mRNA_F-distichus_contig102099.174.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102099.174.1
Unique NamemRNA_F-distichus_contig102099.174.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102099.174.1 vs. uniprot
Match: A0A0F9SG51_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9SG51_9ZZZZ)

HSP 1 Score: 49.7 bits (117), Expect = 1.460e-5
Identity = 31/91 (34.07%), Postives = 46/91 (50.55%), Query Frame = 1 
Query:   52 IHKYVQNYN---GKESLWMNPYQAHFP--RTEANTLFENFIKRNDVLLHALGSLTDKVLGCWCEPLYDSNGEVITLKECHGNILIELYNEY 309
            ++K  +NY+   G+ S W NP+       R E    ++ +      LL +L  L +KVLGC+C+PL            CHG++LIEL  EY
Sbjct:    6 VNKRKENYDVYIGRGSKWGNPFIIGIDGDREEVIKKYKAWALETPYLLRSLVELENKVLGCYCKPL-----------ACHGDVLIELIEEY 85
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BLAST of mRNA_F-distichus_contig102099.174.1 vs. uniprot
Match: A0A481YWB6_9VIRU (Uncharacterized protein n=1 Tax=Marseillevirus LCMAC103 TaxID=2506604 RepID=A0A481YWB6_9VIRU)

HSP 1 Score: 51.2 bits (121), Expect = 4.230e-5
Identity = 26/80 (32.50%), Postives = 39/80 (48.75%), Query Frame = 1 
Query:   82 KESLWMNPYQAHFPRTEANTLFENFIKRNDVLLHALGSLTDKVLGCWCEPLYDSNGEVITLKECHGNILIELYNEYVTTR 321
            K+S W NP+       ++  ++   +     L+ AL  L   VLGCWC+  +           CHG++L+ELY EYV  R
Sbjct:  652 KKSKWANPFSLKKHGLDSLEMYRQHVLARPDLVAALPELGGHVLGCWCKGRH----------ACHGDVLVELYAEYVVRR 721
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102099.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0F9SG51_9ZZZZ1.460e-534.07Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A481YWB6_9VIRU4.230e-532.50Uncharacterized protein n=1 Tax=Marseillevirus LCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102099contigF-distichus_contig102099:292..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score62.0
Seed ortholog evalue2e-07
Seed eggNOG ortholog400682.PAC_15718433
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4326)
EggNOG OGs2E4IP@1,2SBEV@2759,3AR43@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.3673658-CDS-F-distichus_contig102099:291..6241622928935.3673658-CDS-F-distichus_contig102099:291..624Fucus distichus monoicousCDSF-distichus_contig102099 292..624 -
1690885073.868556-CDS-F-distichus_contig102099:291..6241690885073.868556-CDS-F-distichus_contig102099:291..624Fucus distichus monoicousCDSF-distichus_contig102099 292..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102099.174.1prot_F-distichus_contig102099.174.1Fucus distichus monoicouspolypeptideF-distichus_contig102099 292..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102099.174.1

>prot_F-distichus_contig102099.174.1 ID=prot_F-distichus_contig102099.174.1|Name=mRNA_F-distichus_contig102099.174.1|organism=Fucus distichus monoicous|type=polypeptide|length=111bp
TFKAWIEDPKNVYIGPHIHKYVQNYNGKESLWMNPYQAHFPRTEANTLFE
NFIKRNDVLLHALGSLTDKVLGCWCEPLYDSNGEVITLKECHGNILIELY
NEYVTTRCFA*
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mRNA from alignment at F-distichus_contig102099:292..624-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102099.174.1 ID=mRNA_F-distichus_contig102099.174.1|Name=mRNA_F-distichus_contig102099.174.1|organism=Fucus distichus monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at F-distichus_contig102099:292..624- (Fucus distichus monoicous)
ACTTTCAAGGCATGGATTGAAGATCCCAAGAATGTATATATTGGACCTCA
CATTCACAAATATGTACAGAATTATAATGGAAAGGAAAGCTTGTGGATGA
ATCCTTACCAAGCTCACTTTCCTAGGACTGAAGCCAATACACTCTTTGAA
AACTTTATCAAAAGGAATGATGTTTTGCTGCATGCACTCGGTTCATTGAC
AGACAAAGTACTAGGATGCTGGTGTGAACCTCTCTATGATTCCAATGGAG
AAGTGATTACTCTCAAGGAATGTCATGGAAATATATTGATAGAGTTATAT
AATGAATATGTAACAACTCGTTGCTTCGCTTAG
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Coding sequence (CDS) from alignment at F-distichus_contig102099:292..624-

>mRNA_F-distichus_contig102099.174.1 ID=mRNA_F-distichus_contig102099.174.1|Name=mRNA_F-distichus_contig102099.174.1|organism=Fucus distichus monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at F-distichus_contig102099:292..624- (Fucus distichus monoicous)
ACTTTCAAGGCATGGATTGAAGATCCCAAGAATGTATATATTGGACCTCA
CATTCACAAATATGTACAGAATTATAATGGAAAGGAAAGCTTGTGGATGA
ATCCTTACCAAGCTCACTTTCCTAGGACTGAAGCCAATACACTCTTTGAA
AACTTTATCAAAAGGAATGATGTTTTGCTGCATGCACTCGGTTCATTGAC
AGACAAAGTACTAGGATGCTGGTGTGAACCTCTCTATGATTCCAATGGAG
AAGTGATTACTCTCAAGGAATGTCATGGAAATATATTGATAGAGTTATAT
AATGAATATGTAACAACTCGTTGCTTCGCTTAGACTTTCAAGGCATGGAT
TGAAGATCCCAAGAATGTATATATTGGACCTCACATTCACAAATATGTAC
AGAATTATAATGGAAAGGAAAGCTTGTGGATGAATCCTTACCAAGCTCAC
TTTCCTAGGACTGAAGCCAATACACTCTTTGAAAACTTTATCAAAAGGAA
TGATGTTTTGCTGCATGCACTCGGTTCATTGACAGACAAAGTACTAGGAT
GCTGGTGTGAACCTCTCTATGATTCCAATGGAGAAGTGATTACTCTCAAG
GAATGTCATGGAAATATATTGATAGAGTTATATAATGAATATGTAACAAC
TCGTTGCTTCGCTTAG
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