mRNA_F-distichus_contig10212.178.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10212.178.1
Unique NamemRNA_F-distichus_contig10212.178.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: D7FNQ5_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ5_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 8.430e-112
Identity = 177/225 (78.67%), Postives = 195/225 (86.67%), Query Frame = 3
Query:  201 RTYSSTRRLH-NYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINI----PGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQVGS 860
            R YSSTRR+  NYLPMVLE+TPRGERAYDIYSRLLRERIIC+HGP+TEQM+SLVTAQLLFLESE+P KPIN+    PGG+VTAGLA+YDTMQYV PEICTICMGQAASMGSLLLTAG+P MRFILPNAK               VMLHQPSGGA+GMAADIAI+AEEIIKTR+RLN+IYA+H+GREV EI KVMDRDFYMTAQEAI+FGVVDKI+ KRPKE  GS
Sbjct:   30 RAYSSTRRVEMNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVTAQLLFLESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPEMRFILPNAK---------------VMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGREVGEIEKVMDRDFYMTAQEAIEFGVVDKILKKRPKEGEGS 239          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A835Z6X3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X3_9STRA)

HSP 1 Score: 270 bits (690), Expect = 5.150e-85
Identity = 144/219 (65.75%), Postives = 170/219 (77.63%), Query Frame = 3
Query:  201 RTYSSTRRLHNYLPMVLETTP-RGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPI----NIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRP 842
            R+ SST      +PMV+E+TP +GER +DIYSRLLRERI+ L GP++E+M+S+VTAQLLFLESEDP KPI    N PGG+VTAGLA+YDTMQYVGP+ICT+CMGQAASM SLLLTAG P MR+ILPNA+               VMLHQPSGGA GMAADIAIVAEEI++TRS LN +Y+ H+G+ V EI KVMDRD +  AQ+AI FGVVD I  KRP
Sbjct:   19 RSISSTAVSRALVPMVVESTPGKGERGFDIYSRLLRERIVFLQGPVSEEMASVVTAQLLFLESEDPEKPISMYINSPGGLVTAGLAIYDTMQYVGPKICTVCMGQAASMASLLLTAGEPGMRYILPNAR---------------VMLHQPSGGAHGMAADIAIVAEEILRTRSVLNNLYSHHTGQPVSEIEKVMDRDTHYDAQQAIAFGVVDAIHEKRP 222          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A7S2SUT0_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUT0_9STRA)

HSP 1 Score: 257 bits (657), Expect = 4.470e-80
Identity = 133/230 (57.83%), Postives = 165/230 (71.74%), Query Frame = 3
Query:  207 YSSTRRLHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQV----GSEDEP 872
            + S  RL   +P+VLE + RGER+YDIYSRLLRERIICLHG +TE+M+S+VTAQLLFLE+EDP +P    IN PGG+V+AGLA+YDTMQY+ P + T+CMGQAASMGSLLL  G    RF LPNAK               +MLHQPSGG  GMA+DIAI AEEI+KTRS LN++Y  H  +E+ ++  VMDRD + +AQEA+DFGV+D ++ KR  E V    G E  P
