mRNA_F-distichus_contig10215.183.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: D7FYS9_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS9_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.410e-58 Identity = 91/115 (79.13%), Postives = 107/115 (93.04%), Query Frame = 1
Query: 1 MATPLGTGPIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHDSIESWKQEEEL 345
MATP+GTGPIVQDVAPKGG+P +QI+R+LP RGPRG+V+LGLVT+TMAVGYY+LGQANKARRAE+HEKRLARIALMPMLQAEEDRK VL KRF QLQ+G+H+S+ +WK+EEEL
Sbjct: 1 MATPVGTGPIVQDVAPKGGFPKVQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEEL 115
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: A0A061QUA6_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUA6_9CHLO) HSP 1 Score: 82.0 bits (201), Expect = 1.540e-17 Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 25 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHDSIESW 327
P++QD P GG+P I+IARR+P + GP GA I G+ L M+ G+Y +GQ N RRA+K E+ R AL+P LQAEEDR+ + K+ + + + ++ W
Sbjct: 19 PVLQDGPPPGGFPSIRIARRIPNT-GPSGAAIFGVGALVMSYGFYLVGQTNIQRRADKAEREHVRRALVPFLQAEEDRRYLKAKKQLLEKEASIMKDVDGW 118
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: A0A087SFV8_AUXPR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFV8_AUXPR) HSP 1 Score: 79.3 bits (194), Expect = 1.700e-16 Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 25 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHDSIESWKQEEEL 345
PIVQD P GG+P ++ ARRLP S GP G + G+ MA G+Y++GQ N RR EK EK +R AL+P LQAEEDR+ V Q+ Q+ + + +K EE +
Sbjct: 19 PIVQDGPPPGGFPAVRYARRLPNS-GPAGFTLFGVGAAVMAYGFYQVGQGNIKRRDEKREKLDSRRALVPFLQAEEDRRWVAANEEFQKKQKEIMKNHPEYKAEESV 124
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: A0A5J4XG14_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG14_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 9.790e-16 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 25 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIV 267
P++QD P GG+P ++ ARR+P S GP G + + MA G+ ++GQ N RRA K EK+ AR A+MP+LQAEEDR+ V
Sbjct: 19 PVLQDGPPPGGFPSVRYARRIP-STGPAGFTLFAVTASIMAYGFIKVGQTNHERRAAKAEKKAARFAIMPILQAEEDRRYV 98
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: A0A7S3CKE5_9SPIT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CKE5_9SPIT) HSP 1 Score: 76.6 bits (187), Expect = 2.000e-15 Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 28 IVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKR 279
++QD P GG+P ++IARR+P + GP GA + G+ L ++ G+Y +GQ N +RA++ EK R AL+P+LQAEEDR+ V K+
Sbjct: 22 LLQDGPPAGGFPSVRIARRIPNT-GPSGAAVFGVGALVISYGFYIVGQTNIQKRADRAEKEAVRRALVPVLQAEEDRRFVAAKK 104
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: A0A2P6U3A2_CHLSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3A2_CHLSO) HSP 1 Score: 76.3 bits (186), Expect = 2.690e-15 Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 25 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIV 267
PIVQD P GG+P I+ ARR+P S GP G + + MA G+Y++GQ+N+ RR EK E AR AL+P LQAEEDR+ V
Sbjct: 19 PIVQDGPPPGGFPAIRYARRVP-STGPSGFTLFAVGAAVMAYGFYKVGQSNRQRRGEKAEHFGARAALVPFLQAEEDRRWV 98
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: A0A2P6VLY9_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLY9_9CHLO) HSP 1 Score: 73.9 bits (180), Expect = 2.040e-14 Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 25 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIV 267
P+VQD P GG+P + ARR+P S GP G + MA G+Y++GQ+N+ RRA+K AR AL+P LQAEEDR+ V
Sbjct: 19 PVVQDGPPPGGFPSFRYARRVP-STGPSGITLFAAGAAVMAFGFYKVGQSNRERRAQKAANLAARAALVPFLQAEEDRRWV 98
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: F0YB35_AURAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB35_AURAN) HSP 1 Score: 72.8 bits (177), Expect = 5.730e-14 Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 28 IVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHDSIESWK 330
+VQD+ P GGYP + I ++ +RGP G +I LT+A G+YR+GQ N R A K EKR AR+A++P LQAEED + V K Q + + ++ WK
Sbjct: 18 VVQDMPPAGGYPDV-IFKKATINRGPDGWMIWVGSLLTVAFGFYRVGQCNLERNAAKKEKREARMAIVPYLQAEEDARAVAAKLNQDADEAEIMKGVKDWK 117
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: A0A388KNK5_CHABU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNK5_CHABU) HSP 1 Score: 71.2 bits (173), Expect = 2.440e-13 Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 1
Query: 25 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHDSIESWK 330
P++QD P GG+P I+ AR++P + GP G V+ + ++ G Y++GQ N RRA K EK AR+A++P++QAEED + ++ ++ + ++ WK
Sbjct: 19 PVLQDGPPPGGFPAIRYARKIPNT-GPSGVVVFSIAAAVISYGMYQVGQGNLHRRALKKEKMEARMAILPLIQAEEDVRYAKARQKALAEEEKIMQNVPGWK 119
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Match: A0A0D2WN18_CAPO3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WN18_CAPO3) HSP 1 Score: 68.6 bits (166), Expect = 1.970e-12 Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 25 PIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVGYYRLGQANKARRAEKHEKRLARIALMPMLQAEEDRKIVLTKRFQQQLQQGMHDSIESWKQEEEL 345
P QD+ P+GG+ + R+ RG GA + + T+TM G + +GQ NK RR + E+ +AR L+PMLQAEEDR+ VL KR + + + ++ WK E++
Sbjct: 5 PYKQDMPPQGGFADVPF-RKPKAVRGLSGAALFAIGTVTMFGGLFIVGQGNKTRRYWREEQVIARRNLVPMLQAEEDRRFVLAKRAAEAKEAELMKNVRGWKMHEKI 110 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10215.183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10215.183.1 >prot_F-distichus_contig10215.183.1 ID=prot_F-distichus_contig10215.183.1|Name=mRNA_F-distichus_contig10215.183.1|organism=Fucus distichus monoicous|type=polypeptide|length=117bp MATPLGTGPIVQDVAPKGGYPPIQIARRLPESRGPRGAVILGLVTLTMAVback to top mRNA from alignment at F-distichus_contig10215:4703..8196+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10215.183.1 ID=mRNA_F-distichus_contig10215.183.1|Name=mRNA_F-distichus_contig10215.183.1|organism=Fucus distichus monoicous|type=mRNA|length=3494bp|location=Sequence derived from alignment at F-distichus_contig10215:4703..8196+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10215:4703..8196+ >mRNA_F-distichus_contig10215.183.1 ID=mRNA_F-distichus_contig10215.183.1|Name=mRNA_F-distichus_contig10215.183.1|organism=Fucus distichus monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at F-distichus_contig10215:4703..8196+ (Fucus distichus monoicous)back to top |