mRNA_F-distichus_contig101767.144.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-distichus_contig101767.144.1
Unique Name	mRNA_F-distichus_contig101767.144.1
Type	mRNA
Organism	Fucus distichus monoicous (Fucus distichus monoicous)

Homology

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BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: D4HLJ8_ASCNO (NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=D4HLJ8_ASCNO)

HSP 1 Score: 202 bits (514), Expect = 9.060e-64
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+LL SLFMLVGVVYIYLSVG+TSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:   75 RKIRAAYMFFLYTLLGSLFMLVGVVYIYLSVGTTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 183

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BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: A0A2R4QQ88_9PHAE (NADH-ubiquinone oxidoreductase chain 4 n=4 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ88_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.750e-61
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+LL SLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:  156 RKIRAAYMFFLYTLLGSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 264

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BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: D4HLK6_9PHAE (NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=1 Tax=Durvillaea potatorum TaxID=91052 RepID=D4HLK6_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.970e-60
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+LL SLFML+GVVYIYL VGST+YE +SVIKFS YNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPT+GSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:   75 RKIRAAYMFFLYTLLGSLFMLIGVVYIYLVVGSTNYEVMSVIKFSLYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTSGSVILAGILLKLGSYGFLRFSLGLFP 183

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BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: D4HLK3_9PHAE (NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=6 Tax=Phaeophyceae TaxID=2870 RepID=D4HLK3_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.300e-58
Identity = 96/109 (88.07%), Postives = 103/109 (94.50%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+LL SLFML+G+VYIYL  G+T YEALSVI FSSY+QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGL P
Sbjct:   75 RKIRAAYMFFLYTLLGSLFMLIGIVYIYLFAGTTDYEALSVIGFSSYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLLP 183

[Close]

BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: D4HLL6_9PHAE (NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=D4HLL6_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.540e-58
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+L  SLFML+GV+YIYL  GST+YEAL+ + FSSY+QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:   74 RKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGSTNYEALATVGFSSYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 182

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BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: A0A0U1WNP0_SARFS (NADH-ubiquinone oxidoreductase chain 4 n=23 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNP0_SARFS)

HSP 1 Score: 195 bits (495), Expect = 3.270e-58
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+L  SLFML+GVVYIYLSVGSTSYE LS+ KFS+YNQ+WLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:  156 RKIRAAYMFFLYTLFGSLFMLIGVVYIYLSVGSTSYEILSITKFSNYNQRWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 264

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BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: D4HLK7_9PHAE (NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=6 Tax=Ectocarpales TaxID=2877 RepID=D4HLK7_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.720e-58
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+L  SLFML+GV+YIYL  GST+YE+L+ + FSSY+QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:   75 RKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGSTNYESLATVSFSSYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 183

[Close]

BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: D4HLK9_9PHAE (NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=D4HLK9_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 7.470e-58
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+L  SLFML+GV+YIYL  GST+YEAL  + FSSY+QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:   75 RKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGSTNYEALVTVGFSSYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 183

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BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: D4HLM0_SCYLO (NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=D4HLM0_SCYLO)

HSP 1 Score: 184 bits (467), Expect = 8.690e-58
Identity = 92/109 (84.40%), Postives = 102/109 (93.58%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RKIRA+Y+FFLY+L  SLFML+GV+YIYL  GST++E+LS + FS Y+QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:   29 RKIRAAYMFFLYTLFGSLFMLIGVIYIYLFSGSTNFESLSTVDFSFYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 137

[Close]

BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Match: D4HLM3_9PHAE (NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=1 Tax=Syringoderma phinneyi TaxID=27952 RepID=D4HLM3_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 5.220e-57
Identity = 92/109 (84.40%), Postives = 103/109 (94.50%), Query Frame = 1

Query:    1 RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 327
            RK+RA+Y+FFLY+LL SLFML+GVVYIY   GST++EALS+I+FS ++QKWLWLAFFASFAAKVPMLP HIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP
Sbjct:   47 RKVRAAYLFFLYTLLGSLFMLIGVVYIYRFAGSTNFEALSIIEFSFHDQKWLWLAFFASFAAKVPMLPFHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 155