Sbjct:   15 FRSIARLRGIVPIVLEQSSRGERSYDIYSRLLRERIICLHGAVTEEMASVVTAQLLFLEAEDPDRPCSMYINSPGGLVSAGLAIYDTMQYIRPPVHTVCMGQAASMGSLLLAGGEAGKRFALPNAK---------------IMLHQPSGGTQGMASDIAIAAEEILKTRSSLNKLYVHHCQQELAQVEAVMDRDTWFSAQEALDFGVIDDMLRKREDEPVEEDHGGEGSP 229          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: F0YHM6_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHM6_AURAN)

HSP 1 Score: 251 bits (642), Expect = 2.470e-78
Identity = 125/208 (60.10%), Postives = 160/208 (76.92%), Query Frame = 3
Query:  237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPI----NIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKE 848
            +PMV+E + RGERA+DIYSRLL+ERII L+GP+ ++++S+VTAQLLFLESEDP  PI    N PGG+VTAGLA+YDTMQY+ P + T+CMGQAASMGSLLL AG   MR  LPNA+               +MLHQPSGGA G A+DIAIVA+EI+KTR++LN+IY  H+ + + ++ KVMDRD Y TAQEA+DFGVVD+++  R K+
Sbjct:    2 VPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISMYINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQ---------------IMLHQPSGGAQGQASDIAIVAKEILKTRAKLNDIYVHHTKKPLADVEKVMDRDSYFTAQEAMDFGVVDEVVHPRTKD 194          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: B8BVD6_THAPS (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVD6_THAPS)

HSP 1 Score: 250 bits (639), Expect = 6.280e-78
Identity = 124/205 (60.49%), Postives = 158/205 (77.07%), Query Frame = 3
Query:  237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 839
            +P+VLE+   GERA+DIYSRLLRERIIC+HG +T+ M+SLVTAQLLFLE+E P KP    IN PGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGSLLL  G+   RF LPNA+               +MLHQPSGGA GMA+DI I A EI++TR+ LN++Y  H+GRE+ EI +VMDRD +M  ++A+DFGV+D+++TKR
Sbjct:    2 VPVVLESGTTGERAFDIYSRLLRERIICVHGEVTDSMASLVTAQLLFLEAEAPEKPVYMYINSPGGLVTAGMAMYDTMQYIHPEVHTICMGQAASMGSLLLAGGSAGCRFALPNAR---------------IMLHQPSGGAQGMASDIDIQAREILRTRANLNQLYVHHTGRELEEIERVMDRDTFMDVRQAVDFGVIDEVLTKR 191          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A6U3X7K7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3X7K7_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.230e-77
Identity = 127/205 (61.95%), Postives = 155/205 (75.61%), Query Frame = 3
Query:  237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 839
            +P+VLE T RGERAYDIYSRLLRERIICLHGP+TE M+SLVTAQLLFLESE P +P    IN PGG+V+AGLA+YDTMQY+ PE+ T+CMGQAASMGSLLL  G P  R+ LPNAK               +MLHQPSGGA GMA+DIAI AEEI+KTR+ LN +Y +H+G+ +  + K MDRD +    +A +FGV+D+I+T R
Sbjct:   21 VPIVLEQTSRGERAYDIYSRLLRERIICLHGPVTEDMASLVTAQLLFLESELPDQPLSMYINSPGGLVSAGLAIYDTMQYIKPEVRTMCMGQAASMGSLLLAGGAPGHRYALPNAK---------------IMLHQPSGGAQGMASDIAIQAEEILKTRATLNNLYVRHTGQPLDRVEKAMDRDTWFDVTQAKEFGVIDQILTNR 210          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A7S3KZ88_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZ88_9STRA)

HSP 1 Score: 251 bits (641), Expect = 2.160e-77
