mRNA_F-distichus_contig101779.146.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101779.146.1
Unique NamemRNA_F-distichus_contig101779.146.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101779.146.1 vs. uniprot
Match: A0A6H5JA53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA53_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 5.320e-26
Identity = 64/110 (58.18%), Postives = 77/110 (70.00%), Query Frame = 2 
Query:  197 AKRRTGTTFSTTAGGAPVVEALGAYSSAQAVKAK-RPRPHQNKSSLAGGD--DRVQTPQGGRGVTGARGKRPRAPSWEKEYQQIWKSVYDLGAEQFTGKDKRAYEARKIV 517
            A+ R G  FST+AGG  VVEA GAYSSAQ +K K RP+P + K+ + GGD   R               KRPRAPSWE++YQQIWK+V DLG+EQFTGK+K+AYEARKIV
Sbjct:    3 ARARKGHGFSTSAGGVQVVEAPGAYSSAQNLKEKNRPKPRK-KARVDGGDVTKRYDGAAXXXXXXXXXRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIV 111
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BLAST of mRNA_F-distichus_contig101779.146.1 vs. uniprot
Match: D7G4S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.070e-15
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  275 SAQAVKAKRPRPHQNKSSLAGGDDRVQTPQGGRGVTGARG--KRPRAPSWEKEYQQIWKSVYDLGAEQFTGKDKRAYEARKIV 517
            SA   + ++ RP   K++   G D  +   G  G        KRPRAPSWE++YQQIWK+V DLG+EQFTGK+K+AYEARKIV
Sbjct:   16 SAARDREEKNRPKPRKTARVDGGDVTKRSDGAAGAXXXXXXRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIV 98
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101779.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA53_9PHAE5.320e-2658.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4S9_ECTSI1.070e-1551.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101779contigF-distichus_contig101779:954..1695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4602
Ec32 orthologEc-20_000510.1
Exons2
Model size519
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101779.146.1prot_F-distichus_contig101779.146.1Fucus distichus monoicouspolypeptideF-distichus_contig101779 1147..1695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.8763084-UTR-F-distichus_contig101779:953..11461622928932.8763084-UTR-F-distichus_contig101779:953..1146Fucus distichus monoicousUTRF-distichus_contig101779 954..1146 +
1690885072.4294655-UTR-F-distichus_contig101779:953..11461690885072.4294655-UTR-F-distichus_contig101779:953..1146Fucus distichus monoicousUTRF-distichus_contig101779 954..1146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.8910487-CDS-F-distichus_contig101779:1146..12451622928932.8910487-CDS-F-distichus_contig101779:1146..1245Fucus distichus monoicousCDSF-distichus_contig101779 1147..1245 +
1690885072.4445229-CDS-F-distichus_contig101779:1146..12451690885072.4445229-CDS-F-distichus_contig101779:1146..1245Fucus distichus monoicousCDSF-distichus_contig101779 1147..1245 +
1622928932.9008336-CDS-F-distichus_contig101779:1470..16951622928932.9008336-CDS-F-distichus_contig101779:1470..1695Fucus distichus monoicousCDSF-distichus_contig101779 1471..1695 +
