mRNA_F-distichus_contig102097.173.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102097.173.1
Unique NamemRNA_F-distichus_contig102097.173.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: D7G3W6_ECTSI (Protein disulfide isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W6_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.800e-30
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 QVNEKNVMTLDASTLDAALRD-----NKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIP--LAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRPRP 345
            +V+E +V+ LD S +D AL D        L++EFFAPWCGNC RLRPR+ARAAD L  EG P  LAK+DCT NE LC + PW+I +YPT+ + R G+L  Y+   E + ++ +MR+   P P
Sbjct:  292 EVDESSVLVLDESNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKIDCTTNEDLCASEPWQITKYPTIMLRRFGELYEYDQAREARELVRYMRKAAEPAP 413          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: I1BIV3_RHIO9 (Protein disulfide-isomerase n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BIV3_RHIO9)

HSP 1 Score: 100 bits (250), Expect = 1.850e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   10 EKNVMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRP 339
            + +V++L   T D  + +  L++VEFFAPWCG+CK L P +  AA  L  + +PLAKVDCTENE+LC  +  ++  YPTL V RKG+ T Y+G  +   I+S+M++   P
Sbjct:   25 DSDVLSLTDKTFDENVLNQDLMLVEFFAPWCGHCKALAPEYEIAATQLKEKNVPLAKVDCTENESLCQKH--EVRGYPTLKVFRKGESTDYKGPRKADGIVSYMQKQTLP 132          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: I1BM75_RHIO9 (Protein disulfide-isomerase n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BM75_RHIO9)

HSP 1 Score: 100 bits (249), Expect = 2.590e-22
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   10 EKNVMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRP 339
            E +V++L   T D  + +  L++VEFFAPWCG+CK L P +  AA  L  + IPLAKVDCTENE LC    + +  +PTL V RKG+ T Y G  +   IIS+M + + P
Sbjct:   25 ESDVLSLTNKTFDENVMNQDLMLVEFFAPWCGHCKSLAPEYEVAATALKEKDIPLAKVDCTENEDLC--QKYGVMGFPTLKVFRKGETTDYNGPRKADGIISYMHKQSLP 132          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: A0A163MVG7_ABSGL (Protein disulfide-isomerase n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163MVG7_ABSGL)

HSP 1 Score: 99.8 bits (247), Expect = 5.090e-22
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   10 EKNVMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRP 339
            + +V++L        + D  L++VEFFAPWCG+CK L P +  AA  L    IPLAKVDCTENEALC  +  K+  YPTL V RKG+ + Y G  ++  I+S+M++ N P
Sbjct:   25 DSDVLSLTDKNFKDEVLDKDLMLVEFFAPWCGHCKALAPEYELAATELKGN-IPLAKVDCTENEALCQEH--KVQGYPTLKVFRKGESSEYNGARKKDGIVSYMKKQNLP 131          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: A0A367KST1_RHIST (Protein disulfide-isomerase n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KST1_RHIST)

HSP 1 Score: 99.0 bits (245), Expect = 8.970e-22
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   10 EKNVMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRP 339
            + +V++L   T D  + +  L++VEFFAPWCG+CK L P +  AA  L  + IP+AKVDCTENE LC  +  +I  YPTL V RKG  T Y+G  +   I+S+M++   P
Sbjct:   25 DSDVLSLTGKTFDENVLNQDLMLVEFFAPWCGHCKALAPEYEIAATQLKEKNIPIAKVDCTENEELCQKH--EIRGYPTLKVFRKGDPTDYKGARKADGIVSYMQKQALP 132          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: A0A139AGV2_GONPJ (Protein disulfide-isomerase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AGV2_GONPJ)

HSP 1 Score: 99.0 bits (245), Expect = 9.110e-22
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   10 EKNVMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMRE 327
            E +V+ L  S  + +++D K+++VEF+APWCG+CK L P + +AA  L + GIPLAKVDCT  E +C  +  K   YPTL V R G  T Y G  +   I+S+M++
Sbjct:   30 ESDVLVLTKSNFEESVKDEKIILVEFYAPWCGHCKALAPEYEKAATSLKSNGIPLAKVDCTAEEEVCSEHGVK--GYPTLKVFRSGSPTDYNGARQADGIVSYMKK 133          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: A0A0K6FVD9_9AGAM (Protein disulfide-isomerase n=4 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FVD9_9AGAM)

HSP 1 Score: 99.0 bits (245), Expect = 9.650e-22
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    4 VNEKNVMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRP 339
            V+  +V+ L+ ST  A +    L++VEFFAPWCG+CK L P++  AA  L   GI LAKVDCTEN  LC  N   +  YPTL V R GK   Y G  +   I+S+M++ + P
Sbjct:   18 VSASDVLDLNNSTFTATVEGEDLILVEFFAPWCGHCKALAPQYEEAATTLKAAGIKLAKVDCTENADLCQANG--VGGYPTLKVFRNGKHKEYSGPRKADGIVSYMKKQSLP 127          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: A0A6P4Z372_BRABE (Protein disulfide-isomerase n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z372_BRABE)