Identity = 126/210 (60.00%), Postives = 161/210 (76.67%), Query Frame = 3
Query:  237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQV 854
            +P+VLE+   GER++DIYSRLLRERIIC+HG +T+ M+SLVTAQLLFLESE+P +P    IN PGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGS+LL  G P  RF LPN++               +MLHQPSGGA GMAADI I A EI++TR+ LN I A+H+ + + EI +VMDRDF+M AQ+A DFGV+D I+TKR K+++
Sbjct:   46 VPIVLESGAMGERSFDIYSRLLRERIICVHGEVTDVMASLVTAQLLFLESENPDRPVYMYINSPGGLVTAGMAMYDTMQYIRPEVQTICMGQAASMGSVLLAGGEPGYRFALPNSR---------------IMLHQPSGGAQGMAADIDIQAREILRTRANLNRIMAEHTKQSIEEIERVMDRDFFMDAQQAKDFGVIDHILTKRTKDEI 240          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A6S9KWE2_HETAK (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KWE2_HETAK)

HSP 1 Score: 250 bits (638), Expect = 5.160e-77
Identity = 124/207 (59.90%), Postives = 160/207 (77.29%), Query Frame = 3
Query:  231 NYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 839
            N +PMVLE++ RGERAYDIYSRLLRERII +HGPITEQ++S+VTAQLLFLE+EDP K     IN PGG+VTAG+A+YDTMQ++  ++ TICMGQAASMGSLLL  G P  R  LPNA+               +MLHQPSGGA GMA+DIAI AEEI++ RS LN++Y  H+G+ + +I +VM+RD +  AQ+A++FGV+DK+++KR
Sbjct:   40 NLVPMVLESSNRGERAYDIYSRLLRERIIYVHGPITEQLASVVTAQLLFLEAEDPDKKLYMYINSPGGVVTAGMAIYDTMQFIQSDVATICMGQAASMGSLLLAGGAPGQRSALPNAR---------------IMLHQPSGGAQGMASDIAIQAEEILRIRSSLNQLYQHHTGQALADIERVMERDTFFDAQQALNFGVIDKVLSKR 231          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A2D4BRY0_PYTIN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRY0_PYTIN)

HSP 1 Score: 246 bits (628), Expect = 6.450e-76
Identity = 124/217 (57.14%), Postives = 158/217 (72.81%), Query Frame = 3
Query:  213 STRRLHNYL----PMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKP----INIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 839
            S RRLH +L    PMVLE +PRGER YDIYSRLL+ERI+ +HGP+ + M+SLVTAQLLFLE+E P K     IN PGG+VT+GLA+YDTMQY+ P + T+CMGQAASMG+LLL AG P  R+ LPN++               +M+HQPSGGA GMA+DIAI AEEIIK R+RLN ++  H+G+ +  I K MDRD +M   EA++FG++D I+ KR
Sbjct:    3 SRRRLHTFLNSVVPMVLEQSPRGERVYDIYSRLLKERIVFVHGPVNDSMASLVTAQLLFLEAEHPEKDVYMYINSPGGVVTSGLAIYDTMQYIHPRVNTLCMGQAASMGALLLAAGAPGCRYALPNSR---------------IMVHQPSGGAQGMASDIAIQAEEIIKLRARLNGLFVHHTGKPLKTIEKAMDRDLFMDPPEALEFGIIDSIMNKR 204          
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Match: A0A2E7F7B8_9PROT (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7F7B8_9PROT)

HSP 1 Score: 244 bits (622), Expect = 5.450e-75
Identity = 125/228 (54.82%), Postives = 164/228 (71.93%), Query Frame = 3
Query:  237 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPI----NIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQVGSEDEPRA*DVLGQRGTK 908
