mRNA_F-distichus_contig101856.153.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101856.153.1
Unique NamemRNA_F-distichus_contig101856.153.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: D7FLZ3_ECTSI (GTP_CH_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ3_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.980e-22
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 1
Query:   10 YRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            + PWL KGYD+RPTIAVTKAHIDLPEV+EAVR+GRL PDGK+L+++GQSFITK
Sbjct:  176 FDPWLRKGYDVRPTIAVTKAHIDLPEVREAVRLGRLVPDGKVLSKEGQSFITK 228          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: A0A835YXC9_9STRA (GTP cyclohydrolase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.570e-20
Identity = 39/50 (78.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:   19 WLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            ++ KGYD+RPTIAVTKAHI+LPEVKEA+RVGRLKPDGKILN +GQ+F++K
Sbjct:  147 YIRKGYDVRPTIAVTKAHIELPEVKEALRVGRLKPDGKILNAEGQAFVSK 196          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: A0A7S2JIP4_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIP4_9DINO)

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-19
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 SQEYRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            S+ + PWL KGYDIRPTIAVTKAHI+LPE +EA+RVGRL+ DG +L  +GQSF+TK
Sbjct:  247 SEGFAPWLEKGYDIRPTIAVTKAHIELPECREALRVGRLEADGAVLTAEGQSFVTK 302          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: A0A6U6N6L8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6N6L8_9DINO)

HSP 1 Score: 88.2 bits (217), Expect = 2.500e-19
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 SQEYRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            S+ +RPWL KG+DIRPTIAVTKAHI+LPE +EA++ GRL  DG +L  DGQSF+TK
Sbjct:  215 SEGFRPWLEKGFDIRPTIAVTKAHIELPECREALKAGRLTADGAVLTGDGQSFVTK 270          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: A0A7S1WIU3_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WIU3_ALECA)

HSP 1 Score: 89.0 bits (219), Expect = 2.640e-19
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 SQEYRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            S+ + PWL KG+D+RPTIAVTKAHI+LPE +EA++ GRL+ DG +L EDGQSF+TK
Sbjct:  335 SEGFAPWLEKGFDVRPTIAVTKAHIELPECREALKAGRLEADGAVLTEDGQSFVTK 390          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: F0YEY4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEY4_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 4.940e-19
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 SQEYRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            S+ + PWLNKGYD+RPTIA+TKAH++LPE KEA+R GRL PDG IL E G S +TK
Sbjct:  668 SEGFGPWLNKGYDVRPTIAITKAHVELPECKEALRSGRLVPDGDILEESGTSVVTK 723          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: A0A6V1R1S8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R1S8_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 1.020e-18
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    7 EYRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            E+  +L KGYDIRPTIAVTKAHIDLPEV+EA+RVGRL  DG ILNE GQ+FI+K
Sbjct:  108 EFDTYLRKGYDIRPTIAVTKAHIDLPEVQEALRVGRLTADGAILNEKGQTFISK 161          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: A0A7S2SSD0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSD0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.170e-18
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    4 QEYRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            Q +R  + KGYDIRPTIA+T+AHIDLPE KEA+RVGRL+PDGK+L  DGQS I+K
Sbjct:  166 QFFREHMEKGYDIRPTIAITRAHIDLPECKEAIRVGRLEPDGKVLTGDGQSHISK 220          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: A0A7S3GYW6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYW6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.920e-18
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   10 YRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            + P+  KGYDIRPTIAVTKAHID PEVKEA+R+GRL PDGKIL  D Q+ +TK
Sbjct:  132 FEPYFKKGYDIRPTIAVTKAHIDFPEVKEAIRLGRLIPDGKILKADAQAMVTK 184          
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Match: A0A7S3GY78_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GY78_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.140e-18
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 1
Query:   16 PWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDGQSFITK 168
            P+  KGYDIRPTIAVTKAHID PEVKEA+R+GRL PDGKIL  D Q+ +TK
Sbjct:   10 PYFKKGYDIRPTIAVTKAHIDFPEVKEAIRLGRLIPDGKILKADAQAMVTK 60          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101856.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ3_ECTSI1.980e-2279.25GTP_CH_N domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YXC9_9STRA9.570e-2078.00GTP cyclohydrolase N terminal-domain-containing pr... [more]
A0A7S2JIP4_9DINO1.400e-1969.64Hypothetical protein n=2 Tax=Brandtodinium nutricu... [more]
A0A6U6N6L8_9DINO2.500e-1967.86Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1WIU3_ALECA2.640e-1966.07Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
F0YEY4_AURAN4.940e-1967.86Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6V1R1S8_HETAK1.020e-1875.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SSD0_9STRA1.170e-1870.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3GYW6_9STRA1.920e-1871.70Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3GY78_9STRA2.140e-1874.51Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101856contigF-distichus_contig101856:1796..1963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.9e-18
Seed eggNOG ortholog2880.D7FLZ3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.3,4-dihydroxy-2-butanone-4-phosphate synthase activity
EggNOG OGsCOG0807@1,KOG1284@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.1941674-CDS-F-distichus_contig101856:1795..19631622928933.1941674-CDS-F-distichus_contig101856:1795..1963Fucus distichus monoicousCDSF-distichus_contig101856 1796..1963 -
1690885072.6021054-CDS-F-distichus_contig101856:1795..19631690885072.6021054-CDS-F-distichus_contig101856:1795..1963Fucus distichus monoicousCDSF-distichus_contig101856 1796..1963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101856.153.1prot_F-distichus_contig101856.153.1Fucus distichus monoicouspolypeptideF-distichus_contig101856 1796..1963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101856.153.1

