mRNA_F-distichus_contig10213.179.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10213.179.1
Unique NamemRNA_F-distichus_contig10213.179.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10213.179.1 vs. uniprot
Match: D8LT27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT27_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.310e-5
Identity = 38/68 (55.88%), Postives = 41/68 (60.29%), Query Frame = -2 
Query:   87 PALGAELGKAEARQAKNLWVTSRAIDGLLDCVARAKRELDDANSTSAVTGA---SASSPHLRTSTKSP 281
            PAL  EL KAEARQA NL VT++AID L   VARAKRELD         G    +ASS  LR   KSP
Sbjct:   10 PALSPELNKAEARQASNLRVTTKAIDALHARVARAKRELDKHKKQLEAAGGGAGAASSEGLRAGAKSP 77
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BLAST of mRNA_F-distichus_contig10213.179.1 vs. uniprot
Match: A0A6H5K8M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.180e-5
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = -2 
Query:  153 PALGAELGKAEARQAKNLWVTSRAIDGLLDCVARAKRELDDAN 281
            PALG EL KAEARQA NL VT++AID L   VARAKRELD  N
Sbjct:   10 PALGPELNKAEARQASNLRVTTKAIDALHARVARAKRELDKHN 52
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10213.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT27_ECTSI1.310e-555.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8M5_9PHAE2.180e-572.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10213contigF-distichus_contig10213:346..850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.7268314-CDS-F-distichus_contig10213:345..8491622928935.7268314-CDS-F-distichus_contig10213:345..849Fucus distichus monoicousCDSF-distichus_contig10213 346..849 +
1690885074.0560784-CDS-F-distichus_contig10213:345..8491690885074.0560784-CDS-F-distichus_contig10213:345..849Fucus distichus monoicousCDSF-distichus_contig10213 346..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10213.179.1prot_F-distichus_contig10213.179.1Fucus distichus monoicouspolypeptideF-distichus_contig10213 346..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10213.179.1

>prot_F-distichus_contig10213.179.1 ID=prot_F-distichus_contig10213.179.1|Name=mRNA_F-distichus_contig10213.179.1|organism=Fucus distichus monoicous|type=polypeptide|length=168bp
FSFASPSPAPLLLPLRELLVDGDFDGDFDGDFVEVLRWGELADAPVTALV
ELASSSSLFARATQSRSPSIALLVTQRFLACLASAFPSSAPRAGVVACAG
DCDGTDAIAGELPNGTTLHYTKHSTCFYYCRVKGCRRSAGSGLSESLVAV
RVIWSRSGRTSAPRPSRP
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mRNA from alignment at F-distichus_contig10213:346..850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10213.179.1 ID=mRNA_F-distichus_contig10213.179.1|Name=mRNA_F-distichus_contig10213.179.1|organism=Fucus distichus monoicous|type=mRNA|length=505bp|location=Sequence derived from alignment at F-distichus_contig10213:346..850+ (Fucus distichus monoicous)
TTCTCTTTCGCCTCCCCCTCCCCCGCTCCTTTGCTCTTGCCCTTGAGGGA
ACTTCTCGTCGACGGAGATTTCGATGGAGATTTCGACGGAGATTTTGTAG
AAGTTCTAAGGTGGGGGGAGCTCGCCGACGCACCGGTGACCGCGCTGGTA
GAGTTGGCGTCGTCCAGCTCTCTCTTCGCCCGGGCGACGCAGTCTAGGAG
CCCGTCGATCGCTCTACTGGTCACCCAGAGATTCTTGGCCTGCCTCGCCT
CGGCCTTTCCTAGTTCGGCGCCGAGGGCCGGGGTCGTGGCCTGCGCCGGC
GACTGCGATGGCACTGATGCCATCGCAGGAGAGCTACCGAACGGTACCAC
TCTGCACTACACCAAACACAGCACTTGCTTCTATTATTGTAGGGTTAAAG
GCTGTCGGCGATCTGCTGGGTCGGGCTTGTCTGAAAGTTTGGTCGCGGTG
CGAGTGATATGGTCGCGTTCCGGACGGACTTCAGCACCTCGACCAAGTCG
GCCCA
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Coding sequence (CDS) from alignment at F-distichus_contig10213:346..850+

>mRNA_F-distichus_contig10213.179.1 ID=mRNA_F-distichus_contig10213.179.1|Name=mRNA_F-distichus_contig10213.179.1|organism=Fucus distichus monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at F-distichus_contig10213:346..850+ (Fucus distichus monoicous)
TTCTCTTTCGCCTCCCCCTCCCCCGCTCCTTTGCTCTTGCCCTTGAGGGA
ACTTCTCGTCGACGGAGATTTCGATGGAGATTTCGACGGAGATTTTGTAG
AAGTTCTAAGGTGGGGGGAGCTCGCCGACGCACCGGTGACCGCGCTGGTA
GAGTTGGCGTCGTCCAGCTCTCTCTTCGCCCGGGCGACGCAGTCTAGGAG
CCCGTCGATCGCTCTACTGGTCACCCAGAGATTCTTGGCCTGCCTCGCCT
CGGCCTTTCCTAGTTCGGCGCCGAGGGCCGGGGTCGTGGCCTGCGCCGGC
GACTGCGATGGCACTGATGCCATCGCAGGAGAGCTACCGAACGGTACCAC
TCTGCACTACACCAAACACAGCACTTGCTTCTATTATTGTAGGGTTAAAG
GCTGTCGGCGATCTGCTGGGTCGGGCTTGTCTGAAAGTTTGGTCGCGGTG
CGAGTGATATGGTCGCGTTCCGGACGGACTTCAGCACCTCGACCAAGTCG
GCCCTTCTCTTTCGCCTCCCCCTCCCCCGCTCCTTTGCTCTTGCCCTTGA
GGGAACTTCTCGTCGACGGAGATTTCGATGGAGATTTCGACGGAGATTTT
GTAGAAGTTCTAAGGTGGGGGGAGCTCGCCGACGCACCGGTGACCGCGCT
GGTAGAGTTGGCGTCGTCCAGCTCTCTCTTCGCCCGGGCGACGCAGTCTA
GGAGCCCGTCGATCGCTCTACTGGTCACCCAGAGATTCTTGGCCTGCCTC
GCCTCGGCCTTTCCTAGTTCGGCGCCGAGGGCCGGGGTCGTGGCCTGCGC
CGGCGACTGCGATGGCACTGATGCCATCGCAGGAGAGCTACCGAACGGTA
CCACTCTGCACTACACCAAACACAGCACTTGCTTCTATTATTGTAGGGTT
AAAGGCTGTCGGCGATCTGCTGGGTCGGGCTTGTCTGAAAGTTTGGTCGC
GGTGCGAGTGATATGGTCGCGTTCCGGACGGACTTCAGCACCTCGACCAA
GTCGGCCC
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