            +PMV+ETT RGERAYDIYSRLL+ERII + GPI + +SSL+ AQLLFLESE+P K I    N PGG+VT+GLA+YDTMQY+ P + T+C+GQAASMGSLLL AG    R+ LPNA+               +M+HQPSGGA G A DI I A+EI+  R RLNEIY +H+G+++  I + ++RD YMT ++A DFG+VD+++TKRP+ + G+ED       LG +G K
Sbjct:   13 VPMVVETTNRGERAYDIYSRLLKERIIFVTGPIEDYVSSLICAQLLFLESENPKKEIAFYINSPGGVVTSGLAIYDTMQYIHPPVSTVCIGQAASMGSLLLAAGAEGQRYALPNAR---------------IMVHQPSGGAQGQATDIEIQAKEILSLRKRLNEIYVEHTGQKIDIIEQALERDRYMTPEDAKDFGIVDEVVTKRPEPEEGNED-------LGDKGGK 218          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10212.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNQ5_ECTSI8.430e-11278.67ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z6X3_9STRA5.150e-8565.75ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2SUT0_9STRA4.470e-8057.83ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0YHM6_AURAN2.470e-7860.10ATP-dependent Clp protease proteolytic subunit n=1... [more]
B8BVD6_THAPS6.280e-7860.49ATP-dependent Clp protease proteolytic subunit (Fr... [more]
A0A6U3X7K7_9STRA1.230e-7761.95ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S3KZ88_9STRA2.160e-7760.00ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6S9KWE2_HETAK5.160e-7759.90ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A2D4BRY0_PYTIN6.450e-7657.14ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A2E7F7B8_9PROT5.450e-7554.82ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10212contigF-distichus_contig10212:3979..6894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.9
Seed ortholog evalue5.4e-91
Seed eggNOG ortholog2880.D7FNQ5
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0740@1,KOG0840@2759
Ec32 ortholog descriptionATP-dependent Clp protease, proteolytic subunit ClpP
Ec32 orthologEc-01_004640.1
EC3.4.21.92
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons5
Model size1441
Cds size798
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.6052277-UTR-F-distichus_contig10212:3978..45381622928935.6052277-UTR-F-distichus_contig10212:3978..4538Fucus distichus monoicousUTRF-distichus_contig10212 3979..4538 -
1690885073.982596-UTR-F-distichus_contig10212:3978..45381690885073.982596-UTR-F-distichus_contig10212:3978..4538Fucus distichus monoicousUTRF-distichus_contig10212 3979..4538 -
1622928935.6843655-UTR-F-distichus_contig10212:6811..68941622928935.6843655-UTR-F-distichus_contig10212:6811..6894Fucus distichus monoicousUTRF-distichus_contig10212 6812..6894 -
