mRNA_F-distichus_contig10212.178.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: D7FNQ5_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ5_ECTSI) HSP 1 Score: 339 bits (869), Expect = 8.430e-112 Identity = 177/225 (78.67%), Postives = 195/225 (86.67%), Query Frame = 3
Query: 201 RTYSSTRRLH-NYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINI----PGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQVGS 860
R YSSTRR+ NYLPMVLE+TPRGERAYDIYSRLLRERIIC+HGP+TEQM+SLVTAQLLFLESE+P KPIN+ PGG+VTAGLA+YDTMQYV PEICTICMGQAASMGSLLLTAG+P MRFILPNAK VMLHQPSGGA+GMAADIAI+AEEIIKTR+RLN+IYA+H+GREV EI KVMDRDFYMTAQEAI+FGVVDKI+ KRPKE GS
Sbjct: 30 RAYSSTRRVEMNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVTAQLLFLESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPEMRFILPNAK---------------VMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGREVGEIEKVMDRDFYMTAQEAIEFGVVDKILKKRPKEGEGS 239
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A835Z6X3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X3_9STRA) HSP 1 Score: 270 bits (690), Expect = 5.150e-85 Identity = 144/219 (65.75%), Postives = 170/219 (77.63%), Query Frame = 3
Query: 201 RTYSSTRRLHNYLPMVLETTP-RGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPI----NIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRP 842
R+ SST +PMV+E+TP +GER +DIYSRLLRERI+ L GP++E+M+S+VTAQLLFLESEDP KPI N PGG+VTAGLA+YDTMQYVGP+ICT+CMGQAASM SLLLTAG P MR+ILPNA+ VMLHQPSGGA GMAADIAIVAEEI++TRS LN +Y+ H+G+ V EI KVMDRD + AQ+AI FGVVD I KRP
Sbjct: 19 RSISSTAVSRALVPMVVESTPGKGERGFDIYSRLLRERIVFLQGPVSEEMASVVTAQLLFLESEDPEKPISMYINSPGGLVTAGLAIYDTMQYVGPKICTVCMGQAASMASLLLTAGEPGMRYILPNAR---------------VMLHQPSGGAHGMAADIAIVAEEILRTRSVLNNLYSHHTGQPVSEIEKVMDRDTHYDAQQAIAFGVVDAIHEKRP 222
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A7S2SUT0_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUT0_9STRA) HSP 1 Score: 257 bits (657), Expect = 4.470e-80 Identity = 133/230 (57.83%), Postives = 165/230 (71.74%), Query Frame = 3
Query: 207 YSSTRRLHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQV----GSEDEP 872
+ S RL +P+VLE + RGER+YDIYSRLLRERIICLHG +TE+M+S+VTAQLLFLE+EDP +P IN PGG+V+AGLA+YDTMQY+ P + T+CMGQAASMGSLLL G RF LPNAK +MLHQPSGG GMA+DIAI AEEI+KTRS LN++Y H +E+ ++ VMDRD + +AQEA+DFGV+D ++ KR E V G E P
Sbjct: 15 FRSIARLRGIVPIVLEQSSRGERSYDIYSRLLRERIICLHGAVTEEMASVVTAQLLFLEAEDPDRPCSMYINSPGGLVSAGLAIYDTMQYIRPPVHTVCMGQAASMGSLLLAGGEAGKRFALPNAK---------------IMLHQPSGGTQGMASDIAIAAEEILKTRSSLNKLYVHHCQQELAQVEAVMDRDTWFSAQEALDFGVIDDMLRKREDEPVEEDHGGEGSP 229
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: F0YHM6_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHM6_AURAN) HSP 1 Score: 251 bits (642), Expect = 2.470e-78 Identity = 125/208 (60.10%), Postives = 160/208 (76.92%), Query Frame = 3
Query: 237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPI----NIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKE 848
