mRNA_F-distichus_contig10205.166.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10205.166.1 vs. uniprot
Match: D7FQ05_ECTSI (Ankyrin repeat domain 16 isoform 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ05_ECTSI) HSP 1 Score: 658 bits (1697), Expect = 3.830e-216 Identity = 422/971 (43.46%), Postives = 527/971 (54.27%), Query Frame = 1
Query: 1 VEWRPMRSRPVSTAHSKHI-ERIKPGGKDGGRMGRANMQLTAARSASVGVASTGPSRAVFGSRTEADRELSGAALH---RRPETCGGETMADAAGRTKLPPWKSREVDDCHLKIVHLHPATSYLVRVSAFSLAGYGAPSREALLCTRVSPPSAPRSAPVMVSTTPTSITVGWIPPKYENGAPIARYEIQWLVLGQTRPDWNNDRDVFALETSELSSPSNSDSGGDEGTTIPAGDSPRSTCTDPI-------------------RSSSTTAKVTSAGIDVDNSAESVRSGPT------------PECKNKNCGWTGMKVQSLNPYHTAAGLPMYCRAIFRVRAGNAEGWGHWSPASRPLEAQDIILPIKLGATYMLTRWFNKPGENVVLWELSRRIFKYGGDFRGDDDESWVVCSGEIHGKHEGESTHWCQGLLPGTAYQFRLRAFSTGSWQPKEKAVVSRQFTTVCSPPDPPPRCPRNQQLDSDPMPTNGGLVDTGAVLAGTRRHSCKLTMSRDR----GGEIKNVEYCGEAGRGQATDMGCSEDGSTESERTEIRLDHDTFEGRENGEARVQKDGEEEINIIRGCGEAGRGQETDAHT---------------MAADMALGEDGSAEFEKAEKRLDSITDEVRDY------------VGTREKGSRKGDWREPGEVNDLQRGRDKPKRKSASGGGMHQREADTDGEXXXXXXXXXXXXXVTGEGESTAGVPQ-----------SKVSHNGSTSMMLEWDAGSSNGAITTNFEVWGLAKVVEG-GKTTGDGVWRLVATTGAAPTATLCGLRQAQPYRFKVRARNELGWSEFGPPTKTLVLNPLQACAPPDLTGRGTTWLALRLLAPPKSGLVLGFELQMCRCLPGMSKGEETWTYIYGGEGGSSG--------------------ITRQESPVIRDLRPGAGYRFKARAKTVFGWSPEGSVSEVYTTKRRF 2619
VEWRPMRSRPV AHS+H+ ER++P K + GRA Q R + A T +A DR+ GAA RRP T GGET AD A PWK REV+ L++ HL+PAT+Y+VRVSA +LAGYG PSREALL TRVSPPSAP+ A MVS TP SITVGW+PPKYENG PI RYEIQ LVL + PDW+ R + +SEL + ++ + T +G++ ++ ES P+ E K K W G + L+PYHTA GLP YCRA+FRVRAGN GWG WSP+S LEAQDIILPIK GAT ML RWFNKP +V+ WELSRR+FKYG DFRGD+D+SW++CS +I G EGEST C+GL+PGT YQFRLRA+S G WQ E+++VS F T+CSPPD PP CP +QL SDP+ GG+VDTGA+L+ ++R G GRG + D G + S RT G+AR ++D + + GC +AG D H+ A +G+ E R + + EV+D+ + R E EV Q G A G + EA++ GE GE G + +K+ + ST+M+LEWDAG +NG+ITTN+EVWG+A +G KT+G G W LVA T AAPTATL GLR+AQPYRFKVRARN LGWSEFGPPT +VLNPL+ C P+L RG TWLAL+L APP +GL+LGFE+ MCR PGMS+GEETW + + G +ES ++ DL+PGAGYRFKARA+TVFGWSP G S+VY T RRF
Sbjct: 377 VEWRPMRSRPVCPAHSRHVAERVRPPRKGKKKRGRAGWQGAEIRPGTAEEACTTSHQAFS---MGGDRDALGAASASSLRRPNTGGGETTADEAL-----PWKRREVEAFPLRLKHLYPATNYMVRVSAQTLAGYGVPSREALLRTRVSPPSAPKEAANMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDRHHPDWDKGRVLAKTGSSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQAPAETPACVGSGVESGSTEESRVKLPSVSGGXXXXXXAMDEDKKKIGVWIGRRTDKLSPYHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPIKRGATQMLMRWFNKPDGDVLRWELSRRVFKYGTDFRGDNDDSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPCTRQLASDPLVV-GGMVDTGALLSADAEEPATSGITRGDNRRDGXXXXXXXXXXVDGRG-SVDAGGD---AAFSRRTRAAA---AAAAVVRGKARAEEDFADTGRDVNGCADAGSESRYDGHSSGSGGDDGRTETHGDQGAGEGVGKAACKSIVHGEGRAEVMGLEVKDWDKCVRTSRDDEEIIRRRTHEATSQAEEQDEVGMEQTG--------ARGVRLSNDEAESIGESPFLPELSGDATTKRNHGELEEGKSREDESVEDLAKTAKLCSSASTTMVLEWDAGCTNGSITTNYEVWGVADSTQGQDKTSGSGKWTLVALTKAAPTATLSGLREAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGITWLALKLRAPPGAGLLLGFEMHMCRWAPGMSEGEETWRLVVDSQREQGGREXXXXXXXXXXXXXXXXXXXXXEESRMVWDLKPGAGYRFKARARTVFGWSPGGPASDVYNTARRF 1323
BLAST of mRNA_F-distichus_contig10205.166.1 vs. uniprot
Match: A0A6H5KFL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL4_9PHAE) HSP 1 Score: 600 bits (1548), Expect = 9.140e-195 Identity = 390/931 (41.89%), Postives = 492/931 (52.85%), Query Frame = 1
Query: 226 RRPETCGGETMADAAGRTKLPPWKSREVDDCHLKIVHLHPATSYLVRVSAFSLAGYGAPSREALLCTRVSPPSAPRSAPVMVSTTPTSITVGWIPPKYENGAPIARYEIQWLVLGQTRPDWNNDRDVFALETSEL--------------------------------------------------SSPSNSDSGGDEGTTIPAGDSPRSTCTDPIRSSSTTAKVTSAGIDVDNSAESVRSGPTPECKNKNCGWTGMKVQSLNPYHTAAGLPMYCRAIFRVRAGNAEGWGHWSPASRPLEAQDIILPIKLGATYMLTRWFNKPGENVVLWELSRRIFKYGGDFRGDDDESWVVCSGEIHGKHEGESTHWCQGLLPGTAYQFRLRAFSTGSWQPKEKAVVSRQFTTVCSPPDPPPRCPRNQQLDSDPMPTNGGLVDTGAVLAGTRRHSCKLTMSR----------------DRGGEIKNVEYCGEAGR-GQATDMGCSEDGSTESERTEIRLDHDT-------FEGRENGEARVQKDGEEEINIIRGCGEAGRGQETDAHTMAADMALGEDGSAEF-------------------EKAEKRLDSIT--DEVRDYVGTREKGSRKGDWREPGEVNDLQRGRDKPKRKSASGGGMHQREADTDGEXXXXXXXXXXXXXVTGEGESTAGVPQS-KVSHNGSTSMMLEWDAGSSNGAITTNFEVWGLAKVVEG-GKTTGDGVWRLVATTGAAPTATLCGLR---------------QAQPYRFKVRARNELGWSEFGPPTKTLVLNPLQACAPPDLTGRGTTWLALRLLAPPKSGLVLGFELQMCRCLPGMSKGEETWTYIYGGE---------------------GGSSGITRQESPVIRDLRPGAGYRFKARAKTVFGWSPEGSVSEVYTTKRRF 2619
RRP T GGET AD PWK REV+ L++ HL+PAT+Y+VRVSA +LAGYG PSREALL TRVSPPSAP+ A MVS TP SITVGW+PPKYENG PI RYEIQ LVL + PDW+ R + +SEL ++ + +++ G+ + +G + S P V+ G G E K + W G + L+P+HTA GLP YCRA+FRVRAGN GWG WSP+S LEAQDIILPIK GAT ML RWFNKP +V+ WELSRR+FKYG DFRGD+D SW++CS +I G EGEST C+GL+PGT YQFRLRA+S G WQ E+++VS F T+CSPPD PP CPR +QL SDP+ GG+VDTGA+L+ + + D GG + + R G A G T +E D E R +G++ DG++ G AG G +A + +G AE E+ +R T +E +D VG + G R R E + R+ P + S +R + E ES G ++ K+ + ST+M+LEWDAG +NG++TTN+EVWG+A +G KT+G G W LVA T AAPTATL GLR QAQPYRFKVRARN LGWSEFGPPT +VLNPL+ C P+L RG TWLAL+L APP +GL+LGFE+ MCR PGMS+GEETW+ + + R+ES ++ DL+PGAGYRFKARA+TV GWSP G VS+VY T RRF
