mRNA_F-distichus_contig10182.150.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10182.150.1
Unique NamemRNA_F-distichus_contig10182.150.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10182.150.1 vs. uniprot
Match: A0A6H5JR09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR09_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.930e-26
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 RDGADTYVPA-GGGLRQELLRLTAERDRLASIEEAQRETQQTTKRQQFLRFARREWLASDRAAESVQRVFRGYVGRKKANLTAEV 252
            RDG D +VP   GGLR+ L +L AERDRLASIEE QR+  +  KR +F+RFARR+WLASD AAESVQRVFRG++GRK+A L AEV
Sbjct:   39 RDGFDAFVPGKNGGLREGLQKLGAERDRLASIEEEQRKICREAKRLEFVRFARRKWLASDLAAESVQRVFRGHIGRKRAALNAEV 123
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BLAST of mRNA_F-distichus_contig10182.150.1 vs. uniprot
Match: D7FML7_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML7_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.230e-21
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 RDGADTYVPAGG-GLRQELLRLTAERDRLASIEEAQRETQQTTKRQQFLRFARREWLASDRAAESVQRVFRGYVGRKKANLTAEV 252
            RDG DT+VP    GLR+ L +L AERDRLA IEE QR+  +   R +F+RFARR+WLASD AAESVQRVFRG++GR++A L  EV
Sbjct:  216 RDGFDTFVPGKNEGLREGLQKLRAERDRLAGIEEEQRKICREANRLEFVRFARRKWLASDLAAESVQRVFRGHIGRRRAALNVEV 300
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10182.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JR09_9PHAE2.930e-2667.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FML7_ECTSI3.230e-2162.35WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10182contigF-distichus_contig10182:8992..9451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog2880.D7FML7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of myosin-light-chain-phosphatase activity
EggNOG OGsCOG0666@1,KOG0505@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.0676053-CDS-F-distichus_contig10182:8991..90711622928933.0676053-CDS-F-distichus_contig10182:8991..9071Fucus distichus monoicousCDSF-distichus_contig10182 8992..9071 +
1690885072.5368896-CDS-F-distichus_contig10182:8991..90711690885072.5368896-CDS-F-distichus_contig10182:8991..9071Fucus distichus monoicousCDSF-distichus_contig10182 8992..9071 +
1622928933.0793786-CDS-F-distichus_contig10182:9277..94491622928933.0793786-CDS-F-distichus_contig10182:9277..9449Fucus distichus monoicousCDSF-distichus_contig10182 9278..9449 +
1690885072.5518777-CDS-F-distichus_contig10182:9277..94491690885072.5518777-CDS-F-distichus_contig10182:9277..9449Fucus distichus monoicousCDSF-distichus_contig10182 9278..9449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10182.150.1prot_F-distichus_contig10182.150.1Fucus distichus monoicouspolypeptideF-distichus_contig10182 8992..9449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10182.150.1

>prot_F-distichus_contig10182.150.1 ID=prot_F-distichus_contig10182.150.1|Name=mRNA_F-distichus_contig10182.150.1|organism=Fucus distichus monoicous|type=polypeptide|length=84bp
RDGADTYVPAGGGLRQELLRLTAERDRLASIEEAQRETQQTTKRQQFLRF
ARREWLASDRAAESVQRVFRGYVGRKKANLTAEV
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mRNA from alignment at F-distichus_contig10182:8992..9451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10182.150.1 ID=mRNA_F-distichus_contig10182.150.1|Name=mRNA_F-distichus_contig10182.150.1|organism=Fucus distichus monoicous|type=mRNA|length=460bp|location=Sequence derived from alignment at F-distichus_contig10182:8992..9451+ (Fucus distichus monoicous)
CGGGATGGCGCTGATACGTACGTTCCCGCTGGTGGTGGCCTCCGCCAAGA
GCTGCTGCGGCTGACGGCCGAAAGAGACAGGCAGGGTCACAAAGACTTAG
TACAATCATTGTCGGAGTGTTACAGCCCCCCTTCTGGTTATCGACGAGCC
TTGTGCGCCCCAGTAGCCTCCCGATCGATGAATATTTCGTTCTTGACTAT
CTTCGATGCCCTAGGCAGACTCAGCGTCCTACATACGTTCTCTTACCGTC
ACATTGACCGGGCGACATGTTGTTGACCTCACTAAGGCTGGCTAGCATTG
AAGAAGCACAGCGGGAAACACAGCAAACAACAAAACGTCAGCAGTTCCTC
CGCTTTGCCCGGAGGGAATGGCTTGCTTCCGATAGGGCCGCGGAATCAGT
GCAGCGGGTGTTCCGCGGCTACGTCGGCCGGAAGAAGGCGAACTTGACGG
CAGAGGTACG
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Coding sequence (CDS) from alignment at F-distichus_contig10182:8992..9451+

>mRNA_F-distichus_contig10182.150.1 ID=mRNA_F-distichus_contig10182.150.1|Name=mRNA_F-distichus_contig10182.150.1|organism=Fucus distichus monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at F-distichus_contig10182:8992..9451+ (Fucus distichus monoicous)
CGGGATGGCGCTGATACGTACGTTCCCGCTGGTGGTGGCCTCCGCCAAGA
GCTGCTGCGGCTGACGGCCGAAAGAGACAGCGGGATGGCGCTGATACGTA
CGTTCCCGCTGGTGGTGGCCTCCGCCAAGAGCTGCTGCGGCTGACGGCCG
AAAGAGACAGGCTGGCTAGCATTGAAGAAGCACAGCGGGAAACACAGCAA
ACAACAAAACGTCAGCAGTTCCTCCGCTTTGCCCGGAGGGAATGGCTTGC
TTCCGATAGGGCCGCGGAATCAGTGCAGCGGGTGTTCCGCGGCTACGTCG
GCCGGAAGAAGGCGAACTTGACGGCAGAGGTAGCTGGCTAGCATTGAAGA
AGCACAGCGGGAAACACAGCAAACAACAAAACGTCAGCAGTTCCTCCGCT
TTGCCCGGAGGGAATGGCTTGCTTCCGATAGGGCCGCGGAATCAGTGCAG
CGGGTGTTCCGCGGCTACGTCGGCCGGAAGAAGGCGAACTTGACGGCAGA
GGTA
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