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot

BLAST of mRNA_F-distichus_contig101767.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D4HLJ8_ASCNO	9.060e-64	95.41	NADH-ubiquinone oxidoreductase chain 4 (Fragment) ...	[more]
A0A2R4QQ88_9PHAE	1.750e-61	96.33	NADH-ubiquinone oxidoreductase chain 4 n=4 Tax=Fuc...	[more]
D4HLK6_9PHAE	1.970e-60	89.91	NADH-ubiquinone oxidoreductase chain 4 (Fragment) ...	[more]
D4HLK3_9PHAE	1.300e-58	88.07	NADH-ubiquinone oxidoreductase chain 4 (Fragment) ...	[more]
D4HLL6_9PHAE	2.540e-58	86.24	NADH-ubiquinone oxidoreductase chain 4 (Fragment) ...	[more]
A0A0U1WNP0_SARFS	3.270e-58	89.91	NADH-ubiquinone oxidoreductase chain 4 n=23 Tax=Sa...	[more]
D4HLK7_9PHAE	3.720e-58	85.32	NADH-ubiquinone oxidoreductase chain 4 (Fragment) ...	[more]
D4HLK9_9PHAE	7.470e-58	86.24	NADH-ubiquinone oxidoreductase chain 4 (Fragment) ...	[more]
D4HLM0_SCYLO	8.690e-58	84.40	NADH-ubiquinone oxidoreductase chain 4 (Fragment) ...	[more]
D4HLM3_9PHAE	5.220e-57	84.40	NADH-ubiquinone oxidoreductase chain 4 (Fragment) ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig101767	contig	F-distichus_contig101767:2..328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	147.1
Seed ortholog evalue	4.7e-33
Seed eggNOG ortholog	70448.Q0P3F6
Preferred name	nad4
KEGG rclass	RC00061
KEGG ko	ko:K03881
KEGG TC	3.D.1.6
KEGG Reaction	R11945
KEGG Pathway	ko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG Module	M00142
Hectar predicted targeting category	signal anchor
EggNOG free text desc.	Proton-conducting membrane transporter
EggNOG OGs	34JA9@3041,37KP8@33090,COG1008@1,KOG4845@2759
EC	1.6.5.3
COG Functional cat.	C
Best tax level	Chlorophyta
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03029
Exons	1
Model size	327
Cds size	327
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928932.767023-CDS-F-distichus_contig101767:1..328	1622928932.767023-CDS-F-distichus_contig101767:1..328	Fucus distichus monoicous	CDS	F-distichus_contig101767 2..328 +
1690885072.3566132-CDS-F-distichus_contig101767:1..328	1690885072.3566132-CDS-F-distichus_contig101767:1..328	Fucus distichus monoicous	CDS	F-distichus_contig101767 2..328 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig101767.144.1	prot_F-distichus_contig101767.144.1	Fucus distichus monoicous	polypeptide	F-distichus_contig101767 2..328 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-distichus_contig101767:2..328+
coding sequence from alignment at F-distichus_contig101767:2..328+

protein sequence of mRNA_F-distichus_contig101767.144.1

>prot_F-distichus_contig101767.144.1 ID=prot_F-distichus_contig101767.144.1|Name=mRNA_F-distichus_contig101767.144.1|organism=Fucus distichus monoicous|type=polypeptide|length=109bp
RKIRASYIFFLYSLLVSLFMLVGVVYIYLSVGSTSYEALSVIKFSSYNQK
WLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGF
LRFSLGLFP

mRNA from alignment at F-distichus_contig101767:2..328+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-distichus_contig101767.144.1 ID=mRNA_F-distichus_contig101767.144.1|Name=mRNA_F-distichus_contig101767.144.1|organism=Fucus distichus monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at F-distichus_contig101767:2..328+ (Fucus distichus monoicous)
CGCAAAATACGTGCATCTTATATTTTTTTCCTATACTCCTTGCTAGTCTC
ATTATTTATGCTTGTAGGGGTAGTATACATTTATTTATCTGTCGGTAGTA
CAAGTTATGAAGCTTTGTCTGTTATAAAGTTTTCTTCTTATAATCAGAAA
TGGCTGTGGTTAGCTTTTTTTGCGTCATTTGCAGCTAAAGTGCCGATGTT
ACCGGTTCATATATGGTTACCGGAAGCTCATGTAGAGGCTCCTACAGCAG
GCTCGGTTATTTTAGCCGGTATTCTTCTAAAATTAGGATCTTATGGGTTT
CTGCGTTTTTCTTTAGGCCTTTTTCCT

Coding sequence (CDS) from alignment at F-distichus_contig101767:2..328+

>mRNA_F-distichus_contig101767.144.1 ID=mRNA_F-distichus_contig101767.144.1|Name=mRNA_F-distichus_contig101767.144.1|organism=Fucus distichus monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at F-distichus_contig101767:2..328+ (Fucus distichus monoicous)
CGCAAAATACGTGCATCTTATATTTTTTTCCTATACTCCTTGCTAGTCTC
ATTATTTATGCTTGTAGGGGTAGTATACATTTATTTATCTGTCGGTAGTA
CAAGTTATGAAGCTTTGTCTGTTATAAAGTTTTCTTCTTATAATCAGAAA
TGGCTGTGGTTAGCTTTTTTTGCGTCATTTGCAGCTAAAGTGCCGATGTT
ACCGGTTCATATATGGTTACCGGAAGCTCATGTAGAGGCTCCTACAGCAG
GCTCGGTTATTTTAGCCGGTATTCTTCTAAAATTAGGATCTTATGGGTTT
CTGCGTTTTTCTTTAGGCCTTTTTCCTCGCAAAATACGTGCATCTTATAT
TTTTTTCCTATACTCCTTGCTAGTCTCATTATTTATGCTTGTAGGGGTAG
TATACATTTATTTATCTGTCGGTAGTACAAGTTATGAAGCTTTGTCTGTT
ATAAAGTTTTCTTCTTATAATCAGAAATGGCTGTGGTTAGCTTTTTTTGC
GTCATTTGCAGCTAAAGTGCCGATGTTACCGGTTCATATATGGTTACCGG
AAGCTCATGTAGAGGCTCCTACAGCAGGCTCGGTTATTTTAGCCGGTATT
CTTCTAAAATTAGGATCTTATGGGTTTCTGCGTTTTTCTTTAGGCCTTTT
TCCT