGATGCCACTTTCGCTCCAGGGGCGACTCTGCCGCCTGCG
GTGAGGACAGTGGCACCCGGCGCGACTGTGGCACCTGATACGACGTTGGC
ACCGGGGACAACATCGGCACCCGGAACCCTTGCGCCAGGGGCGACTCTGG
CGCCCGGAGCGACTCTGGCACCCGGGGCTACCCTGACCCCCACCTTGCCT
TCTATATCCCCAACCATTTTCACAAGTACACCGTCAGTGATGCGTAGCAC
AGCGCCAACTGGAGCCCCGACAGGAACGCCGACTGAAATGGGGACCGGAA
TGCCAACCGCGACGCCCACGGGGATACCGAGCGATCCCCCCACGAGAGCG
CCGACCGCGTCTCCTACCGCAGCTCCGACCGGGATGTCGCTAATCGGCAG
CCTGACAATCACCTCGGACGAGCCGCCCGCCTGCGCCGCGACCAACACCT
GCGAAGACGTGGCGCAGGACGCCCTGGAAGGGTCGCTCGGCCGCAACAAC
GGTACCTTGAACGTCACGTCCGTTACAGTCACTACAAGCCCCGCCGATGA
CAGCCGCAGGTTGCTCTTGGTTACGGGGTTATCATCGCCACCACGATCAT
CTGTCGTTCGAACCGGCAGTTTTCTCCGCGCGTCGACCCCGAGACAGAGA
CAGCTGCAGAGCACCGGAGCGAGCGAGACGGAGACCGATGTCGAGTTTAT
TTCCGCGCCGGTAGATTCTTCTGACCTCACCGAGGCGCAACAGGCTGCGG
AGCAAATTAATGCTCTGGCGGACGGGGGGATCGCTGACTTGCTAGAGATG
CTCGAGCTGCCGTCGGATTCGGAAGTCGACACCGAGGGCATGAAATACGT
CGAATGTAATATATTTTAG
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Coding sequence (CDS) from alignment at F-distichus_contig102183:331..1449-

>mRNA_F-distichus_contig102183.189.1 ID=mRNA_F-distichus_contig102183.189.1|Name=mRNA_F-distichus_contig102183.189.1|organism=Fucus distichus monoicous|type=CDS|length=2238bp|location=Sequence derived from alignment at F-distichus_contig102183:331..1449- (Fucus distichus monoicous)
CCCGAGACGCGAGAAACTCCTTCCCCAGCCGGGACTGTAGCGCCTGCCGC
GACCGCGGCACCAGCCGCTACCGGGGCTCCTGCTGAAACCACGGCACCTG
CGACGACCGCTGCGCCGGGGGCCACCACAGGTCCAGGAGCCACCCTGTCA
CCTTCGCTCACGTCGGCGCCCGCTATAAGTCTTGCCCCTTCGGCCACTCT
GGCACCTGGAGAGACTAAGACTCCGGCGATGTCTCTGGCACCAGCATCGA
CTTTAGCCCCCGATGCCACTTTCGCTCCAGGGGCGACTCTGCCGCCTGCG
GTGAGGACAGTGGCACCCGGCGCGACTGTGGCACCTGATACGACGTTGGC
ACCGGGGACAACATCGGCACCCGGAACCCTTGCGCCAGGGGCGACTCTGG
CGCCCGGAGCGACTCTGGCACCCGGGGCTACCCTGACCCCCACCTTGCCT
TCTATATCCCCAACCATTTTCACAAGTACACCGTCAGTGATGCGTAGCAC
AGCGCCAACTGGAGCCCCGACAGGAACGCCGACTGAAATGGGGACCGGAA
TGCCAACCGCGACGCCCACGGGGATACCGAGCGATCCCCCCACGAGAGCG
CCGACCGCGTCTCCTACCGCAGCTCCGACCGGGATGTCGCTAATCGGCAG
CCTGACAATCACCTCGGACGAGCCGCCCGCCTGCGCCGCGACCAACACCT
GCGAAGACGTGGCGCAGGACGCCCTGGAAGGGTCGCTCGGCCGCAACAAC
GGTACCTTGAACGTCACGTCCGTTACAGTCACTACAAGCCCCGCCGATGA
CAGCCGCAGGTTGCTCTTGGTTACGGGGTTATCATCGCCACCACGATCAT
CTGTCGTTCGAACCGGCAGTTTTCTCCGCGCGTCGACCCCGAGACAGAGA
CAGCTGCAGAGCACCGGAGCGAGCGAGACGGAGACCGATGTCGAGTTTAT
TTCCGCGCCGGTAGATTCTTCTGACCTCACCGAGGCGCAACAGGCTGCGG
AGCAAATTAATGCTCTGGCGGACGGGGGGATCGCTGACTTGCTAGAGATG
CTCGAGCTGCCGTCGGATTCGGAAGTCGACACCGAGGGCATGAAATACGT
CGAATGTAATATATTTTAGCCCGAGACGCGAGAAACTCCTTCCCCAGCCG
GGACTGTAGCGCCTGCCGCGACCGCGGCACCAGCCGCTACCGGGGCTCCT
GCTGAAACCACGGCACCTGCGACGACCGCTGCGCCGGGGGCCACCACAGG
TCCAGGAGCCACCCTGTCACCTTCGCTCACGTCGGCGCCCGCTATAAGTC
TTGCCCCTTCGGCCACTCTGGCACCTGGAGAGACTAAGACTCCGGCGATG
TCTCTGGCACCAGCATCGACTTTAGCCCCCGATGCCACTTTCGCTCCAGG
GGCGACTCTGCCGCCTGCGGTGAGGACAGTGGCACCCGGCGCGACTGTGG
CACCTGATACGACGTTGGCACCGGGGACAACATCGGCACCCGGAACCCTT
GCGCCAGGGGCGACTCTGGCGCCCGGAGCGACTCTGGCACCCGGGGCTAC
CCTGACCCCCACCTTGCCTTCTATATCCCCAACCATTTTCACAAGTACAC
CGTCAGTGATGCGTAGCACAGCGCCAACTGGAGCCCCGACAGGAACGCCG
ACTGAAATGGGGACCGGAATGCCAACCGCGACGCCCACGGGGATACCGAG
CGATCCCCCCACGAGAGCGCCGACCGCGTCTCCTACCGCAGCTCCGACCG
GGATGTCGCTAATCGGCAGCCTGACAATCACCTCGGACGAGCCGCCCGCC
TGCGCCGCGACCAACACCTGCGAAGACGTGGCGCAGGACGCCCTGGAAGG
GTCGCTCGGCCGCAACAACGGTACCTTGAACGTCACGTCCGTTACAGTCA
CTACAAGCCCCGCCGATGACAGCCGCAGGTTGCTCTTGGTTACGGGGTTA
TCATCGCCACCACGATCATCTGTCGTTCGAACCGGCAGTTTTCTCCGCGC
GTCGACCCCGAGACAGAGACAGCTGCAGAGCACCGGAGCGAGCGAGACGG
AGACCGATGTCGAGTTTATTTCCGCGCCGGTAGATTCTTCTGACCTCACC
GAGGCGCAACAGGCTGCGGAGCAAATTAATGCTCTGGCGGACGGGGGGAT
CGCTGACTTGCTAGAGATGCTCGAGCTGCCGTCGGATTCGGAAGTCGACA
CCGAGGGCATGAAATACGTCGAATGTAATATATTTTAG
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