HSP 1 Score: 98.2 bits (243), Expect = 2.160e-21
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   19 VMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRP 339
            V+TL     D  + DN + +VEF+APWCG+CK+L P + +AA VLS +GI L KVD T+   L     + +  YPTL + RKGK   Y+G  E + I+SHM E + P
Sbjct:  189 VVTLTEDNFDEFVNDNAITLVEFYAPWCGHCKKLAPEYEKAAQVLSRDGILLGKVDATQESDLA--KRFDVSGYPTLKIFRKGKAYEYKGPREERGIVSHMIEQSGP 293          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: A0A197K4K3_9FUNG (Protein disulfide-isomerase n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K4K3_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 3.100e-21
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   10 EKNVMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRP 339
            E +V+ L A    A++ D KL++VEFFAPWCG+CK L P +  AA  L   GIP+AKVDCT    LC      +  YPTL V R+G  + Y+G  +  AI+S++++ N P
Sbjct:   24 ESDVIDLTAKNFAASVSDEKLMLVEFFAPWCGHCKALAPEYEIAATQLKEHGIPIAKVDCTVETDLCQEQG--VQGYPTLKVFREGTPSDYQGARKADAIVSYLKKQNLP 131          
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Match: A0A2T0FC20_9ASCO (Protein disulfide-isomerase n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FC20_9ASCO)

HSP 1 Score: 97.4 bits (241), Expect = 3.160e-21
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   16 NVMTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIPLAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHMREMNRP 339
            +V+ L++   ++ L +N L++VEF+APWCG+CK L P + +AA  L +E I LAKVDCTEN+ALC    + I  YPTL V R    + + G  +  +I+S MR  N P
Sbjct:   26 DVLVLNSENFESVLAENPLVLVEFYAPWCGHCKNLAPEYEKAATTLKDESIVLAKVDCTENQALCAN--YNIAGYPTLKVFRGESNSDFRGGRQVDSIVSAMRRQNTP 131          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102097.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3W6_ECTSI3.800e-3049.18Protein disulfide isomerase n=1 Tax=Ectocarpus sil... [more]
I1BIV3_RHIO91.850e-2244.55Protein disulfide-isomerase n=1 Tax=Rhizopus delem... [more]
I1BM75_RHIO92.590e-2246.36Protein disulfide-isomerase n=1 Tax=Rhizopus delem... [more]
A0A163MVG7_ABSGL5.090e-2246.36Protein disulfide-isomerase n=1 Tax=Absidia glauca... [more]
A0A367KST1_RHIST8.970e-2245.45Protein disulfide-isomerase n=1 Tax=Rhizopus stolo... [more]
A0A139AGV2_GONPJ9.110e-2244.34Protein disulfide-isomerase n=1 Tax=Gonapodya prol... [more]
A0A0K6FVD9_9AGAM9.650e-2245.54Protein disulfide-isomerase n=4 Tax=Rhizoctonia so... [more]
A0A6P4Z372_BRABE2.160e-2144.86Protein disulfide-isomerase n=1 Tax=Branchiostoma ... [more]
A0A197K4K3_9FUNG3.100e-2144.55Protein disulfide-isomerase n=1 Tax=Linnemannia el... [more]
A0A2T0FC20_9ASCO3.160e-2144.44Protein disulfide-isomerase n=1 Tax=Wickerhamiella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102097contigF-distichus_contig102097:115..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog2880.D7G3W6
KEGG koko:K09580
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
Ec32 ortholog descriptionprotein disulfide isomerase
Ec32 orthologEc-16_004640.1
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Exons2
Model size369
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102097.173.1prot_F-distichus_contig102097.173.1Fucus distichus monoicouspolypeptideF-distichus_contig102097 136..1069 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.2937403-UTR-F-distichus_contig102097:114..1351622928935.2937403-UTR-F-distichus_contig102097:114..135Fucus distichus monoicousUTRF-distichus_contig102097 115..135 +
1690885073.8372548-UTR-F-distichus_contig102097:114..1351690885073.8372548-UTR-F-distichus_contig102097:114..135Fucus distichus monoicousUTRF-distichus_contig102097 115..135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.3127837-CDS-F-distichus_contig102097:135..2941622928935.3127837-CDS-F-distichus_contig102097:135..294Fucus distichus monoicousCDSF-distichus_contig102097 136..294 +
1690885073.850761-CDS-F-distichus_contig102097:135..2941690885073.850761-CDS-F-distichus_contig102097:135..294Fucus distichus monoicousCDSF-distichus_contig102097 136..294 +
1622928935.3303125-CDS-F-distichus_contig102097:880..10691622928935.3303125-CDS-F-distichus_contig102097:880..1069Fucus distichus monoicousCDSF-distichus_contig102097 881..1069 +
1690885073.859007-CDS-F-distichus_contig102097:880..10691690885073.859007-CDS-F-distichus_contig102097:880..1069Fucus distichus monoicousCDSF-distichus_contig102097 881..1069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102097.173.1

