mRNA_F-distichus_contig102019.165.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102019.165.1
Unique NamemRNA_F-distichus_contig102019.165.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102019.165.1 vs. uniprot
Match: A0A6H5JG49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG49_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.340e-54
Identity = 195/428 (45.56%), Postives = 230/428 (53.74%), Query Frame = 1 
Query:    1 GVYDALNRRIEDLQDNVKRIRSSLVLEVRAIRVSGFGEETQELRLLRRGSGETNSSELRLRHPCGYSLEECTCGQMSSPPEPVREGSLA----AARXXXXXXXXXXXXXXXXXLCE--------------TRTDRSNXXXXXXXXXEECNLMKQRGVRGSDAGASSKKVRSSRTGLGTTDGSELAGADSGNTSSSLDEIKRQMGKDPLEMERRKKALDDEIRAADG--GRRASLRSRDDIFVEGLRDAVDTVREDSTVKATNAADEGVGEDIDNDGGD---------------------------DHRHRLAGMAPHERAEWFEESGRYQEALVWHRRDLAAARRRSLNGEVEDERDLVLDVARALRNTGRCLGKLGMKDFEEAKKHLMDACELVGPGGPFPSPIEEQDVVLELGNLWYHRYLLLAEK 1143
            G +DALN RIEDLQ+++KRIR  LV  VRA+RV+ FGEETQELRL  RG G     ELRL  PCGYSL +C CG  SSP   V  GSL     AARXXXXXXXXXXXXXXXXX                 T  D   XXXXXXXXX       Q G R   AGA+S                             LDE   Q+GK+ LE+ RR+ AL +E   A G  G+R+S      +   G R A     ED      +   +GV   +D   G                            D +  L GM PHERAE FE    + EAL WHR+DL AAR   ++G+ E+ER+ VLD+ARALRNTGRCLGKLG   + E+KK L +A ELVG GG +PSP EEQD+VLELGNL Y RY+L  E+
Sbjct:   62 GEFDALNLRIEDLQESIKRIREYLVRSVRAVRVNKFGEETQELRLRLRGGG----GELRLPPPCGYSLADCVCGASSSPXXXVHAGSLGNAIEAARXXXXXXXXXXXXXXXXXXXXXXXXXGFDGAAGPTTSGDXXXXXXXXXXXXXXXXXAGQLGGRAPAAGANSDDEP-------------------------LDE---QVGKNALELARRRAALGEEGTGASGVGGKRSS--DGGGVVSRG-RAASRQPAEDPERAHDDDGGDGVWGGVDGCVGXXXXXXXXXXWANXXXXXXXXXXXXXXXDWQDALLGMQPHERAEAFEGREMFAEALKWHRQDLEAARACVVSGDEEEERESVLDLARALRNTGRCLGKLGNSGYAESKKCLTEARELVGHGGLYPSPPEEQDLVLELGNLMYSRYVLCDEQ 454
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BLAST of mRNA_F-distichus_contig102019.165.1 vs. uniprot
Match: D8LDQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ0_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 3.310e-54
Identity = 184/415 (44.34%), Postives = 214/415 (51.57%), Query Frame = 1 
Query:    1 GVYDALNRRIEDLQDNVKRIRSSLVLEVRAIRVSGFGEETQELRLLRRGSGETNSSELRLRHPCGYSLEECTCGQMSSPPEPVREGSLA----AARXXXXXXXXXXXXXXXXXLCETRTDRSNXXXXXXXXXEECNLMKQRGVRGSDAGASSKKVRSSRTGLGTTDGSELAGADSGNTSSSLDEIKRQMGKDPLEMERRKKALDDEIRAADGGRRASLRSRDDIFVEGLRDAVDTVREDSTVKA------------------------------TNAADEGVGEDIDNDGGDDHRHRLAGMAPHERAEWFEESGRYQEALVWHRRDLAAARRRSLNGEVEDERDLVLDVARALRNTGRCLGKLGMKDFEEAKKHLMDACELVGPGGPFPSPIEEQDVVLELGNLWYHRYLLLAEK 1143