1690885072.4554596-CDS-F-distichus_contig101779:1470..16951690885072.4554596-CDS-F-distichus_contig101779:1470..1695Fucus distichus monoicousCDSF-distichus_contig101779 1471..1695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101779.146.1

>prot_F-distichus_contig101779.146.1 ID=prot_F-distichus_contig101779.146.1|Name=mRNA_F-distichus_contig101779.146.1|organism=Fucus distichus monoicous|type=polypeptide|length=108bp
MAKRRTGTTFSTTAGGAPVVEALGAYSSAQAVKAKRPRPHQNKSSLAGGD
DRVQTPQGGRGVTGARGKRPRAPSWEKEYQQIWKSVYDLGAEQFTGKDKR
AYEARKIV
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mRNA from alignment at F-distichus_contig101779:954..1695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101779.146.1 ID=mRNA_F-distichus_contig101779.146.1|Name=mRNA_F-distichus_contig101779.146.1|organism=Fucus distichus monoicous|type=mRNA|length=742bp|location=Sequence derived from alignment at F-distichus_contig101779:954..1695+ (Fucus distichus monoicous)
GCTGCTTCTAGCATTGGACTCATCTAAGGGTGGTAGAGAGCAGGCGAATT
CCATCTTGGCTACACGTGAGAAGACGAGACTGGATCTTTGGGAGCTAGTG
TTAGGTTGATTATTCAGAAAACATCTTTGCCACGCCATCGAGGAGAACTT
GCAATAAGAGGGGCAATCGACAGCAACGAAATAGGAGAACACGATGGCCA
AACGACGGACGGGCACTACGTTCTCCACAACAGCAGGGGGGGCTCCTGTG
GTTGAGGCCCTAGGTGCCTATTCTTCGGCACAGGCTGTGAAGGTAAGACA
TTGCTGAGAAGTGAAAGGTTGGCAGCGAAGCTAGCCCAGTACCGCTGAAA
AAAAAAACATGGCACAAGTACTACCACTCTGTAGTCTATCGAGTTTTTAA
AATATCTGAACGCATCTAGACCTTCTGGTTGGTAGACGCTGACTGTAAAC
CCACTCTGTAATATCATGTATTATTTGTAAATATCACGTTGCCGCATCTA
CCGAACAACCCTTCCAGGCGAAACGTCCTAGGCCGCACCAGAACAAATCC
AGCCTAGCTGGAGGGGATGACCGCGTGCAGACACCTCAGGGGGGGCGAGG
GGTGACCGGAGCGAGAGGGAAACGACCACGCGCGCCGTCATGGGAGAAAG
AGTACCAGCAGATTTGGAAGAGCGTTTATGACCTCGGAGCCGAGCAGTTC
ACGGGGAAGGACAAGAGGGCATACGAGGCCCGCAAGATCGTA
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Coding sequence (CDS) from alignment at F-distichus_contig101779:954..1695+

>mRNA_F-distichus_contig101779.146.1 ID=mRNA_F-distichus_contig101779.146.1|Name=mRNA_F-distichus_contig101779.146.1|organism=Fucus distichus monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at F-distichus_contig101779:954..1695+ (Fucus distichus monoicous)
ATGGCCAAACGACGGACGGGCACTACGTTCTCCACAACAGCAGGGGGGGC
TCCTGTGGTTGAGGCCCTAGGTGCCTATTCTTCGGCACAGGCTGTGAAGA
TGGCCAAACGACGGACGGGCACTACGTTCTCCACAACAGCAGGGGGGGCT
CCTGTGGTTGAGGCCCTAGGTGCCTATTCTTCGGCACAGGCTGTGAAGGC
GAAACGTCCTAGGCCGCACCAGAACAAATCCAGCCTAGCTGGAGGGGATG
ACCGCGTGCAGACACCTCAGGGGGGGCGAGGGGTGACCGGAGCGAGAGGG
AAACGACCACGCGCGCCGTCATGGGAGAAAGAGTACCAGCAGATTTGGAA
GAGCGTTTATGACCTCGGAGCCGAGCAGTTCACGGGGAAGGACAAGAGGG
CATACGAGGCCCGCAAGATCGTAGCGAAACGTCCTAGGCCGCACCAGAAC
AAATCCAGCCTAGCTGGAGGGGATGACCGCGTGCAGACACCTCAGGGGGG
GCGAGGGGTGACCGGAGCGAGAGGGAAACGACCACGCGCGCCGTCATGGG
AGAAAGAGTACCAGCAGATTTGGAAGAGCGTTTATGACCTCGGAGCCGAG
CAGTTCACGGGGAAGGACAAGAGGGCATACGAGGCCCGCAAGATCGTA
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