>prot_F-distichus_contig102097.173.1 ID=prot_F-distichus_contig102097.173.1|Name=mRNA_F-distichus_contig102097.173.1|organism=Fucus distichus monoicous|type=polypeptide|length=116bp
MTLDASTLDAALRDNKLLMVEFFAPWCGNCKRLRPRFARAADVLSNEGIP
LAKVDCTENEALCLTNPWKIDRYPTLYVSRKGKLTLYEGKPERKAIISHM
REMNRPRPQVRDKRP*
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mRNA from alignment at F-distichus_contig102097:115..1069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102097.173.1 ID=mRNA_F-distichus_contig102097.173.1|Name=mRNA_F-distichus_contig102097.173.1|organism=Fucus distichus monoicous|type=mRNA|length=955bp|location=Sequence derived from alignment at F-distichus_contig102097:115..1069+ (Fucus distichus monoicous)
CAGGTGAACGAGAAGAACGTGATGACACTGGATGCGTCGACCCTGGACGC CGCCCTGAGGGACAACAAGCTCTTGATGGTGGAGTTCTTTGCGCCCTGGT GCGGCAACTGCAAGCGCCTAAGGCCGCGTTTTGCGAGGGCGGCAGACGTT CTCTCGAATGAAGGCATTCCCCTCGCCAAGGTAACTCTGCCATGGGCTGC CTGCGGGATGCACGCCCTCTGTGTTCGCTTGCGGGGAGTGTTGTGTGTGT GTGTGTGTATTTATTATATTGCACGTAACCGCGCAATCCGACCCTGCCAT CCTAGTTATTCTATGCCACTCCCATTGATCCTCCCAAGGGGAGATCAGTA ATACTAATTACGAAAACCTCTCATCGGACACGACTAAGAGGACGCACACT TTGTGCTTCTGTGTGTGTTTTTATTCAAATGCACGTGATCGCGTAATCCG GCCCGGCCATCCCAATCATTGTATGCTACTCACATTGGTCCTCTCAAGAG GGGCGTCAGTGATGTTTGTCACGAAAACCTCTGATCAGACGCGACAAGTG TGTGTGTGTGTATCTGTGTATGTATGTGTTTGTACATGTATGTATGTGTT TGTACGTGCATGTATTTGTTTGTGCATGTGTGTGTATACGTGTGAGTATG TGTTTGTGTGTATGTGTATGTCATTGTTTTCGTTTTTTAAATCTTTTCCC TTGCCGTGTGTTTTCGGAATCGCCGCCGCCGCCGCCGCCTCTGCCGATCG CCATGTGGCACCACAGGTAGACTGCACCGAGAACGAGGCCCTCTGCCTCA CCAACCCTTGGAAGATCGACCGGTACCCCACCCTGTACGTTTCGCGGAAG GGCAAGCTGACCCTTTACGAAGGGAAGCCCGAGCGGAAGGCGATCATTTC CCACATGCGGGAAATGAACCGCCCGCGGCCTCAGGTGAGGGACAAGAGAC CATGA
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Coding sequence (CDS) from alignment at F-distichus_contig102097:115..1069+

>mRNA_F-distichus_contig102097.173.1 ID=mRNA_F-distichus_contig102097.173.1|Name=mRNA_F-distichus_contig102097.173.1|organism=Fucus distichus monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at F-distichus_contig102097:115..1069+ (Fucus distichus monoicous)
ATGACACTGGATGCGTCGACCCTGGACGCCGCCCTGAGGGACAACAAGCT
CTTGATGGTGGAGTTCTTTGCGCCCTGGTGCGGCAACTGCAAGCGCCTAA
GGCCGCGTTTTGCGAGGGCGGCAGACGTTCTCTCGAATGAAGGCATTCCC
CTCGCCAAGATGACACTGGATGCGTCGACCCTGGACGCCGCCCTGAGGGA
CAACAAGCTCTTGATGGTGGAGTTCTTTGCGCCCTGGTGCGGCAACTGCA
AGCGCCTAAGGCCGCGTTTTGCGAGGGCGGCAGACGTTCTCTCGAATGAA
GGCATTCCCCTCGCCAAGGTAGACTGCACCGAGAACGAGGCCCTCTGCCT
CACCAACCCTTGGAAGATCGACCGGTACCCCACCCTGTACGTTTCGCGGA
AGGGCAAGCTGACCCTTTACGAAGGGAAGCCCGAGCGGAAGGCGATCATT
TCCCACATGCGGGAAATGAACCGCCCGCGGCCTCAGGTGAGGGACAAGAG
ACCATGAGTAGACTGCACCGAGAACGAGGCCCTCTGCCTCACCAACCCTT
GGAAGATCGACCGGTACCCCACCCTGTACGTTTCGCGGAAGGGCAAGCTG
ACCCTTTACGAAGGGAAGCCCGAGCGGAAGGCGATCATTTCCCACATGCG
GGAAATGAACCGCCCGCGGCCTCAGGTGAGGGACAAGAGACCATGA
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