>prot_F-distichus_contig101856.153.1 ID=prot_F-distichus_contig101856.153.1|Name=mRNA_F-distichus_contig101856.153.1|organism=Fucus distichus monoicous|type=polypeptide|length=56bp
SQEYRPWLNKGYDIRPTIAVTKAHIDLPEVKEAVRVGRLKPDGKILNEDG
QSFITK
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mRNA from alignment at F-distichus_contig101856:1796..1963-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101856.153.1 ID=mRNA_F-distichus_contig101856.153.1|Name=mRNA_F-distichus_contig101856.153.1|organism=Fucus distichus monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at F-distichus_contig101856:1796..1963- (Fucus distichus monoicous)
TCACAGGAGTACAGACCGTGGTTGAACAAGGGTTACGACATTCGACCGAC CATCGCGGTCACGAAGGCTCACATCGACCTACCAGAGGTCAAGGAGGCAG TGAGAGTCGGCAGGCTCAAGCCGGATGGGAAAATTTTGAATGAAGACGGG CAATCCTTTATCACGAAG
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Coding sequence (CDS) from alignment at F-distichus_contig101856:1796..1963-

>mRNA_F-distichus_contig101856.153.1 ID=mRNA_F-distichus_contig101856.153.1|Name=mRNA_F-distichus_contig101856.153.1|organism=Fucus distichus monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at F-distichus_contig101856:1796..1963- (Fucus distichus monoicous)
TCACAGGAGTACAGACCGTGGTTGAACAAGGGTTACGACATTCGACCGAC
CATCGCGGTCACGAAGGCTCACATCGACCTACCAGAGGTCAAGGAGGCAG
TGAGAGTCGGCAGGCTCAAGCCGGATGGGAAAATTTTGAATGAAGACGGG
CAATCCTTTATCACGAAGTCACAGGAGTACAGACCGTGGTTGAACAAGGG
TTACGACATTCGACCGACCATCGCGGTCACGAAGGCTCACATCGACCTAC
CAGAGGTCAAGGAGGCAGTGAGAGTCGGCAGGCTCAAGCCGGATGGGAAA
ATTTTGAATGAAGACGGGCAATCCTTTATCACGAAG
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