mRNA_F-distichus_contig102144.182.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102144.182.1
Unique NamemRNA_F-distichus_contig102144.182.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102144.182.1 vs. uniprot
Match: A0A6H5L4U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U4_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 6.260e-56
Identity = 86/140 (61.43%), Postives = 105/140 (75.00%), Query Frame = 1 
Query:    1 QIVILPDTSGLLEGALLIGIALGVVGHFFAGVPSRSLAFVRSRGLWFVVSMACYLTGVGGMIFCIIRNPKAHGYNHTGGAAMFSPGGRDQFWYEGAVVALLYVGMSSAILGIYAGVGWKRAPSMARGVVVMACVTRPCYL 420
            ++VI+ D+SGLL  ALL+G+ LGV  HF A VPSR +  VR +GLWF VSM CY+TGVGGMI+CIIRNPK HGY+  G  AM SPGGRDQFWYEG VV++LY+ MS+AILG+Y    WKR P   R   V+AC+T  CY+
Sbjct:  190 RVVIVADSSGLLPAALLLGVILGVAAHFLAAVPSRVMTTVRHKGLWFAVSMGCYMTGVGGMIYCIIRNPKTHGYHQDGATAMMSPGGRDQFWYEGMVVSVLYLFMSAAILGVYYAASWKRVPYPLRTAAVLACITVLCYV 329
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BLAST of mRNA_F-distichus_contig102144.182.1 vs. uniprot
Match: D8LGN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN1_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 5.410e-55
Identity = 86/139 (61.87%), Postives = 103/139 (74.10%), Query Frame = 1 
Query:    4 IVILPDTSGLLEGALLIGIALGVVGHFFAGVPSRSLAFVRSRGLWFVVSMACYLTGVGGMIFCIIRNPKAHGYNHTGGAAMFSPGGRDQFWYEGAVVALLYVGMSSAILGIYAGVGWKRAPSMARGVVVMACVTRPCYL 420
            +VI+ D+SGLL  ALL+G  LGV  HF A VPSR +  VR +GLWF VS+ CY+TGVGGMI+CIIRNPK HGY+  G  AM S GGRDQFWYEG VVA+LY+ MS+AILG+Y    WKR PS  R   V+AC+T  CY+
Sbjct:  152 VVIVADSSGLLPAALLLGAILGVAAHFLADVPSRVMTTVRHKGLWFTVSLGCYMTGVGGMIYCIIRNPKTHGYHQDGATAMMSAGGRDQFWYEGMVVAVLYLFMSAAILGVYYAASWKRVPSPLRTAAVLACITVLCYV 290
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BLAST of mRNA_F-distichus_contig102144.182.1 vs. uniprot
Match: A0A836CKN7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.300e-27
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1 
Query:    1 QIVILPDTSGLLEGALLIGIALGVVGHFFAGVPSRSLAFVRSRGLWFVVSMACYLTGVGGMIFCIIRNPKAHGYNHTG------GAAMFSPGGRDQFWYEGAVVALLYVGMSSAILGIYAGVGWKRAPSMARGVVVMACV 402
             +V+L D + L     L    + V+ HF    P+R LA VRS+ LW +VS+A Y  GVGG+I+CIIRNP+ +G   TG         +FS   RDQ+W+EG VVA LY+ M+ A  GI + V W+RA  + R + V  C+
Sbjct:  122 SLVVLRDMTYLQLAVCLAAALVAVLAHFVVLEPTRMLALVRSKALWLMVSLATYTVGVGGLIYCIIRNPQEYGTKPTGINSTGHKVVLFSTNARDQWWWEGIVVAFLYLLMAGATWGITSAVQWRRAHPLLRNLAVCCCI 261
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102144.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4U4_9PHAE6.260e-5661.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGN1_ECTSI5.410e-5561.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CKN7_9STRA1.300e-2742.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102144contigF-distichus_contig102144:26..966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog653948.CCA18337
Preferred nameOST3
KEGG koko:K12669,ko:K19478
KEGG TC9.A.45.1.1,9.A.45.1.2,9.A.45.1.3,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0010483,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0022414,GO:0031224,GO:0031984,GO:0032501,GO:0032991,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0051703,GO:0051704,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.protein N-linked glycosylation via asparagine
EggNOG OGsKOG2603@1,KOG2603@2759
Ec32 ortholog descriptionOligosaccharyl transferase complex, subunit OST3/OST6
Ec32 orthologEc-10_002870.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons3
Model size420
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102144.182.1prot_F-distichus_contig102144.182.1Fucus distichus monoicouspolypeptideF-distichus_contig102144 26..966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.0706654-CDS-F-distichus_contig102144:25..861622928936.0706654-CDS-F-distichus_contig102144:25..86Fucus distichus monoicousCDSF-distichus_contig102144 26..86 -
