mRNA_F-distichus_contig10193.158.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10193.158.1
Unique NamemRNA_F-distichus_contig10193.158.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.360e-13
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGLVR--LRQVTLHPYEVTRAQGVPEA 303
            Q CV+L  STSEAEY+AM +GVK AL +  +L  ++P    R ID++ DNEGA A AEN   S RSKHI V   FLR L    + +VT  P +V  A  + +A
Sbjct:  172 QKCVSL--STSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKVQHADILTKA 272
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.280e-12
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGL 237
            Q CV+L  STSEAEY+AM +GVK AL +  +L L++P    R ID++ DNEGA A AEN   S RSKHI V   FLR L
Sbjct:  607 QKCVSL--STSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNL 683
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.530e-12
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGL 237
            Q CV+L  STSEAEY+AM +GVK AL +  +L  ++P    R ID++ DNEGA A AEN   S RSKHI V   FLR L
Sbjct:  434 QKCVSL--STSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNL 510
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.850e-12
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGL 237
            Q CV+L  STSEAEY+AM +GVK AL +  +L  ++P    R ID++ DNEGA A AEN   S RSKHI V   FLR L
Sbjct: 1162 QKCVSL--STSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNL 1238
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.040e-11
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGL 237
            Q CV+L  STSEAEY+AM +GVK A  +  +L  ++P    R ID++ DNEGA A AEN   S RSKHI V   FLR L
Sbjct:  267 QKCVSL--STSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNL 343
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.670e-11
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGL 237
            Q CV+   STSEAEY+AM +GVK AL +  +L  ++P +  R ID+  DNEGA A AEN   S RSKHI V   FLR L
Sbjct:  140 QKCVSQ--STSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNL 216
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.720e-11
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGLVR--LRQVTLHPYEVTRAQGVPEA 303
            Q CV+   STSEAEY+AM +GVK +L +  +L  ++P +  R ID+  DNEGA A AEN   S RSKHI V   FLR L    + ++T  P E   A  + +A
Sbjct:  122 QKCVSQ--STSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKA 222
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.350e-11
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGLVR--LRQVTLHPYEVTRAQGVPEA 303
            Q CV+   STSEAEY+AM +GVK AL +  +L  ++P    R ID+  DNEGA A AEN   S RSKHI V   FLR L    + +VT  P E   A  + +A
Sbjct:  377 QKCVSQ--STSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKA 477
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.560e-11
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGLVR--LRQVTLHPYEVTRAQGVPEA 303
            Q CV+   STSEAEY+AM +GVK AL +  +L  ++P    R ID+  DNEGA A AEN   S RSKHI V   FLR L    + +VT  P E   A  + +A
Sbjct:  842 QKCVSQ--STSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKA 942
[Close]
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.970e-11
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    1 QHCVTLYISTSEAEYVAMANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSKHIGVYFRFLRGLVR--LRQVTLHPYEVTRAQGVPEA 303
            Q CV+   STSEAEY+AM +GVK AL +  +L  ++P    R ID+  DNEGA A AEN   S RSKHI V   FLR L    + +VT  P E   A  + +A
Sbjct: 1109 QKCVSQ--STSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKA 1209
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10193.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTP8_9PHAE4.360e-1347.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE1.280e-1255.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE4.530e-1254.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE4.850e-1254.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE1.040e-1153.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCG6_9PHAE2.670e-1153.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8M4_9PHAE7.720e-1144.66Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B2_9PHAE9.350e-1146.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE9.560e-1146.60Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE9.970e-1146.60Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10193contigF-distichus_contig10193:6204..6859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size656