            G +DALN RIEDLQ+++KRIR  LV  VRA RV+ FGEETQELRL  RG G     ELRL  PCGYSL +C CG  SSPP PV  GSL     AARXXXXXXXXXXXXXXXXX          XXXXXXXXX                                        A + +    +DEIK Q GK+ L + RR+ AL++E +    G      S     V   R A     ED                                    N                D +  L GM PHERAE FE    + EAL WHR+DL AAR   ++G+ E+ER  VLD+ARALRNTGRCLGKLG   + E+KK L +A ELVG GGP+PSP EEQD+VLELGNL Y RY+L  E+
Sbjct:   62 GDFDALNLRIEDLQESIKRIREYLVRSVRAFRVNKFGEETQELRLRLRGGG----GELRLPPPCGYSLADCVCGASSSPPPPVHAGSLGDAIEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASANSDDVPVDEIKSQTGKNALGLARRRAALEEETKTGARGVGGKRSSDGXXVVSRGRAASREPAEDPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWANXXXXXXXXXXXXXXXXDWQDALLGMQPHERAEAFEGREMFAEALRWHRQDLEAARACVVSGDEEEERGSVLDLARALRNTGRCLGKLGNSGYAESKKCLTEARELVGHGGPYPSPPEEQDLVLELGNLMYSRYVLCDEQ 472
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102019.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG49_9PHAE1.340e-5445.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDQ0_ECTSI3.310e-5444.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102019contigF-distichus_contig102019:33..1537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1143
Cds size1143
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102019.165.1prot_F-distichus_contig102019.165.1Fucus distichus monoicouspolypeptideF-distichus_contig102019 33..1537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928934.3212183-CDS-F-distichus_contig102019:32..1671622928934.3212183-CDS-F-distichus_contig102019:32..167Fucus distichus monoicousCDSF-distichus_contig102019 33..167 -
1690885073.2842593-CDS-F-distichus_contig102019:32..1671690885073.2842593-CDS-F-distichus_contig102019:32..167Fucus distichus monoicousCDSF-distichus_contig102019 33..167 -
1622928934.3313107-CDS-F-distichus_contig102019:457..11161622928934.3313107-CDS-F-distichus_contig102019:457..1116Fucus distichus monoicousCDSF-distichus_contig102019 458..1116 -
1690885073.2961488-CDS-F-distichus_contig102019:457..11161690885073.2961488-CDS-F-distichus_contig102019:457..1116Fucus distichus monoicousCDSF-distichus_contig102019 458..1116 -
1622928934.3396215-CDS-F-distichus_contig102019:1188..15371622928934.3396215-CDS-F-distichus_contig102019:1188..1537Fucus distichus monoicousCDSF-distichus_contig102019 1189..1537 -
1690885073.3061187-CDS-F-distichus_contig102019:1188..15371690885073.3061187-CDS-F-distichus_contig102019:1188..1537Fucus distichus monoicousCDSF-distichus_contig102019 1189..1537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102019.165.1

>prot_F-distichus_contig102019.165.1 ID=prot_F-distichus_contig102019.165.1|Name=mRNA_F-distichus_contig102019.165.1|organism=Fucus distichus monoicous|type=polypeptide|length=381bp
