mRNA_F-distichus_contig10182.151.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10182.151.1
Unique NamemRNA_F-distichus_contig10182.151.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10182.151.1 vs. uniprot
Match: D7FML7_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.650e-11
Identity = 45/101 (44.55%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:   40 TRGSRGSGRQQTWKK--------EIEDDEEEEFPFLTGYPVSSNGSRMLLDNRLEETGLGLALKPEEHEEQFSWTSKGSGEPGDALGFFLADGTPDIRLRR 318
            T G R   +QQ W +        E  +D EE FPFL           +L D+R EETGLGLA + E+  E       G G  G A GFFLADGTP+IRLRR
Sbjct:  470 TPGGRWREKQQAWVEREQQGGGGEGREDGEEAFPFL----AEDEMMEVLPDDRFEETGLGLARRAEDEAESDQSEDSGDGANGTARGFFLADGTPNIRLRR 566
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BLAST of mRNA_F-distichus_contig10182.151.1 vs. uniprot
Match: A0A6H5JQQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.400e-5
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:  169 NRLEETGLGLALKPEEHEEQFSWTSKGSGEPGDALGFFLADGTPDIRLRR 318
            ++ +ETGLGLA + E+  E       G G  G   GFFLADGTP+IRLRR
Sbjct:    2 HKRQETGLGLARRAEDEAESDQSEDSGDGANGTTRGFFLADGTPNIRLRR 51
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10182.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FML7_ECTSI1.650e-1144.55WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JQQ8_9PHAE1.400e-552.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10182contigF-distichus_contig10182:10515..11130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7FML7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of myosin-light-chain-phosphatase activity
EggNOG OGsCOG0666@1,KOG0505@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.1122687-CDS-F-distichus_contig10182:10514..106941622928933.1122687-CDS-F-distichus_contig10182:10514..10694Fucus distichus monoicousCDSF-distichus_contig10182 10515..10694 +
1690885072.5636966-CDS-F-distichus_contig10182:10514..106941690885072.5636966-CDS-F-distichus_contig10182:10514..10694Fucus distichus monoicousCDSF-distichus_contig10182 10515..10694 +
1622928933.1212316-CDS-F-distichus_contig10182:10992..111301622928933.1212316-CDS-F-distichus_contig10182:10992..11130Fucus distichus monoicousCDSF-distichus_contig10182 10993..11130 +
1690885072.576472-CDS-F-distichus_contig10182:10992..111301690885072.576472-CDS-F-distichus_contig10182:10992..11130Fucus distichus monoicousCDSF-distichus_contig10182 10993..11130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10182.151.1prot_F-distichus_contig10182.151.1Fucus distichus monoicouspolypeptideF-distichus_contig10182 10515..11130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10182.151.1

>prot_F-distichus_contig10182.151.1 ID=prot_F-distichus_contig10182.151.1|Name=mRNA_F-distichus_contig10182.151.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
DSAGVSTRFGAGMTRGSRGSGRQQTWKKEIEDDEEEEFPFLTGYPVSSNG
SRMLLDNRLEETGLGLALKPEEHEEQFSWTSKGSGEPGDALGFFLADGTP
DIRLRR
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mRNA from alignment at F-distichus_contig10182:10515..11130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10182.151.1 ID=mRNA_F-distichus_contig10182.151.1|Name=mRNA_F-distichus_contig10182.151.1|organism=Fucus distichus monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at F-distichus_contig10182:10515..11130+ (Fucus distichus monoicous)
GATTCTGCGGGAGTCTCAACAAGATTTGGAGCCGGAATGACAAGGGGTAG
CAGAGGATCAGGAAGGCAGCAGACGTGGAAGAAGGAAATAGAGGATGACG
AAGAAGAAGAATTTCCGTTCCTCACCGGATATCCGGTCTCCTCAAATGGC
TCTCGGATGTTACTGGATAACCGTCTCGAGGTTCGTGTGAGTGTTTACTC
CTTTCGGTTTCGCACTACAAAGTTATTGTCTGACATTTACCCTGGGAAAC
CCACGCAATGCTATCGTCCGAATGCGCGCCCCAAAGTGATTTTTCTCGTC
ATCCGCGCCCACAATTCATCTCGTGCCACTTCGATGCGCCCCTGCAGGAG
GCGTACGTGTTCACCCTCCATCACCCTTTTGACTATAACGACTTGTGCTG
GGACATGAGTCGAGGTCCCGGTGCCCTTCAATAACCGAACTCTTGCATAT
TCATCCAAATGCGCGTGCGTCTTCTTAGGAGACCGGTCTTGGACTTGCCC
TCAAACCCGAAGAACATGAAGAACAATTTTCTTGGACTTCCAAAGGCTCC
GGAGAGCCTGGGGATGCTCTTGGCTTCTTTTTGGCCGACGGAACACCGGA
CATTCGACTTCGCAGG
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Coding sequence (CDS) from alignment at F-distichus_contig10182:10515..11130+

>mRNA_F-distichus_contig10182.151.1 ID=mRNA_F-distichus_contig10182.151.1|Name=mRNA_F-distichus_contig10182.151.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig10182:10515..11130+ (Fucus distichus monoicous)
GATTCTGCGGGAGTCTCAACAAGATTTGGAGCCGGAATGACAAGGGGTAG
CAGAGGATCAGGAAGGCAGCAGACGTGGAAGAAGGAAATAGAGGATGACG
AAGAAGAAGAATTTCCGTTCCTCACCGGATATCCGGTCTCCTCAAATGGC
TCTCGGATGTTACTGGATAACCGTCTCGAGGATTCTGCGGGAGTCTCAAC
AAGATTTGGAGCCGGAATGACAAGGGGTAGCAGAGGATCAGGAAGGCAGC
AGACGTGGAAGAAGGAAATAGAGGATGACGAAGAAGAAGAATTTCCGTTC
CTCACCGGATATCCGGTCTCCTCAAATGGCTCTCGGATGTTACTGGATAA
CCGTCTCGAGGAGACCGGTCTTGGACTTGCCCTCAAACCCGAAGAACATG
AAGAACAATTTTCTTGGACTTCCAAAGGCTCCGGAGAGCCTGGGGATGCT
CTTGGCTTCTTTTTGGCCGACGGAACACCGGACATTCGACTTCGCAGGGA
GACCGGTCTTGGACTTGCCCTCAAACCCGAAGAACATGAAGAACAATTTT
CTTGGACTTCCAAAGGCTCCGGAGAGCCTGGGGATGCTCTTGGCTTCTTT
TTGGCCGACGGAACACCGGACATTCGACTTCGCAGG
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