mRNA_F-distichus_contig10175.142.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10175.142.1
Unique NamemRNA_F-distichus_contig10175.142.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: A0A6H5JQ34_9PHAE (Pterin-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ34_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.190e-28
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   40 SIELLRSLDTIAARVRSPLLVGPSRKRFIGELTGEADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAIR 276
            S+ L+R LD IA  V SPLLVGPSRKRFIGELT E+D  +RDWGT GACCS A+RG K VRVHNV+G  QALAV++AIR
Sbjct:  331 SLLLMRQLDVIAKHVGSPLLVGPSRKRFIGELTSESDPVQRDWGTVGACCSAAERGVKLVRVHNVKGAVQALAVADAIR 409          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: D8LRL2_ECTSI (Pterin-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL2_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 7.240e-28
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   40 SIELLRSLDTIAARVRSPLLVGPSRKRFIGELTGEADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAIR 276
            S+ L+R LD IA  V SPLLVGPSRKRFIGELT E+D  +RDWGT GACCS A+RGAK VRVHNV+G   ALAVS+AIR
Sbjct:  499 SLLLMRELDVIAKHVGSPLLVGPSRKRFIGELTSESDPIQRDWGTVGACCSAAERGAKLVRVHNVKGAVLALAVSDAIR 577          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: UPI0019F14517 (Dihydropteroate synthase n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI0019F14517)

HSP 1 Score: 83.2 bits (204), Expect = 2.980e-17
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   40 SIELLRSLDTIAARVRSPLLVGPSRKRFIGELTGEADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAI 273
            ++ELLR    +   +  PLL+GPSRKRFIGE+  + D  +RDWGTA ACC+    GA  VRVH V GIR A+ V++A+
Sbjct:  179 NLELLRRAGALRD-LGCPLLIGPSRKRFIGEILDQPDPQQRDWGTAAACCAAVAAGADLVRVHQVAGIRDAIRVADAL 255          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: A0A7S1UFL4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFL4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-16
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    4 PRVGVFGVEWWGSIELLRSLDTIAA---------RVRSPLLVGPSRKRFIGELTGEADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVS 264
            P +G    +   ++ELLR L T            +V  PLLVG SRKRFIGELTGE +A++RDWG+ GA  + +  GA  VRVHNV G +QAL VS
Sbjct:  356 PGIGFAKKDAAQNLELLRRLRTFVECEELSYDPPQVPCPLLVGASRKRFIGELTGETEAAKRDWGSVGAALAASAGGAFMVRVHNVPGTKQALQVS 451          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: A0A835YYJ5_9STRA (Dihydropteroate synthase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYJ5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.020e-16
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   40 SIELLRSLDTIAARVRSPLLVGPSRKRFIGELTG----------------------------EADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAIRGA 282
            S++LL  L  +AA  R PLLVGPSRKRF+G + G                                  RDWGTAGA C+ A+RGA+ VRVH+VRG++ AL V +A+R A
Sbjct:  430 SVQLLAGLVRVAAATRCPLLVGPSRKRFVGAVAGGXXXXXXXXXXXXXXXXXXXXXXXXXGNALTLEDRDWGTAGAACAAAERGARIVRVHHVRGVKHALRVVDAVRVA 538          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: D0LWB9_HALO1 (Dihydropteroate synthase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) TaxID=502025 RepID=D0LWB9_HALO1)

HSP 1 Score: 80.1 bits (196), Expect = 7.310e-16
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    4 PRVGVFGVEWWGSIELLRSLDTIAARVRSPLLVGPSRKRFIGELTGE--ADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAIRGAL 285
            P +G FG     ++EL+R    + A +  P+++GPSRKRFI EL G+   D + RD GT GAC + A  GA+ VRVH+V G+  AL V EA RG+L
Sbjct:  193 PGLG-FGKRLPQNLELMRRAGQLGAALGCPIMLGPSRKRFIAELCGDDARDMALRDRGTVGACLAAAASGAQLVRVHDVAGLTPALRVFEAARGSL 287          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: A0A7C5JSG9_9BACT (Dihydropteroate synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C5JSG9_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 2.450e-15
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    4 PRVGVFGVEWWGSIELLRSLDTIAARVRSPLLVGPSRKRFIGELTGEADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAI 273
            P +G FG     ++E++ +LD +A ++  P++VGPSRKRFIGELT EA    R  GT  AC     RGA   RVH+VR ++QALAV+ ++
Sbjct:  114 PGIG-FGKTLEHNLEIIANLDKLA-QMNLPIMVGPSRKRFIGELTDEAIPENRTAGTLAACLESFRRGASIFRVHDVREVKQALAVASSL 201          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: A0A349UMP1_9BACT (Dihydropteroate synthase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A349UMP1_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 4.790e-15
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    4 PRVGVFGVEWWGSIELLRSLDTIAARVRSPLLVGPSRKRFIGELTGEADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAIRGA 282
            P +G FG     ++ LL  L  +AA  R P+LVGPSRKRF+GELTG  D ++R   T  AC     RGA   RVH+V  +  ALAV++A+ GA
Sbjct:  169 PGIG-FGKTLEHNLALLAGLGELAALGR-PVLVGPSRKRFLGELTGRTDPAQRISATVAACLEARKRGATIFRVHDVAALADALAVAQAVEGA 259          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: F0Y0B3_AURAN (Pterin-binding domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0B3_AURAN)