Sbjct: 373 RRPNTGGGETTADETF-----PWKRREVETFPLRLKHLYPATNYIVRVSARTLAGYGVPSREALLRTRVSPPSAPKEAVNMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDRHHPDWDKGRVLAKTGSSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATQATAEAPACFGSRVESGSTEESRVKLP--------SVSGGGSGT---------GTMDEDKKQIGVWIGRRTDKLSPHHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPIKRGATQMLIRWFNKPDGDVLRWELSRRVFKYGTDFRGDNDGSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPRARQLASDPLVV-GGIVDTGALLSADAEEPATSGIRKGDNRRDGXXXXXXXXVDGGGSVDAGRDAAFSRRTGAAAAAAAVVRGKTRAEEDFADTGRDVNDCADVGSESRYDGDS-SDSDGDDRRTETHGDQGAGEG----VVMVACKSTVNGEGRAEVMGLEVEDRDTRVPTSRDDEERIRRRTHEATSQEEEQDEVGMEQTGVR--GVRLSNEAESI---RESPSLPALSCDAATKRN------------HTELEEGKSREDESVEGFAKTTKLGSSASTTMVLEWDAGCTNGSVTTNYEVWGVADSTQGQDKTSGSGKWTLVALTEAAPTATLSGLREVCKSLCNPPLVSTRQAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGITWLALKLRAPPGAGLLLGFEMHMCRWAPGMSEGEETWSLVVDSQREEXXXXXXXXXXXXXXXXXXXXXXXXXREESRMVWDLKPGAGYRFKARARTVIGWSPGGPVSDVYNTARRF 1258
BLAST of mRNA_F-distichus_contig10205.166.1 vs. uniprot
Match: A0A7S1XYK0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK0_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 4.860e-17 Identity = 72/243 (29.63%), Postives = 106/243 (43.62%), Query Frame = 1
Query: 1981 STAGVPQSKVSHNGSTSMMLEWDAGSSNGAITTNFEVWGLAKVVEGGKTTGDGVWRLVATTGAAPTATLCGLRQAQPYRFKVRARNELGWSEFGPPTKTLVLNPLQACAPPDLTGRGTTWLALRLLAPPKSGLVLGFELQMCRCLPGMSKGEETWTYI------------------------YGGEGGS-----SGITRQE--SPVIRDLRPGAGYRFKARAKTVFGWSPEGSVSEVYTTKRR 2616
S G+P S +S S+ L W A NGAI +++W +T G W +++ TA + L YRF+VRARN++GWSEFG ++ + N + P++ G +W+ L+ + P +V FE+ M ++ EE W Y G EGG + R E S + DL+ Y+FK R T FGWSP G+ S+V RR
Sbjct: 810 SAPGLPSSDLSLCSGESIFLTWAASKPNGAIVDLYDIWA---------STDFGPWEQMSSC-IHNTADVPHLNSGSQYRFRVRARNDVGWSEFGEESEVVTTNSIAPPGRPEIVAMGGSWVQLKWVQPASVNVVDVFEVYML-----VTGTEEYWDYAPAMAVPAAMVDANAAAEGGDSSHAEGAEGGQYQYQWQAVARVEGTSCTVPDLKSSFRYKFKIRCATAFGWSPFGADSDVIKLPRR 1037
BLAST of mRNA_F-distichus_contig10205.166.1 vs. uniprot
Match: A0A7S2GIS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIS6_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 6.350e-12 Identity = 62/208 (29.81%), Postives = 92/208 (44.23%), Query Frame = 1
Query: 2017 NGSTSMMLEWDAGSSNGAITTNFEVWGLAKVVEGGKTTGDGVWRLVATTGAAPTA---TLCGLRQAQPYRFKVRARNELGWSEFGPPTKTLVLNPLQACAPPDLTGRGTTWLALRLLAPPKSGLVLG-----FELQMCRCLPGMSKGEETWTYIYGGEGGSSGITRQESPVIRDLRPGAGYRFKARAKTVFGWSPEGSVSEVYTTKRR 2616
N S+S++L+W G SNG F+++ DG W ++ T PTA + + + Y FK+RA+NE+GWS+F T + N + + G G TWL L +PP + L+ +ELQ +C P E W + R V+ LR RF+ARA T+ GWS + + T RR
Sbjct: 54 NSSSSIVLQWAVGWSNGPRIECFDIFVSCD---------DGPWNML--TSVEPTAKKFVVSDVVRGTGYVFKIRAKNEIGWSDFSEQTDEIKANAIPMPRNLQVNGSGVTWLELSW-SPPVTDLLAAVRVERYELQQQKCDPAQETSE--WATLT-----CDPALRDTRWVVEGLRSLERLRFRARALTLEGWSAFCDPTPWHRTPRR 242
BLAST of mRNA_F-distichus_contig10205.166.1 vs. uniprot