GVYDALNRRIEDLQDNVKRIRSSLVLEVRAIRVSGFGEETQELRLLRRGS
GETNSSELRLRHPCGYSLEECTCGQMSSPPEPVREGSLAAAREAAAAAAA
SAAAGPTTALCETRTDRSNKRRVVEDDDEECNLMKQRGVRGSDAGASSKK
VRSSRTGLGTTDGSELAGADSGNTSSSLDEIKRQMGKDPLEMERRKKALD
DEIRAADGGRRASLRSRDDIFVEGLRDAVDTVREDSTVKATNAADEGVGE
DIDNDGGDDHRHRLAGMAPHERAEWFEESGRYQEALVWHRRDLAAARRRS
LNGEVEDERDLVLDVARALRNTGRCLGKLGMKDFEEAKKHLMDACELVGP
GGPFPSPIEEQDVVLELGNLWYHRYLLLAEK
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mRNA from alignment at F-distichus_contig102019:33..1537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102019.165.1 ID=mRNA_F-distichus_contig102019.165.1|Name=mRNA_F-distichus_contig102019.165.1|organism=Fucus distichus monoicous|type=mRNA|length=1505bp|location=Sequence derived from alignment at F-distichus_contig102019:33..1537- (Fucus distichus monoicous)
GGCGTGTACGACGCGCTCAACCGAAGGATCGAAGACTTGCAGGACAACGT
CAAGCGTATTCGTAGCTCCCTCGTGCTGGAGGTTCGTGCCATCCGAGTGT
CCGGGTTCGGCGAGGAGACTCAAGAGCTACGTCTGTTGCGTCGCGGATCG
GGAGAGACTAACAGCTCGGAACTCCGCCTACGTCACCCGTGCGGCTACAG
CCTGGAGGAGTGTACTTGTGGGCAGATGTCGTCACCCCCAGAACCTGTCC
GAGAGGGTAGTCTAGCGGCGGCGAGGGAAGCGGCGGCGGCGGCGGCGGCA
TCAGCAGCGGCAGGACCGACGACTGCGCTTTGCGAAACCAGAACCGATCG
TACACAGAAGAACGAGCCCGCCGCACGTGACGGCCGGGATTCTCTAGCGA
ATGGAAAGAGCGCGCGAGGAGGCAGTAATAAGCGGCGAGTCGTCGAGGAT
GACGACGAAGAGTGTAACCTAATGAAACAGCGAGGGGTGCGGGGCAGTGA
CGCCGGAGCCTCGTCGAAGAAAGTACGCTCGTCGCGGACCGGCCTCGGAA
CAACGGATGGCTCTGAGCTCGCCGGGGCTGACTCGGGCAACACCAGCAGT
AGCCTGGACGAGATAAAGCGTCAGATGGGGAAGGACCCTCTCGAGATGGA
GCGCAGGAAGAAGGCGCTTGACGACGAAATACGAGCGGCCGACGGGGGCC
GACGGGCCTCCCTTCGCAGCCGTGACGATATCTTCGTTGAGGGACTGCGC
GACGCGGTGGACACCGTCCGGGAAGACTCGACCGTCAAAGCAACAAATGC
CGCGGACGAGGGAGTGGGAGAGGATATCGACAACGATGGTGGCGACGACC
ATCGCCATCGTCTTGCGGGGATGGCGCCACACGAAAGGGCGGAGTGGTTC
GAGGAGTCCGGCAGGTACCAGGAGGCGCTGGTGTGGCATCGACGGGACCT
CGCGGCCGCCCGTCGACGCTCGTTGAACGGGGAAGTCGAGGACGAACGGG
ACCTTGTCTTGGATGTCGCTCGAGCCCTGCGAAACACCGGGCGCTGTCTC
GGGAAGCTTGGTATGAAGGATTTCGAAGAGGTGAGGTGGCGTGCGCGCTT
CGGAAACAACGGCAGCTGCCAACGTGTTTCGCGGGGACGTGAGGACCATA
GAAACGGATTTACGTCATGACGTACCCCGATTTCCCCAGCTCCGCGTGAG
GCTCCTAGACGAATATAATTTTTTAACATTTTTTTTTTAACATTTTTGCG
GCTAAAACACTAATGGAATGCAAGTATACTCTAGAGAAGTCTTCACACCA
TGCATACGAATGTCAAGAAAATTCCCCGCCGAAGAAGCAATTTCATCTCC
CACCCGCCCTGTGGACGAAGGCAAAGAAGCACCTAATGGACGCGTGCGAA
CTGGTGGGGCCTGGTGGACCGTTCCCCTCTCCGATCGAGGAGCAGGACGT
GGTGCTGGAGCTGGGAAACCTGTGGTACCACCGCTACCTGCTACTGGCGG
AAAAG
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Coding sequence (CDS) from alignment at F-distichus_contig102019:33..1537-