HSP 1 Score: 78.6 bits (192), Expect = 5.790e-15
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    4 PRVGVFGVEWWGSIELLRSLDTIAARVRS-PLLVGPSRKRFIGELTGEADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAI 273
            P VG F  +   ++ELLR L  +  +    PLL+G SRKRF+G+LTGE DA+RRD  TAGAC +     A  VRVH+VR  R ALA ++AI
Sbjct:  362 PGVG-FAKDTAQNVELLRGLGEVRRKTGDLPLLLGVSRKRFLGDLTGEPDAARRDAATAGACAATVPH-ADVVRVHDVRAARHALAAADAI 450          
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Match: A0A841H1X7_9BACT (Dihydropteroate synthase n=1 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841H1X7_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 7.260e-15
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   40 SIELLRSLDTIAARVRSPLLVGPSRKRFIGELTGEADASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAI 273
            ++EL+  +  + AR+  P+L+G SRK FIG L G   A  RD GT GAC +   RGA+  RVH+VRG RQAL V+EA+
Sbjct:  219 NLELIAGIGRLRARLGRPVLLGASRKAFIGALLGGVPADARDAGTVGACVAGLARGARLFRVHDVRGARQALDVAEAV 296          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10175.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ34_9PHAE2.190e-2870.89Pterin-binding domain-containing protein n=1 Tax=E... [more]
D8LRL2_ECTSI7.240e-2872.15Pterin-binding domain-containing protein n=1 Tax=E... [more]
UPI0019F145172.980e-1751.28Dihydropteroate synthase n=1 Tax=Gloeomargaritacea... [more]
A0A7S1UFL4_9STRA1.900e-1648.96Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A835YYJ5_9STRA2.020e-1642.20Dihydropteroate synthase-like protein n=1 Tax=Trib... [more]
D0LWB9_HALO17.310e-1646.88Dihydropteroate synthase n=1 Tax=Haliangium ochrac... [more]
A0A7C5JSG9_9BACT2.450e-1546.67Dihydropteroate synthase n=1 Tax=Phycisphaerae bac... [more]
A0A349UMP1_9BACT4.790e-1547.31Dihydropteroate synthase n=1 Tax=Phycisphaerales b... [more]
F0Y0B3_AURAN5.790e-1550.55Pterin-binding domain-containing protein n=1 Tax=A... [more]
A0A841H1X7_9BACT7.260e-1550.00Dihydropteroate synthase n=1 Tax=Longimicrobium te... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10175contigF-distichus_contig10175:251..911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue4.6e-24
Seed eggNOG ortholog2880.D8LRL2
Preferred nameFOL1
KEGG rclassRC00002,RC00017,RC00121,RC00721,RC00842,RC00943
KEGG koko:K13939,ko:K13941
KEGG ReactionR03066,R03067,R03503,R03504
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00840
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003848,GO:0004150,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016772,GO:0016778,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019752,GO:0031967,GO:0031975,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity
EggNOG OGsCOG0294@1,KOG2544@2759
EC2.5.1.15,2.7.6.3,4.1.2.25
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.6564114-CDS-F-distichus_contig10175:250..3821622928932.6564114-CDS-F-distichus_contig10175:250..382Fucus distichus monoicousCDSF-distichus_contig10175 251..382 +
1690885072.273039-CDS-F-distichus_contig10175:250..3821690885072.273039-CDS-F-distichus_contig10175:250..382Fucus distichus monoicousCDSF-distichus_contig10175 251..382 +
1622928932.6702802-CDS-F-distichus_contig10175:752..9111622928932.6702802-CDS-F-distichus_contig10175:752..911Fucus distichus monoicousCDSF-distichus_contig10175 753..911 +
1690885072.2848141-CDS-F-distichus_contig10175:752..9111690885072.2848141-CDS-F-distichus_contig10175:752..911Fucus distichus monoicousCDSF-distichus_contig10175 753..911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10175.142.1prot_F-distichus_contig10175.142.1Fucus distichus monoicouspolypeptideF-distichus_contig10175 251..911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10175.142.1

