mRNA_F-distichus_contig102134.180.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102134.180.1
Unique NamemRNA_F-distichus_contig102134.180.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102134.180.1 vs. uniprot
Match: A0A6H5KW97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW97_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.090e-10
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  127 SFSRPSRAVVTFALYSTTVREDAADSPSSCSLVGPLKERRIYEVEALEHNTLQQVMG 297
            SFS PSRAVVTFALY +  +      P      G L E+R++EVEALEHNTLQQVMG
Sbjct:    4 SFSGPSRAVVTFALYRSAAKGKGLRLP------GHLPEKRLFEVEALEHNTLQQVMG 54
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BLAST of mRNA_F-distichus_contig102134.180.1 vs. uniprot
Match: D7FU78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU78_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 6.010e-10
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  115 RILPSFSRPSRAVVTFALYSTTVREDAADSPSSCSLVGPLKERRIYEVEALEHNTLQQVMG 297
            RI  SFS PSRAVVTFALY +  +      P      G L E+R++EVEALEHNTLQQ+MG
Sbjct:  305 RIFQSFSGPSRAVVTFALYRSAAKGKGLRLP------GHLPEKRLFEVEALEHNTLQQIMG 359
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102134.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW97_9PHAE3.090e-1059.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU78_ECTSI6.010e-1057.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102134contigF-distichus_contig102134:547..855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.770738-CDS-F-distichus_contig102134:546..8551622928935.770738-CDS-F-distichus_contig102134:546..855Fucus distichus monoicousCDSF-distichus_contig102134 547..855 -
1690885074.0646183-CDS-F-distichus_contig102134:546..8551690885074.0646183-CDS-F-distichus_contig102134:546..855Fucus distichus monoicousCDSF-distichus_contig102134 547..855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102134.180.1prot_F-distichus_contig102134.180.1Fucus distichus monoicouspolypeptideF-distichus_contig102134 547..855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102134.180.1

>prot_F-distichus_contig102134.180.1 ID=prot_F-distichus_contig102134.180.1|Name=mRNA_F-distichus_contig102134.180.1|organism=Fucus distichus monoicous|type=polypeptide|length=103bp
TVHSTASNNPAAATAPKSSVGGTIAASGGSGDVERHVGRILPSFSRPSRA
VVTFALYSTTVREDAADSPSSCSLVGPLKERRIYEVEALEHNTLQQVMGE
LDP
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mRNA from alignment at F-distichus_contig102134:547..855-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102134.180.1 ID=mRNA_F-distichus_contig102134.180.1|Name=mRNA_F-distichus_contig102134.180.1|organism=Fucus distichus monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at F-distichus_contig102134:547..855- (Fucus distichus monoicous)
ACCGTCCACTCCACCGCGTCCAACAACCCTGCGGCCGCGACGGCGCCTAA
ATCATCGGTCGGTGGGACCATCGCGGCTTCAGGAGGATCGGGGGATGTGG
AGAGGCACGTGGGACGGATTTTGCCATCGTTTTCGCGGCCCAGTCGAGCG
GTGGTGACCTTCGCGCTGTACAGTACGACAGTCAGGGAGGACGCCGCCGA
CTCCCCGTCCTCTTGCTCCCTCGTGGGCCCCTTGAAGGAGAGGCGGATAT
ACGAGGTGGAGGCGCTCGAGCACAACACGCTGCAGCAGGTCATGGGTGAG
TTAGACCCG
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Coding sequence (CDS) from alignment at F-distichus_contig102134:547..855-

>mRNA_F-distichus_contig102134.180.1 ID=mRNA_F-distichus_contig102134.180.1|Name=mRNA_F-distichus_contig102134.180.1|organism=Fucus distichus monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at F-distichus_contig102134:547..855- (Fucus distichus monoicous)
ACCGTCCACTCCACCGCGTCCAACAACCCTGCGGCCGCGACGGCGCCTAA
ATCATCGGTCGGTGGGACCATCGCGGCTTCAGGAGGATCGGGGGATGTGG
AGAGGCACGTGGGACGGATTTTGCCATCGTTTTCGCGGCCCAGTCGAGCG
GTGGTGACCTTCGCGCTGTACAGTACGACAGTCAGGGAGGACGCCGCCGA
CTCCCCGTCCTCTTGCTCCCTCGTGGGCCCCTTGAAGGAGAGGCGGATAT
ACGAGGTGGAGGCGCTCGAGCACAACACGCTGCAGCAGGTCATGGGTGAG
TTAGACCCGACCGTCCACTCCACCGCGTCCAACAACCCTGCGGCCGCGAC
GGCGCCTAAATCATCGGTCGGTGGGACCATCGCGGCTTCAGGAGGATCGG
GGGATGTGGAGAGGCACGTGGGACGGATTTTGCCATCGTTTTCGCGGCCC
AGTCGAGCGGTGGTGACCTTCGCGCTGTACAGTACGACAGTCAGGGAGGA
CGCCGCCGACTCCCCGTCCTCTTGCTCCCTCGTGGGCCCCTTGAAGGAGA
GGCGGATATACGAGGTGGAGGCGCTCGAGCACAACACGCTGCAGCAGGTC
ATGGGTGAGTTAGACCCG
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