1690885074.043463-UTR-F-distichus_contig10212:6811..68941690885074.043463-UTR-F-distichus_contig10212:6811..6894Fucus distichus monoicousUTRF-distichus_contig10212 6812..6894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.617386-CDS-F-distichus_contig10212:4538..46791622928935.617386-CDS-F-distichus_contig10212:4538..4679Fucus distichus monoicousCDSF-distichus_contig10212 4539..4679 -
1690885074.0010803-CDS-F-distichus_contig10212:4538..46791690885074.0010803-CDS-F-distichus_contig10212:4538..4679Fucus distichus monoicousCDSF-distichus_contig10212 4539..4679 -
1622928935.6287158-CDS-F-distichus_contig10212:5060..51831622928935.6287158-CDS-F-distichus_contig10212:5060..5183Fucus distichus monoicousCDSF-distichus_contig10212 5061..5183 -
1690885074.0086734-CDS-F-distichus_contig10212:5060..51831690885074.0086734-CDS-F-distichus_contig10212:5060..5183Fucus distichus monoicousCDSF-distichus_contig10212 5061..5183 -
1622928935.6411247-CDS-F-distichus_contig10212:5700..59051622928935.6411247-CDS-F-distichus_contig10212:5700..5905Fucus distichus monoicousCDSF-distichus_contig10212 5701..5905 -
1690885074.0162315-CDS-F-distichus_contig10212:5700..59051690885074.0162315-CDS-F-distichus_contig10212:5700..5905Fucus distichus monoicousCDSF-distichus_contig10212 5701..5905 -
1622928935.6536508-CDS-F-distichus_contig10212:6282..63891622928935.6536508-CDS-F-distichus_contig10212:6282..6389Fucus distichus monoicousCDSF-distichus_contig10212 6283..6389 -
1690885074.0241413-CDS-F-distichus_contig10212:6282..63891690885074.0241413-CDS-F-distichus_contig10212:6282..6389Fucus distichus monoicousCDSF-distichus_contig10212 6283..6389 -
1622928935.6678345-CDS-F-distichus_contig10212:6589..68111622928935.6678345-CDS-F-distichus_contig10212:6589..6811Fucus distichus monoicousCDSF-distichus_contig10212 6590..6811 -
1690885074.0341234-CDS-F-distichus_contig10212:6589..68111690885074.0341234-CDS-F-distichus_contig10212:6589..6811Fucus distichus monoicousCDSF-distichus_contig10212 6590..6811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10212.178.1prot_F-distichus_contig10212.178.1Fucus distichus monoicouspolypeptideF-distichus_contig10212 4539..6811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10212.178.1

>prot_F-distichus_contig10212.178.1 ID=prot_F-distichus_contig10212.178.1|Name=mRNA_F-distichus_contig10212.178.1|organism=Fucus distichus monoicous|type=polypeptide|length=266bp
MTLRSLFQRNLVHVEAGIKFSRGTMAAVVGDPCSSRRRTRTYSSTRRLHN
YLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLE
SEDPVKPINIPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTA
GTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAE
EIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIIT
KRPKEQVGSEDEPRA*