+PMV+E + RGERA+DIYSRLL+ERII L+GP+ ++++S+VTAQLLFLESEDP PI N PGG+VTAGLA+YDTMQY+ P + T+CMGQAASMGSLLL AG MR LPNA+ +MLHQPSGGA G A+DIAIVA+EI+KTR++LN+IY H+ + + ++ KVMDRD Y TAQEA+DFGVVD+++ R K+
Sbjct: 2 VPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISMYINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQ---------------IMLHQPSGGAQGQASDIAIVAKEILKTRAKLNDIYVHHTKKPLADVEKVMDRDSYFTAQEAMDFGVVDEVVHPRTKD 194
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: B8BVD6_THAPS (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVD6_THAPS) HSP 1 Score: 250 bits (639), Expect = 6.280e-78 Identity = 124/205 (60.49%), Postives = 158/205 (77.07%), Query Frame = 3
Query: 237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 839
+P+VLE+ GERA+DIYSRLLRERIIC+HG +T+ M+SLVTAQLLFLE+E P KP IN PGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGSLLL G+ RF LPNA+ +MLHQPSGGA GMA+DI I A EI++TR+ LN++Y H+GRE+ EI +VMDRD +M ++A+DFGV+D+++TKR
Sbjct: 2 VPVVLESGTTGERAFDIYSRLLRERIICVHGEVTDSMASLVTAQLLFLEAEAPEKPVYMYINSPGGLVTAGMAMYDTMQYIHPEVHTICMGQAASMGSLLLAGGSAGCRFALPNAR---------------IMLHQPSGGAQGMASDIDIQAREILRTRANLNQLYVHHTGRELEEIERVMDRDTFMDVRQAVDFGVIDEVLTKR 191
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A6U3X7K7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3X7K7_9STRA) HSP 1 Score: 250 bits (639), Expect = 1.230e-77 Identity = 127/205 (61.95%), Postives = 155/205 (75.61%), Query Frame = 3
Query: 237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 839
+P+VLE T RGERAYDIYSRLLRERIICLHGP+TE M+SLVTAQLLFLESE P +P IN PGG+V+AGLA+YDTMQY+ PE+ T+CMGQAASMGSLLL G P R+ LPNAK +MLHQPSGGA GMA+DIAI AEEI+KTR+ LN +Y +H+G+ + + K MDRD + +A +FGV+D+I+T R
Sbjct: 21 VPIVLEQTSRGERAYDIYSRLLRERIICLHGPVTEDMASLVTAQLLFLESELPDQPLSMYINSPGGLVSAGLAIYDTMQYIKPEVRTMCMGQAASMGSLLLAGGAPGHRYALPNAK---------------IMLHQPSGGAQGMASDIAIQAEEILKTRATLNNLYVRHTGQPLDRVEKAMDRDTWFDVTQAKEFGVIDQILTNR 210
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A7S3KZ88_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZ88_9STRA) HSP 1 Score: 251 bits (641), Expect = 2.160e-77 Identity = 126/210 (60.00%), Postives = 161/210 (76.67%), Query Frame = 3
Query: 237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQV 854
+P+VLE+ GER++DIYSRLLRERIIC+HG +T+ M+SLVTAQLLFLESE+P +P IN PGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGS+LL G P RF LPN++ +MLHQPSGGA GMAADI I A EI++TR+ LN I A+H+ + + EI +VMDRDF+M AQ+A DFGV+D I+TKR K+++
Sbjct: 46 VPIVLESGAMGERSFDIYSRLLRERIICVHGEVTDVMASLVTAQLLFLESENPDRPVYMYINSPGGLVTAGMAMYDTMQYIRPEVQTICMGQAASMGSVLLAGGEPGYRFALPNSR---------------IMLHQPSGGAQGMAADIDIQAREILRTRANLNRIMAEHTKQSIEEIERVMDRDFFMDAQQAKDFGVIDHILTKRTKDEI 240
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A6S9KWE2_HETAK (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KWE2_HETAK) HSP 1 Score: 250 bits (638), Expect = 5.160e-77 Identity = 124/207 (59.90%), Postives = 160/207 (77.29%), Query Frame = 3
Query: 231 NYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 839