Match: A0A7S3XNU2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU2_HETAK) HSP 1 Score: 68.6 bits (166), Expect = 2.570e-8 Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 325 KIVHLHPATSYLVRVSAFSLAGYGAPSREALLCTRVSPPSAPRSAPVMVSTTPTSITVGWIPPKYENGAPIARYEIQWLVL 567
++ L PA +Y RVSA ++AG G PS+E T+ PPS P S P+++ + PT +GW+PPKY NGA + +E+++ ++
Sbjct: 61 EVTGLSPACAYAARVSARNVAGLGPPSKEVAFHTKPGPPSTPGS-PLLLRSEPTRAWLGWVPPKYHNGAQLQGFEVRYCLV 140
BLAST of mRNA_F-distichus_contig10205.166.1 vs. uniprot
Match: A0A6A7G3P9_9CRUS (Fibronectin type-III domain-containing protein 3A-like isoform X1 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G3P9_9CRUS) HSP 1 Score: 58.9 bits (141), Expect = 4.990e-5 Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 334 HLHPATSYLVRVSAFSLAGYGAPSREALLCTRVSPPSAPRSAPVMVSTTPTSITVGWIPPKYENGAPIARYEIQWLVLGQTR 579
HLHP TSY +RV A + AG GA S AL+ T S PSAP + TT +SIT+ W PK NG PI Y ++ + G +R
Sbjct: 1060 HLHPDTSYAIRVCAVNSAGMGAFSSHALITTPSSVPSAPTH--ISTVTTSSSITLEWTEPKC-NGDPIQHYVVELVDTGVSR 1138
BLAST of mRNA_F-distichus_contig10205.166.1 vs. uniprot
Match: A0A2P2IAL1_9CRUS (Fibronectin type-III domain-containing protein 3A-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IAL1_9CRUS) HSP 1 Score: 58.5 bits (140), Expect = 6.070e-5 Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 334 HLHPATSYLVRVSAFSLAGYGAPSREALLCTRVSPPSAPRSAPVMVSTTPTSITVGWIPPKYENGAPIARYEIQWLVLGQTR 579
HLHP TSY +RV A + AG GA S AL+ T S PSAP + TT +SIT+ W PK NG PI Y ++ + G +R
Sbjct: 655 HLHPDTSYAIRVCAVNSAGMGAFSGHALITTPSSVPSAPTH--ISTVTTSSSITLEWTEPKC-NGDPIQHYVVELVDTGVSR 733 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10205.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10205.166.1 >prot_F-distichus_contig10205.166.1 ID=prot_F-distichus_contig10205.166.1|Name=mRNA_F-distichus_contig10205.166.1|organism=Fucus distichus monoicous|type=polypeptide|length=869bp MRSRPVSTAHSKHIERIKPGGKDGGRMGRANMQLTAARSASVGVASTGPSback to top mRNA from alignment at F-distichus_contig10205:123..5122+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10205.166.1 ID=mRNA_F-distichus_contig10205.166.1|Name=mRNA_F-distichus_contig10205.166.1|organism=Fucus distichus monoicous|type=mRNA|length=5000bp|location=Sequence derived from alignment at F-distichus_contig10205:123..5122+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10205:123..5122+ >mRNA_F-distichus_contig10205.166.1 ID=mRNA_F-distichus_contig10205.166.1|Name=mRNA_F-distichus_contig10205.166.1|organism=Fucus distichus monoicous|type=CDS|length=5214bp|location=Sequence derived from alignment at F-distichus_contig10205:123..5122+ (Fucus distichus monoicous)back to top |