>mRNA_F-distichus_contig102019.165.1 ID=mRNA_F-distichus_contig102019.165.1|Name=mRNA_F-distichus_contig102019.165.1|organism=Fucus distichus monoicous|type=CDS|length=2286bp|location=Sequence derived from alignment at F-distichus_contig102019:33..1537- (Fucus distichus monoicous)
GGCGTGTACGACGCGCTCAACCGAAGGATCGAAGACTTGCAGGACAACGT
CAAGCGTATTCGTAGCTCCCTCGTGCTGGAGGTTCGTGCCATCCGAGTGT
CCGGGTTCGGCGAGGAGACTCAAGAGCTACGTCTGTTGCGTCGCGGATCG
GGAGAGACTAACAGCTCGGAACTCCGCCTACGTCACCCGTGCGGCTACAG
CCTGGAGGAGTGTACTTGTGGGCAGATGTCGTCACCCCCAGAACCTGTCC
GAGAGGGTAGTCTAGCGGCGGCGAGGGAAGCGGCGGCGGCGGCGGCGGCA
TCAGCAGCGGCAGGACCGACGACTGCGCTTTGCGAAACCAGAACCGATCG
GCGTGTACGACGCGCTCAACCGAAGGATCGAAGACTTGCAGGACAACGTC
AAGCGTATTCGTAGCTCCCTCGTGCTGGAGGTTCGTGCCATCCGAGTGTC
CGGGTTCGGCGAGGAGACTCAAGAGCTACGTCTGTTGCGTCGCGGATCGG
GAGAGACTAACAGCTCGGAACTCCGCCTACGTCACCCGTGCGGCTACAGC
CTGGAGGAGTGTACTTGTGGGCAGATGTCGTCACCCCCAGAACCTGTCCG
AGAGGGTAGTCTAGCGGCGGCGAGGGAAGCGGCGGCGGCGGCGGCGGCAT
CAGCAGCGGCAGGACCGACGACTGCGCTTTGCGAAACCAGAACCGATCGC
AGTAATAAGCGGCGAGTCGTCGAGGATGACGACGAAGAGTGTAACCTAAT
GAAACAGCGAGGGGTGCGGGGCAGTGACGCCGGAGCCTCGTCGAAGAAAG
TACGCTCGTCGCGGACCGGCCTCGGAACAACGGATGGCTCTGAGCTCGCC
GGGGCTGACTCGGGCAACACCAGCAGTAGCCTGGACGAGATAAAGCGTCA
GATGGGGAAGGACCCTCTCGAGATGGAGCGCAGGAAGAAGGCGCTTGACG
ACGAAATACGAGCGGCCGACGGGGGCCGACGGGCCTCCCTTCGCAGCCGT
GACGATATCTTCGTTGAGGGACTGCGCGACGCGGTGGACACCGTCCGGGA
AGACTCGACCGTCAAAGCAACAAATGCCGCGGACGAGGGAGTGGGAGAGG
ATATCGACAACGATGGTGGCGACGACCATCGCCATCGTCTTGCGGGGATG
GCGCCACACGAAAGGGCGGAGTGGTTCGAGGAGTCCGGCAGGTACCAGGA
GGCGCTGGTGTGGCATCGACGGGACCTCGCGGCCGCCCGTCGACGCTCGT
TGAACGGGGAAGTCGAGGACGAACGGGACCTTGTCTTGGATGTCGCTCGA
GCCCTGCGAAACACCGGGCGCTGTCTCGGGAAGCTTGGTATGAAGGATTT
CGAAGAGGCAGTAATAAGCGGCGAGTCGTCGAGGATGACGACGAAGAGTG
TAACCTAATGAAACAGCGAGGGGTGCGGGGCAGTGACGCCGGAGCCTCGT
CGAAGAAAGTACGCTCGTCGCGGACCGGCCTCGGAACAACGGATGGCTCT
GAGCTCGCCGGGGCTGACTCGGGCAACACCAGCAGTAGCCTGGACGAGAT
AAAGCGTCAGATGGGGAAGGACCCTCTCGAGATGGAGCGCAGGAAGAAGG
CGCTTGACGACGAAATACGAGCGGCCGACGGGGGCCGACGGGCCTCCCTT
CGCAGCCGTGACGATATCTTCGTTGAGGGACTGCGCGACGCGGTGGACAC
CGTCCGGGAAGACTCGACCGTCAAAGCAACAAATGCCGCGGACGAGGGAG
TGGGAGAGGATATCGACAACGATGGTGGCGACGACCATCGCCATCGTCTT
GCGGGGATGGCGCCACACGAAAGGGCGGAGTGGTTCGAGGAGTCCGGCAG
GTACCAGGAGGCGCTGGTGTGGCATCGACGGGACCTCGCGGCCGCCCGTC
GACGCTCGTTGAACGGGGAAGTCGAGGACGAACGGGACCTTGTCTTGGAT
GTCGCTCGAGCCCTGCGAAACACCGGGCGCTGTCTCGGGAAGCTTGGTAT
GAAGGATTTCGAAGAGGCAAAGAAGCACCTAATGGACGCGTGCGAACTGG
TGGGGCCTGGTGGACCGTTCCCCTCTCCGATCGAGGAGCAGGACGTGGTG
CTGGAGCTGGGAAACCTGTGGTACCACCGCTACCTGCTACTGGCGGAAAA
GGCAAAGAAGCACCTAATGGACGCGTGCGAACTGGTGGGGCCTGGTGGAC
CGTTCCCCTCTCCGATCGAGGAGCAGGACGTGGTGCTGGAGCTGGGAAAC
CTGTGGTACCACCGCTACCTGCTACTGGCGGAAAAG
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