>prot_F-distichus_contig10175.142.1 ID=prot_F-distichus_contig10175.142.1|Name=mRNA_F-distichus_contig10175.142.1|organism=Fucus distichus monoicous|type=polypeptide|length=97bp
MPRVGVFGVEWWGSIELLRSLDTIAARVRSPLLVGPSRKRFIGELTGEAD
ASRRDWGTAGACCSVADRGAKFVRVHNVRGIRQALAVSEAIRGALY*
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mRNA from alignment at F-distichus_contig10175:251..911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10175.142.1 ID=mRNA_F-distichus_contig10175.142.1|Name=mRNA_F-distichus_contig10175.142.1|organism=Fucus distichus monoicous|type=mRNA|length=661bp|location=Sequence derived from alignment at F-distichus_contig10175:251..911+ (Fucus distichus monoicous)
ATGCCCCGCGTCGGGGTTTTCGGCGTTGAATGGTGGGGCAGCATTGAGCT GTTGCGGAGCCTCGATACCATCGCGGCTCGCGTGAGGAGCCCTCTCCTTG TGGGTCCCAGCCGCAAACGGTTCATCGGGGAGGTGAGCGAAATGTTTTCG TACGTACCTTCGGGATGGCTGTTGTACTTGTCGCTGCTTCGGTAGGAATT TTTCTTCATTCTTTCTGTTTTCGCCCGCGACGCTGTGCTCGCGCGATGGT CGTACAATTTCGTTACGAAAGCTGTCTTATTTCCATCCGTTGGGTTTTTG ACATATCAAGCACTCCGTGGCGGCCATCAGCCCACGGACAAATAAATGTC CATGTTCGAAGTTGCGTATCGTGGAGAAAATGAAAAACGAATTGGATATG GATGTGCTTAGGGTTGTATGGGCGTTTTCTTTGTTGTTGTGAGGCTATGA GGGCCGCCGTATTCGCACCAGGCTGAACGCGAGCAACCTCAAATTTTCGC AGTTGACTGGAGAAGCGGACGCCTCCCGTCGGGACTGGGGTACAGCAGGG GCGTGCTGCTCCGTCGCTGATCGCGGCGCGAAATTCGTCCGTGTTCATAA CGTCCGAGGTATTCGTCAGGCCTTGGCCGTCTCCGAGGCGATACGGGGCG CGCTCTACTGA
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Coding sequence (CDS) from alignment at F-distichus_contig10175:251..911+

>mRNA_F-distichus_contig10175.142.1 ID=mRNA_F-distichus_contig10175.142.1|Name=mRNA_F-distichus_contig10175.142.1|organism=Fucus distichus monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at F-distichus_contig10175:251..911+ (Fucus distichus monoicous)
ATGCCCCGCGTCGGGGTTTTCGGCGTTGAATGGTGGGGCAGCATTGAGCT
GTTGCGGAGCCTCGATACCATCGCGGCTCGCGTGAGGAGCCCTCTCCTTG
TGGGTCCCAGCCGCAAACGGTTCATCGGGGAGATGCCCCGCGTCGGGGTT
TTCGGCGTTGAATGGTGGGGCAGCATTGAGCTGTTGCGGAGCCTCGATAC
CATCGCGGCTCGCGTGAGGAGCCCTCTCCTTGTGGGTCCCAGCCGCAAAC
GGTTCATCGGGGAGTTGACTGGAGAAGCGGACGCCTCCCGTCGGGACTGG
GGTACAGCAGGGGCGTGCTGCTCCGTCGCTGATCGCGGCGCGAAATTCGT
CCGTGTTCATAACGTCCGAGGTATTCGTCAGGCCTTGGCCGTCTCCGAGG
CGATACGGGGCGCGCTCTACTGATTGACTGGAGAAGCGGACGCCTCCCGT
CGGGACTGGGGTACAGCAGGGGCGTGCTGCTCCGTCGCTGATCGCGGCGC
GAAATTCGTCCGTGTTCATAACGTCCGAGGTATTCGTCAGGCCTTGGCCG
TCTCCGAGGCGATACGGGGCGCGCTCTACTGA
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