mRNA_F-distichus_contig102102.177.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102102.177.1
Unique NamemRNA_F-distichus_contig102102.177.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102102.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102102contigF-distichus_contig102102:1195..1715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.5568018-CDS-F-distichus_contig102102:1194..12731622928935.5568018-CDS-F-distichus_contig102102:1194..1273Fucus distichus monoicousCDSF-distichus_contig102102 1195..1273 -
1690885073.95761-CDS-F-distichus_contig102102:1194..12731690885073.95761-CDS-F-distichus_contig102102:1194..1273Fucus distichus monoicousCDSF-distichus_contig102102 1195..1273 -
1622928935.5738847-CDS-F-distichus_contig102102:1545..17151622928935.5738847-CDS-F-distichus_contig102102:1545..1715Fucus distichus monoicousCDSF-distichus_contig102102 1546..1715 -
1690885073.9684274-CDS-F-distichus_contig102102:1545..17151690885073.9684274-CDS-F-distichus_contig102102:1545..1715Fucus distichus monoicousCDSF-distichus_contig102102 1546..1715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102102.177.1prot_F-distichus_contig102102.177.1Fucus distichus monoicouspolypeptideF-distichus_contig102102 1195..1715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102102.177.1

>prot_F-distichus_contig102102.177.1 ID=prot_F-distichus_contig102102.177.1|Name=mRNA_F-distichus_contig102102.177.1|organism=Fucus distichus monoicous|type=polypeptide|length=83bp
MNTRLCSEAGAAEARGRQASQDAAMALEKRVVEVETRVRGCEVLAVRADD
PKSVSTRVEGLASELRDLGRRLDRKADASEMEK
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mRNA from alignment at F-distichus_contig102102:1195..1715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102102.177.1 ID=mRNA_F-distichus_contig102102.177.1|Name=mRNA_F-distichus_contig102102.177.1|organism=Fucus distichus monoicous|type=mRNA|length=521bp|location=Sequence derived from alignment at F-distichus_contig102102:1195..1715- (Fucus distichus monoicous)
ATGAACACCAGGCTGTGCTCGGAAGCGGGGGCCGCCGAGGCGAGGGGGAG
GCAGGCGTCGCAAGACGCGGCGATGGCCTTAGAGAAGCGTGTGGTCGAGG
TAGAGACGAGGGTGCGGGGATGCGAAGTCCTCGCCGTGAGGGCGGACGAC
CCTAAATCGGTCTCCACGAGGTGAGCGATGAACCCACAGACGGGGTGCGT
GGAACGGGATTCTCGCGACGGGATACCGCGTGTGATTTCGCGTAAGATGA
GTATGCTCGCGATAATGTCGGGCGATGGGCGGTTTTTCTTTTTAGCGATT
AGGCAGTGACCGCAGCGTTTAATTTTTGTCACCCAATAGGTTGAGCAGAT
GACCGTCAGACAAGACGAGCGATTGCGGCGATGACGTGTGCTTCCGCCCA
TTAATGTATCTATATATCTATATATATATGATTGGACGAAAGGGTGGAAG
GGCTGGCGTCGGAGCTCCGCGACCTCGGAAGGCGGCTGGATCGCAAGGCC
GATGCCTCAGAGATGGAGAAA
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Coding sequence (CDS) from alignment at F-distichus_contig102102:1195..1715-

>mRNA_F-distichus_contig102102.177.1 ID=mRNA_F-distichus_contig102102.177.1|Name=mRNA_F-distichus_contig102102.177.1|organism=Fucus distichus monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at F-distichus_contig102102:1195..1715- (Fucus distichus monoicous)
ATGAACACCAGGCTGTGCTCGGAAGCGGGGGCCGCCGAGGCGAGGGGGAG
GCAGGCGTCGCAAGACGCGGCGATGGCCTTAGAGAAGCGTGTGGTCGAGG
TAGAGACGAGGGTGCGGGGATGCGAAGTCCTCGCCGTGAGGGCGGACGAC
CCTAAATCGGTCTCCACGAGATGAACACCAGGCTGTGCTCGGAAGCGGGG
GCCGCCGAGGCGAGGGGGAGGCAGGCGTCGCAAGACGCGGCGATGGCCTT
AGAGAAGCGTGTGGTCGAGGTAGAGACGAGGGTGCGGGGATGCGAAGTCC
TCGCCGTGAGGGCGGACGACCCTAAATCGGTCTCCACGAGGGTGGAAGGG
CTGGCGTCGGAGCTCCGCGACCTCGGAAGGCGGCTGGATCGCAAGGCCGA
TGCCTCAGAGATGGAGAAAGGTGGAAGGGCTGGCGTCGGAGCTCCGCGAC
CTCGGAAGGCGGCTGGATCGCAAGGCCGATGCCTCAGAGATGGAGAAA
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