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mRNA from alignment at F-distichus_contig10212:3979..6894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10212.178.1 ID=mRNA_F-distichus_contig10212.178.1|Name=mRNA_F-distichus_contig10212.178.1|organism=Fucus distichus monoicous|type=mRNA|length=2916bp|location=Sequence derived from alignment at F-distichus_contig10212:3979..6894- (Fucus distichus monoicous)
AAACCTCAACGTCAAATTATGTCGATCGACCTCCAACATTCTCGCAACAT ACAGCCTTCCTCAGGAGAGACTATCTGTAAAGCATGACGCTACGGTCGTT ATTTCAACGGAATCTTGTGCACGTGGAGGCTGGCATTAAATTTTCTAGGG GTACCATGGCCGCCGTAGTAGGTGATCCCTGCAGCTCCCGAAGACGAACC AGAACGTACAGCAGCACACGCCGGTTGCACAACTATTTGCCCATGGTCCT GGAGACGACCCCGAGGGGAGAGCGTGCGTACGACATCTACTCCAGGCTTC TCAGGGTGATCCAATGGAAGATTCCCCTGGTTATTTCTAGGTCCGGGTAT GGACTCGTACCGGCATTTCTATTTTTACCTCTCTAACACATACCCGGTCC GAGCCCTGCGTCAAGTTGACGTTGCAGCATCATCGTTCACAAACATGCTT TACAGCCACCGCACGACACCCGTCCTCGTTCGCTGGTTCACCTCTCGGCG CTCAGGAAAGGATCATCTGTTTGCACGGGCCCATCACAGAGCAGATGTCG TCGCTGGTAACAGCACAGCTCCTGTTCCTAGAATCAGAAGACCCCGTGAA ACCCATCAACATGTACATTAACAGGCGAGGAAAGGACATCCAAGTATAGA TATATTCGGAACATGGTTATGTCTCGTATTTACAACAGAAGACGATCTCG TCACTCACTCCATCGTGAGTTCTTTGTTCTGAACTAAATCGCTGGTACTT TCCGCACACACGCGTCACGGACAAGCTCATACTATACTCGAAACTCCAAG ACAACACTCATACGGGTTGTCTGCCTCAGATGGCCGAGTTCGCTTGCTTC CCTACATTACAGCCATAGTTGTACCTCAGAGTTTTGTACGAAATTTTGCT CCCCAGCTGACAACGTTGAAGTCCTTTCTCACGCCGCGCTATCGATGCCC TGCCGCTGGGTGTGTGTGGGGGGGGTAATTATGCGTCAGTCCTGGCGGCA TCGTAACAGCGGGTTTGGCGGTGTACGACACGATGCAGTATGTCGGCCCA GAGATATGTACAATTTGTATGGGGCAGGCGGCGTCTATGGGATCATTGCT CCTGACCGCGGGGACACCGAACATGCGTTTCATCTTACCCAACGCGAAGG CGAGAGAGAGAGGGCAAAGGAGGGGAGGGGAGAGGAAGGGAGGCGTCTCT CGGGGAGCTTGCGAGTAGCGCGTCGTGGCCGTTGAGCGATGAAAATAATT TGGTCCCTAGGCTGTGACGGTTAGGTGCCCCGATGGCTTAGCCTTTTATT ATTTTTCCGTGGATTCACAACAAAGAGGTAAGGGGAATGTGACTCAAGCG CTGGCCATTTGTTGGTTTGCATTTCGGACGCGTGGTGTTCACTCGGGCGT GTCGCAGCGATAGCCTCGTAGGCGAGGTAGCCGCATGGTGCTGAACAGCC AATACGGACAACTTTTGTCTCGCTTGTATTTATCAGAGGAATCAGGGGTT TATGAAAGTACTAAATTAACATACCGGTATGCAGTATATACAAACATCAC GCTCGGTGAAAAGTCCGGCACAGGCATGAAAACGCCTCCTTGTCGTGTGA GCTCCTGGTTCCGCGAGTGCATGTGAGAAAGTAATCCATACTCCGGTATT TCACGCGTTGGAGAAAAAAAATGAACAATCAGCTCTTTTATCCGAACCGA AACTCCTTCAGGTTATGTTGCATCAGCCTTCCGGTGGGGCGAGCGGGATG GCGGCCGACATCGCAATCGTGGCGGAGGAAATCATCAAGACTAGATCGCG CCTGAACGAGATATATGCCCAACATTCGGGGCGGGTAAGCACTCGCATAC CATGACCTAGCATCATTGATCGTTCTGTAAAATTTTAAGTGCTGTAGATG GCGTTTGTTGGCATCCCGTGCGAGGGAGCACCCCATTCCTTCCGTGTTAC ATATTCTCAAAACTCTCAAAACACTTAAAAATATATATCTTAGAGCATCG TCAATAACAGCCCACAATTGCGGCGGTGCTTATCCCCTCTGATGTCTCAG CACTGCATCCGTTGCACGTGCTCGGCGAAGCCGCGGTCGCGGTAGCGATA TTGTTACGTCGGGACATCTCTCCCTCGTGTGGTTCGTGTGACGGTGTATT TCACGCGTGCACCGCGATCGTTTCTGTTTCGTTTCTTTTGCTGTTTCTTA TCCCGGTGATCGAAGGAGGTTGTGGAAATCGCGAAGGTGATGGATCGCGA CTTCTACATGACCGCCCAGGAAGCGATCGACTTTGGCGTGGTTGATAAGA TAATTACGAAGCGACCGAAAGAGCAAGTGGGTTCCGAAGACGAACCAAGG