1690885074.104207-CDS-F-distichus_contig102144:25..861690885074.104207-CDS-F-distichus_contig102144:25..86Fucus distichus monoicousCDSF-distichus_contig102144 26..86 -
1622928936.0881672-CDS-F-distichus_contig102144:356..4871622928936.0881672-CDS-F-distichus_contig102144:356..487Fucus distichus monoicousCDSF-distichus_contig102144 357..487 -
1690885074.1277812-CDS-F-distichus_contig102144:356..4871690885074.1277812-CDS-F-distichus_contig102144:356..487Fucus distichus monoicousCDSF-distichus_contig102144 357..487 -
1622928936.107326-CDS-F-distichus_contig102144:738..9661622928936.107326-CDS-F-distichus_contig102144:738..966Fucus distichus monoicousCDSF-distichus_contig102144 739..966 -
1690885074.1399262-CDS-F-distichus_contig102144:738..9661690885074.1399262-CDS-F-distichus_contig102144:738..966Fucus distichus monoicousCDSF-distichus_contig102144 739..966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102144.182.1

>prot_F-distichus_contig102144.182.1 ID=prot_F-distichus_contig102144.182.1|Name=mRNA_F-distichus_contig102144.182.1|organism=Fucus distichus monoicous|type=polypeptide|length=140bp
QIVILPDTSGLLEGALLIGIALGVVGHFFAGVPSRSLAFVRSRGLWFVVS
MACYLTGVGGMIFCIIRNPKAHGYNHTGGAAMFSPGGRDQFWYEGAVVAL
LYVGMSSAILGIYAGVGWKRAPSMARGVVVMACVTRPCYL
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mRNA from alignment at F-distichus_contig102144:26..966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102144.182.1 ID=mRNA_F-distichus_contig102144.182.1|Name=mRNA_F-distichus_contig102144.182.1|organism=Fucus distichus monoicous|type=mRNA|length=941bp|location=Sequence derived from alignment at F-distichus_contig102144:26..966- (Fucus distichus monoicous)
CAGATAGTCATCCTACCGGACACCTCGGGTTTGCTGGAGGGAGCCCTGCT
GATCGGCATCGCCCTGGGGGTAGTCGGGCACTTCTTTGCGGGAGTTCCAT
CTCGATCCTTGGCGTTTGTCAGGAGCAGGGGCCTGTGGTTCGTGGTGTCC
ATGGCTTGCTACCTGACGGGAGTTGGGGGCATGATCTTCTGCATCATCCG
AAATCCTAAGGCCCACGGATACAATCATGTATGGCAAAAGTCTTGCTTGT
CTTATACCAGTAGGGACACACTCACTGTAGATAGGATAGGGGGGCGCAAC
GGAATATCTCTCATGAAATCTCGGGCTGCATCCCCATCCCCACCTTCCCC
CTTCCCGTACATTTGCATCCCTCCTCATAGTATGAAATCCATCGTACGCT
CGCTCTCGGTGCTGCCCGCCTGAACAAATAGCTTGATTCGCCTTTTCCCA
CCCCCGCGACATCTCGCCGCCTGCAGGAGACCGGAGGCGCGGCGATGTTC
AGCCCGGGGGGGCGAGACCAGTTTTGGTATGAGGGCGCGGTGGTGGCGCT
CTTGTACGTCGGCATGTCCTCGGCGATCCTTGGGATCTACGCGGGCGTCG
GCTGGAAGAGGTGCTTTTTGCCTTTTTTTTTGCATCGCTCGCGTCCAGCA
GCATTATAAAAGTATAGACTCTACAGTAGCAGTATCGTAGTTGTTGTTTT
TTTGGCGGGGCGGAGGGGTGGGGGTCCGGAGGGGACCTCATTTGGTTCCG
CGTGTATTATATTTTTCCAGAGATGCCCTAATCAAGTTTTCCCAGTGAGC
CATCTATGTAACTATACTAATAATATGTTCTTTACGCGTGGAACTTTTTT
TTTTGGGGGGGGGGGGGTCGGTTATGTCAGGGCGCCTTCGATGGCGCGCG
GAGTGGTGGTAATGGCCTGTGTGACGCGGCCCTGCTACCTG
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Coding sequence (CDS) from alignment at F-distichus_contig102144:26..966-

>mRNA_F-distichus_contig102144.182.1 ID=mRNA_F-distichus_contig102144.182.1|Name=mRNA_F-distichus_contig102144.182.1|organism=Fucus distichus monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at F-distichus_contig102144:26..966- (Fucus distichus monoicous)
CAGATAGTCATCCTACCGGACACCTCGGGTTTGCTGGAGGGAGCCCTGCT
GATCGGCATCGCCCTGGGGGTAGTCGGGCACTTCTTTGCGGGAGTTCCAT
CTCGATCCTTGGCGTTTGTCAGGAGCAGGGGCCTGTGGTTCGTGGTGTCC
ATGGCTTGCTACCTGACGGGAGTTGGGGGCATGATCTTCTGCATCATCCG
AAATCCTAAGGCCCACGGATACAATCATCAGATAGTCATCCTACCGGACA
CCTCGGGTTTGCTGGAGGGAGCCCTGCTGATCGGCATCGCCCTGGGGGTA
GTCGGGCACTTCTTTGCGGGAGTTCCATCTCGATCCTTGGCGTTTGTCAG
GAGCAGGGGCCTGTGGTTCGTGGTGTCCATGGCTTGCTACCTGACGGGAG
TTGGGGGCATGATCTTCTGCATCATCCGAAATCCTAAGGCCCACGGATAC
AATCATACCGGAGGCGCGGCGATGTTCAGCCCGGGGGGGCGAGACCAGTT
TTGGTATGAGGGCGCGGTGGTGGCGCTCTTGTACGTCGGCATGTCCTCGG
CGATCCTTGGGATCTACGCGGGCGTCGGCTGGAAGAGACCGGAGGCGCGG
CGATGTTCAGCCCGGGGGGGCGAGACCAGTTTTGGTATGAGGGCGCGGTG
GTGGCGCTCTTGTACGTCGGCATGTCCTCGGCGATCCTTGGGATCTACGC
GGGCGTCGGCTGGAAGAGGGCGCCTTCGATGGCGCGCGGAGTGGTGGTAA
TGGCCTGTGTGACGCGGCCCTGCTACCTGGGCGCCTTCGATGGCGCGCGG
AGTGGTGGTAATGGCCTGTGTGACGCGGCCCTGCTACCTG
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