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10193.158.1prot_F-distichus_contig10193.158.1Fucus distichus monoicouspolypeptideF-distichus_contig10193 6255..6512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.5632887-UTR-F-distichus_contig10193:6203..62541622928933.5632887-UTR-F-distichus_contig10193:6203..6254Fucus distichus monoicousUTRF-distichus_contig10193 6204..6254 +
1690885072.7979362-UTR-F-distichus_contig10193:6203..62541690885072.7979362-UTR-F-distichus_contig10193:6203..6254Fucus distichus monoicousUTRF-distichus_contig10193 6204..6254 +
1622928933.5893464-UTR-F-distichus_contig10193:6512..68591622928933.5893464-UTR-F-distichus_contig10193:6512..6859Fucus distichus monoicousUTRF-distichus_contig10193 6513..6859 +
1690885072.8178835-UTR-F-distichus_contig10193:6512..68591690885072.8178835-UTR-F-distichus_contig10193:6512..6859Fucus distichus monoicousUTRF-distichus_contig10193 6513..6859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.576503-CDS-F-distichus_contig10193:6254..65121622928933.576503-CDS-F-distichus_contig10193:6254..6512Fucus distichus monoicousCDSF-distichus_contig10193 6255..6512 +
1690885072.8086205-CDS-F-distichus_contig10193:6254..65121690885072.8086205-CDS-F-distichus_contig10193:6254..6512Fucus distichus monoicousCDSF-distichus_contig10193 6255..6512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10193.158.1

>prot_F-distichus_contig10193.158.1 ID=prot_F-distichus_contig10193.158.1|Name=mRNA_F-distichus_contig10193.158.1|organism=Fucus distichus monoicous|type=polypeptide|length=86bp
MANGVKAALAIKAVLDLVQPHLSGRVIDMYGDNEGAKASAENIQGSHRSK
HIGVYFRFLRGLVRLRQVTLHPYEVTRAQGVPEAP*
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mRNA from alignment at F-distichus_contig10193:6204..6859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10193.158.1 ID=mRNA_F-distichus_contig10193.158.1|Name=mRNA_F-distichus_contig10193.158.1|organism=Fucus distichus monoicous|type=mRNA|length=656bp|location=Sequence derived from alignment at F-distichus_contig10193:6204..6859+ (Fucus distichus monoicous)
CAGCATTGCGTGACACTATATATATCTACGAGTGAGGCGGAGTATGTTGC
AATGGCCAATGGAGTAAAGGCTGCTTTAGCGATAAAGGCGGTGTTGGATC
TCGTTCAGCCACATCTCAGTGGTAGGGTCATTGATATGTACGGGGATAAC
GAGGGAGCAAAGGCATCGGCTGAAAATATCCAAGGTTCTCACCGCAGCAA
GCACATAGGCGTGTACTTTCGTTTTCTGCGGGGACTCGTAAGGTTGAGGC
AGGTAACACTGCATCCTTACGAAGTCACCAGGGCGCAAGGCGTTCCGGAG
GCACCGTGAATTGACGCCGCCCAGTGGACGCATGTAGCCCACGACGAGGG
GGAATGGCGTAAAACGGCAGAACAACAGGCGGATCGTTTAATAGCAAAGG
AAAGGATCGCTGCAGAGAAAGCCAGGGCTATACCACGGCACGCTGTAATG
TGCTCAAACTTGACGGGAAAAACCAAGGAGATGAAAGCCCAAAGAATGCT
CGTGCTGGTTCGCTCGCCATAGTTGATTAGTCACAAGTGGTGCAAACTTG
CATCCTCCGAGCGGATGCCGTGTTGTCTTTCTCTGGCATTACGTTTGTTT
TGTTTTAGTTTCGTTTTCGTCCTTCTTGCTTTTTTCAAAGCCGCGGCCCT
TCGTTC
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Coding sequence (CDS) from alignment at F-distichus_contig10193:6204..6859+

>mRNA_F-distichus_contig10193.158.1 ID=mRNA_F-distichus_contig10193.158.1|Name=mRNA_F-distichus_contig10193.158.1|organism=Fucus distichus monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at F-distichus_contig10193:6204..6859+ (Fucus distichus monoicous)
ATGGCCAATGGAGTAAAGGCTGCTTTAGCGATAAAGGCGGTGTTGGATCT
CGTTCAGCCACATCTCAGTGGTAGGGTCATTGATATGTACGGGGATAACG
AGGGAGCAAAGGCATCGGCTGAAAATATCCAAGGTTCTCACCGCAGCAAG
CACATAGGCGTGTACTTTCGTTTTCTGCGGGGACTCGTAAGGTTGAGGCA
GGTAACACTGCATCCTTACGAAGTCACCAGGGCGCAAGGCGTTCCGGAGG
CACCGTGAATGGCCAATGGAGTAAAGGCTGCTTTAGCGATAAAGGCGGTG
TTGGATCTCGTTCAGCCACATCTCAGTGGTAGGGTCATTGATATGTACGG
GGATAACGAGGGAGCAAAGGCATCGGCTGAAAATATCCAAGGTTCTCACC
GCAGCAAGCACATAGGCGTGTACTTTCGTTTTCTGCGGGGACTCGTAAGG
TTGAGGCAGGTAACACTGCATCCTTACGAAGTCACCAGGGCGCAAGGCGT
TCCGGAGGCACCGTGA
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