GCGTAGGACGTTTTGGGCCAAAGGGGTACGAAGTAATCACGTGTACATTT GGTACGGGCTCAACTCAGATACTCAACAGCGACCAAAACTTTGCGTTGAC ATTGCAAGTGGTCCCCGAGACTCTCTTACATTCTCTGCGTGCGAGGTAGC CCGGCTCCCAATGCTATCTGTCACCCAGACCGTTTCAAGGAACAAGATAG AGTCGAGCGGCGATATCTCACTGTCGGGACTTCATTATTTTTTGACGAAA GCACCGTGTTCGGGTGTGTTTTAGGTCGGGTCCACCATGGATATGTTGAT ACCGAAATACAGTAGATTGATGTGAACAGCCACGAACGAAGGGGTTGGTT GGACGAAGTGGGGCACACATTGCAGATGCTATGCTATGCTCTCTAAACTC TAAGCATGTTGCAAAGGATACATGAACTGTATTATCAATATTGTCAAATT GGCACCTACTACTGTAGACTTATGGTTTCTAAAAATATACCAGTACGACG TAGGTCCTTTTCTCCACATCAAACGTCCTTTTCTAGTATTAACTCTTGTG TTAACGTTCGAAAGTG
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Coding sequence (CDS) from alignment at F-distichus_contig10212:3979..6894-

>mRNA_F-distichus_contig10212.178.1 ID=mRNA_F-distichus_contig10212.178.1|Name=mRNA_F-distichus_contig10212.178.1|organism=Fucus distichus monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at F-distichus_contig10212:3979..6894- (Fucus distichus monoicous)
ATGACGCTACGGTCGTTATTTCAACGGAATCTTGTGCACGTGGAGGCTGG
CATTAAATTTTCTAGGGGTACCATGGCCGCCGTAGTAGGTGATCCCTGCA
GCTCCCGAAGACGAACCAGAACGTACAGCAGCACACGCCGGTTGCACAAC
TATTTGCCCATGGTCCTGGAGACGACCCCGAGGGGAGAGCGTGCGTACGA
CATCTACTCCAGGCTTCTCAGGATGACGCTACGGTCGTTATTTCAACGGA
ATCTTGTGCACGTGGAGGCTGGCATTAAATTTTCTAGGGGTACCATGGCC
GCCGTAGTAGGTGATCCCTGCAGCTCCCGAAGACGAACCAGAACGTACAG
CAGCACACGCCGGTTGCACAACTATTTGCCCATGGTCCTGGAGACGACCC
CGAGGGGAGAGCGTGCGTACGACATCTACTCCAGGCTTCTCAGGGAAAGG
ATCATCTGTTTGCACGGGCCCATCACAGAGCAGATGTCGTCGCTGGTAAC
AGCACAGCTCCTGTTCCTAGAATCAGAAGACCCCGTGAAACCCATCAACA
TGAAAGGATCATCTGTTTGCACGGGCCCATCACAGAGCAGATGTCGTCGC
TGGTAACAGCACAGCTCCTGTTCCTAGAATCAGAAGACCCCGTGAAACCC
ATCAACATTCCTGGCGGCATCGTAACAGCGGGTTTGGCGGTGTACGACAC
GATGCAGTATGTCGGCCCAGAGATATGTACAATTTGTATGGGGCAGGCGG
CGTCTATGGGATCATTGCTCCTGACCGCGGGGACACCGAACATGCGTTTC
ATCTTACCCAACGCGAAGGCGAGAGAGAGAGGGCAAAGGAGGGGAGGGGA
GAGGAAGGGAGGCTCCTGGCGGCATCGTAACAGCGGGTTTGGCGGTGTAC
GACACGATGCAGTATGTCGGCCCAGAGATATGTACAATTTGTATGGGGCA
GGCGGCGTCTATGGGATCATTGCTCCTGACCGCGGGGACACCGAACATGC
GTTTCATCTTACCCAACGCGAAGGCGAGAGAGAGAGGGCAAAGGAGGGGA
GGGGAGAGGAAGGGAGGCGTTATGTTGCATCAGCCTTCCGGTGGGGCGAG
CGGGATGGCGGCCGACATCGCAATCGTGGCGGAGGAAATCATCAAGACTA
GATCGCGCCTGAACGAGATATATGCCCAACATTCGGGGCGGGTTATGTTG
CATCAGCCTTCCGGTGGGGCGAGCGGGATGGCGGCCGACATCGCAATCGT
GGCGGAGGAAATCATCAAGACTAGATCGCGCCTGAACGAGATATATGCCC
AACATTCGGGGCGGGAGGTTGTGGAAATCGCGAAGGTGATGGATCGCGAC
TTCTACATGACCGCCCAGGAAGCGATCGACTTTGGCGTGGTTGATAAGAT
AATTACGAAGCGACCGAAAGAGCAAGTGGGTTCCGAAGACGAACCAAGGG
CGTAGGAGGTTGTGGAAATCGCGAAGGTGATGGATCGCGACTTCTACATG
ACCGCCCAGGAAGCGATCGACTTTGGCGTGGTTGATAAGATAATTACGAA
GCGACCGAAAGAGCAAGTGGGTTCCGAAGACGAACCAAGGGCGTAG
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