N +PMVLE++ RGERAYDIYSRLLRERII +HGPITEQ++S+VTAQLLFLE+EDP K IN PGG+VTAG+A+YDTMQ++ ++ TICMGQAASMGSLLL G P R LPNA+ +MLHQPSGGA GMA+DIAI AEEI++ RS LN++Y H+G+ + +I +VM+RD + AQ+A++FGV+DK+++KR
Sbjct: 40 NLVPMVLESSNRGERAYDIYSRLLRERIIYVHGPITEQLASVVTAQLLFLEAEDPDKKLYMYINSPGGVVTAGMAIYDTMQFIQSDVATICMGQAASMGSLLLAGGAPGQRSALPNAR---------------IMLHQPSGGAQGMASDIAIQAEEILRIRSSLNQLYQHHTGQALADIERVMERDTFFDAQQALNFGVIDKVLSKR 231
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A2D4BRY0_PYTIN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRY0_PYTIN) HSP 1 Score: 246 bits (628), Expect = 6.450e-76 Identity = 124/217 (57.14%), Postives = 158/217 (72.81%), Query Frame = 3
Query: 213 STRRLHNYL----PMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 839
S RRLH +L PMVLE +PRGER YDIYSRLL+ERI+ +HGP+ + M+SLVTAQLLFLE+E P K IN PGG+VT+GLA+YDTMQY+ P + T+CMGQAASMG+LLL AG P R+ LPN++ +M+HQPSGGA GMA+DIAI AEEIIK R+RLN ++ H+G+ + I K MDRD +M EA++FG++D I+ KR
Sbjct: 3 SRRRLHTFLNSVVPMVLEQSPRGERVYDIYSRLLKERIVFVHGPVNDSMASLVTAQLLFLEAEHPEKDVYMYINSPGGVVTSGLAIYDTMQYIHPRVNTLCMGQAASMGALLLAAGAPGCRYALPNSR---------------IMVHQPSGGAQGMASDIAIQAEEIIKLRARLNGLFVHHTGKPLKTIEKAMDRDLFMDPPEALEFGIIDSIMNKR 204
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A2E7F7B8_9PROT (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7F7B8_9PROT) HSP 1 Score: 244 bits (622), Expect = 5.450e-75 Identity = 125/228 (54.82%), Postives = 164/228 (71.93%), Query Frame = 3
Query: 237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPI----NIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQVGSEDEPRA*DVLGQRGTK 908
+PMV+ETT RGERAYDIYSRLL+ERII + GPI + +SSL+ AQLLFLESE+P K I N PGG+VT+GLA+YDTMQY+ P + T+C+GQAASMGSLLL AG R+ LPNA+ +M+HQPSGGA G A DI I A+EI+ R RLNEIY +H+G+++ I + ++RD YMT ++A DFG+VD+++TKRP+ + G+ED LG +G K
Sbjct: 13 VPMVVETTNRGERAYDIYSRLLKERIIFVTGPIEDYVSSLICAQLLFLESENPKKEIAFYINSPGGVVTSGLAIYDTMQYIHPPVSTVCIGQAASMGSLLLAAGAEGQRYALPNAR---------------IMVHQPSGGAQGQATDIEIQAKEILSLRKRLNEIYVEHTGQKIDIIEQALERDRYMTPEDAKDFGIVDEVVTKRPEPEEGNED-------LGDKGGK 218 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10212.178.1 >prot_F-distichus_contig10212.178.1 ID=prot_F-distichus_contig10212.178.1|Name=mRNA_F-distichus_contig10212.178.1|organism=Fucus distichus monoicous|type=polypeptide|length=266bp MTLRSLFQRNLVHVEAGIKFSRGTMAAVVGDPCSSRRRTRTYSSTRRLHNback to top mRNA from alignment at F-distichus_contig10212:3979..6894- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10212.178.1 ID=mRNA_F-distichus_contig10212.178.1|Name=mRNA_F-distichus_contig10212.178.1|organism=Fucus distichus monoicous|type=mRNA|length=2916bp|location=Sequence derived from alignment at F-distichus_contig10212:3979..6894- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10212:3979..6894- >mRNA_F-distichus_contig10212.178.1 ID=mRNA_F-distichus_contig10212.178.1|Name=mRNA_F-distichus_contig10212.178.1|organism=Fucus distichus monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at F-distichus_contig10212:3979..6894- (Fucus distichus monoicous)back to top |