mRNA_F-distichus_contig102159.185.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102159.185.1
Unique NamemRNA_F-distichus_contig102159.185.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: D8LC93_ECTSI (CCHC-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC93_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.920e-35
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNKG 207
            MPATAGRVRMPHGNRVSSSSALKMTGIWTNTI YDPYAAEGG ADA+DEANAFEQAQGLMA+AKLSN+G
Sbjct:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQG 69
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BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A835YWX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX5_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.200e-29
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGG---AADADDEANAFEQAQGLMAVAKLSNKG 207
            MPATAGRVRMPH NRVSSSSALKMTGIWTNTI YDPYAAEGG   AA A D  NA+EQAQGLMA+AKLSN+G
Sbjct:    1 MPATAGRVRMPHNNRVSSSSALKMTGIWTNTIGYDPYAAEGGEAAAAAAADAENAYEQAQGLMALAKLSNEG 72
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BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A2D4C9D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9D1_PYTIN)

HSP 1 Score: 97.4 bits (241), Expect = 9.500e-25
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNKG 207
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTI YDPYAAEG         +++EQA+GLMA+AKLSN+G
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEGEEQQGQVSQSSYEQAKGLMALAKLSNQG 69
[Close]
BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A421EW16_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EW16_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.910e-24
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNK 204
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TI YDPYAAEG   +  +  +++EQAQGLMA+AKLSNK
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEGEKQEKSE--SSYEQAQGLMALAKLSNK 66
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BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A3F2RFL8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFL8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.430e-23
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNK 204
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TI YDPYAAEG   +  +  +++EQAQGLMA+AKLSNK
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEGEKQEKSE--SSYEQAQGLMALAKLSNK 66
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BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A2P4YHG3_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHG3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.130e-22
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNK 204
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TI YDPYAAEG   +  +   ++EQA+GLMA+AKLSNK
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEGEKKETSE--TSYEQAKGLMALAKLSNK 66
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BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A8K1FHX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX2_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 1.840e-22
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNK 204
            MPA+AGRVRMPH NR+ SS+ALKMTGIWTNTI YDPYAAE G    +   +++EQAQGLMA+AKLSNK
Sbjct:    1 MPASAGRVRMPHNNRMHSSAALKMTGIWTNTIGYDPYAAE-GEEKKEVSQSSYEQAQGLMALAKLSNK 67
[Close]
BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A6A3SK00_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SK00_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.900e-22
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNK 204
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTI YDPYAAE    +  D   +FEQA+GLMA+AKLSNK
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEDEKQETSD--TSFEQAKGLMALAKLSNK 66
[Close]
BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A0W8C9S2_PHYNI (CAX-interacting protein 4 n=17 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9S2_PHYNI)

HSP 1 Score: 92.8 bits (229), Expect = 2.180e-21
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNK 204
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTI YDPYAAEG       E + +EQA+GLMA+AKLSNK
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWXNTIGYDPYAAEGEKQGETSETS-YEQAKGLMALAKLSNK 67
[Close]
BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Match: A0A329RX20_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX20_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.370e-21
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEANAFEQAQGLMAVAKLSNK 204
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTI YDPYAAEG       E + +EQA+GLMA+AKLSNK
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGEQQGETSETS-YEQAKGLMALAKLSNK 67
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102159.185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC93_ECTSI1.920e-3592.75CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YWX5_9STRA1.200e-2983.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4C9D1_PYTIN9.500e-2569.57Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A421EW16_9STRA5.910e-2470.59Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RFL8_9STRA2.430e-2370.59Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A2P4YHG3_9STRA1.130e-2269.12Zinc ion binding protein n=1 Tax=Phytophthora palm... [more]
A0A8K1FHX2_PYTOL1.840e-2272.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3SK00_9STRA4.900e-2272.06Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8C9S2_PHYNI2.180e-2170.59CAX-interacting protein 4 n=17 Tax=Phytophthora Ta... [more]
A0A329RX20_9STRA2.370e-2170.59Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102159contigF-distichus_contig102159:946..1152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D8LC93
Preferred nameSREK1IP1
KEGG koko:K11493
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG2985@1,KOG2985@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.3865604-CDS-F-distichus_contig102159:945..11521622928936.3865604-CDS-F-distichus_contig102159:945..1152Fucus distichus monoicousCDSF-distichus_contig102159 946..1152 -
1690885074.2753432-CDS-F-distichus_contig102159:945..11521690885074.2753432-CDS-F-distichus_contig102159:945..1152Fucus distichus monoicousCDSF-distichus_contig102159 946..1152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102159.185.1prot_F-distichus_contig102159.185.1Fucus distichus monoicouspolypeptideF-distichus_contig102159 946..1152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102159.185.1

>prot_F-distichus_contig102159.185.1 ID=prot_F-distichus_contig102159.185.1|Name=mRNA_F-distichus_contig102159.185.1|organism=Fucus distichus monoicous|type=polypeptide|length=69bp
MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEA
NAFEQAQGLMAVAKLSNKG
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mRNA from alignment at F-distichus_contig102159:946..1152-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102159.185.1 ID=mRNA_F-distichus_contig102159.185.1|Name=mRNA_F-distichus_contig102159.185.1|organism=Fucus distichus monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at F-distichus_contig102159:946..1152- (Fucus distichus monoicous)
ATGCCGGCAACTGCGGGTAGGGTGCGAATGCCGCATGGCAATCGCGTTAG
TAGCAGCTCCGCGCTCAAGATGACGGGCATCTGGACGAATACGATCAAGT
ACGACCCATACGCTGCGGAGGGGGGAGCGGCTGATGCGGACGACGAGGCG
AATGCTTTCGAGCAAGCACAGGGTCTCATGGCCGTGGCAAAGCTGTCCAA
TAAGGGG
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Coding sequence (CDS) from alignment at F-distichus_contig102159:946..1152-

>mRNA_F-distichus_contig102159.185.1 ID=mRNA_F-distichus_contig102159.185.1|Name=mRNA_F-distichus_contig102159.185.1|organism=Fucus distichus monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at F-distichus_contig102159:946..1152- (Fucus distichus monoicous)
ATGCCGGCAACTGCGGGTAGGGTGCGAATGCCGCATGGCAATCGCGTTAG
TAGCAGCTCCGCGCTCAAGATGACGGGCATCTGGACGAATACGATCAAGT
ACGACCCATACGCTGCGGAGGGGGGAGCGGCTGATGCGGACGACGAGGCG
AATGCTTTCGAGCAAGCACAGGGTCTCATGGCCGTGGCAAAGCTGTCCAA
TAAGGGGATGCCGGCAACTGCGGGTAGGGTGCGAATGCCGCATGGCAATC
GCGTTAGTAGCAGCTCCGCGCTCAAGATGACGGGCATCTGGACGAATACG
ATCAAGTACGACCCATACGCTGCGGAGGGGGGAGCGGCTGATGCGGACGA
CGAGGCGAATGCTTTCGAGCAAGCACAGGGTCTCATGGCCGTGGCAAAGC
TGTCCAATAAGGGG
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