mRNA_F-distichus_contig101740.141.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101740.141.1
Unique NamemRNA_F-distichus_contig101740.141.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.090e-18
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   34 FDFLQYWEAQGTDGVDPS-GKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLI 282
            F+ L YW  +GTD V  + GK   PA  P++  +ARLY GI+ TSCQ+ERNF AL  ++  +    L  K E M+ +RLNRHL+
Sbjct:  528 FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 611
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BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.130e-18
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   34 FDFLQYWEAQGTDGVDPS-GKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLI 282
            F+ L YW  +GTD V  + GK   PA  P++  +ARLY GI+ TSCQ+ERNF AL  ++  +    L  K E M+ +RLNRHL+
Sbjct:  723 FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 806
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BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.150e-18
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   34 FDFLQYWEAQGTDGV-DPSGKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLI 282
            F+ L +W  +GTD V   +G    PA  P++  +ARL+ GI+ +SCQ+ERNF AL  ++  +    L+ K E M+L+RLNRHL+
Sbjct:  146 FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 229
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BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.780e-17
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   34 FDFLQYWEAQGTDGV-DPSGKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLI 282
            F+ L +W  +GTD V   +G    PA  P++  +ARL+ GI+ +SCQ+ERNF AL  ++  +    L+ K E M+L+RLNRHL+
Sbjct:  711 FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 794
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BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 7.900e-16
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   31 KFDFLQYWEAQGTDGVDP-SGKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALK--------QVLSDMHAGTLAHKTENMLLLRLNRHLIP 285
            + + L YW   GTD +D  +G+ V+ ARWPH+ L+ARLYAGID+TS Q ER+F             V S    G    + E MLL+RLNRH++P
Sbjct:  807 RHELLSYWRLHGTDTLDSGTGEVVLAARWPHLALVARLYAGIDSTSRQGERHFGGGSGGGAELGAAVRSLQRGGMPPWRIEQMLLVRLNRHVVP 900
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BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.910e-14
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   10 AAPKNDSKFDFLQYWEAQGTDGVDPSGKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLIP 285
            A P  D  +D L +W   G+  +DP G  V  A++P + +LAR+Y  ID+TSCQSER F  L  V +++    +  + E ++ LR N HLIP
Sbjct:  169 AVPAKD--YDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIP 258
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BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.860e-14
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   10 AAPKNDSKFDFLQYWEAQGTDGVDPSGKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLIP 285
            A P  D  +D L +W   G+  +DP G  V  A++P + +LAR+Y  ID+TSCQSER F  L  V +++    +  + E ++ LR N HLIP
Sbjct:  171 AVPAKD--YDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIP 260
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BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.810e-13
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   61 QGTDGVDPS-GKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLI 282
            +GT  V P+ GK   PA  P++  +ARLY GI+ TSCQ+ERNF A   ++  +    L  K E  + +RLNRHL+
Sbjct:  326 RGTSSVSPTTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLV 400
[Close]
BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.610e-12
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   34 FDFLQYWEAQGTDGVDPSGKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLIP 285
            F  L++W+ +           V P   PH+ L+ARL+ GI++TSCQ+ERNF AL  ++  + +  L  K E ++ LRLNR  IP
Sbjct:  386 FSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIP 468
[Close]
BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.960e-12
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   34 FDFLQYWEAQGTDGVDPSGKAVVPARWPHIGLLARLYAGIDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLIP 285
            F  L++W+ +           V P   PH+ L+ARL+ GI++TSCQ+ERNF AL  ++  + +  L  K E ++ LRLNR  IP
Sbjct:  714 FSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIP 796
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101740.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE2.090e-1846.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.130e-1846.43Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE9.150e-1842.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE4.780e-1742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G031_ECTSI7.900e-1644.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L256_9PHAE1.910e-1440.22Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6H5L902_9PHAE2.860e-1440.22Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KAS2_9PHAE6.810e-1344.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE8.610e-1239.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE8.960e-1239.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101740contigF-distichus_contig101740:464..760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size299
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.6278503-CDS-F-distichus_contig101740:463..7601622928932.6278503-CDS-F-distichus_contig101740:463..760Fucus distichus monoicousCDSF-distichus_contig101740 464..760 +
1690885072.258229-CDS-F-distichus_contig101740:463..7601690885072.258229-CDS-F-distichus_contig101740:463..760Fucus distichus monoicousCDSF-distichus_contig101740 464..760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101740.141.1prot_F-distichus_contig101740.141.1Fucus distichus monoicouspolypeptideF-distichus_contig101740 464..760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101740.141.1

>prot_F-distichus_contig101740.141.1 ID=prot_F-distichus_contig101740.141.1|Name=mRNA_F-distichus_contig101740.141.1|organism=Fucus distichus monoicous|type=polypeptide|length=99bp
MKEAAPKNDSKFDFLQYWEAQGTDGVDPSGKAVVPARWPHIGLLARLYAG
IDTTSCQSERNFPALKQVLSDMHAGTLAHKTENMLLLRLNRHLIPGFAR
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mRNA from alignment at F-distichus_contig101740:464..760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101740.141.1 ID=mRNA_F-distichus_contig101740.141.1|Name=mRNA_F-distichus_contig101740.141.1|organism=Fucus distichus monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at F-distichus_contig101740:464..760+ (Fucus distichus monoicous)
ATGAAGGAAGCGGCCCCCAAGAACGACTCCAAGTTCGACTTCCTCCAGTA
CTGGGAAGCGCAGGGCACGGATGGGGTAGACCCGTCGGGGAAGGCTGTAG
TGCCTGCCCGCTGGCCACACATCGGGTTGCTTGCAAGGTTGTATGCAGGC
ATCGATACCACTAGTTGTCAATCTGAGAGGAACTTTCCCGCCCTTAAGCA
GGTCCTTAGTGATATGCACGCCGGTACTTTGGCTCACAAGACGGAGAATA
TGCTGTTGCTCAGGCTCAACAGGCACCTTATTCCCGGATTTGCGAGG
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Coding sequence (CDS) from alignment at F-distichus_contig101740:464..760+

>mRNA_F-distichus_contig101740.141.1 ID=mRNA_F-distichus_contig101740.141.1|Name=mRNA_F-distichus_contig101740.141.1|organism=Fucus distichus monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at F-distichus_contig101740:464..760+ (Fucus distichus monoicous)
ATGAAGGAAGCGGCCCCCAAGAACGACTCCAAGTTCGACTTCCTCCAGTA
CTGGGAAGCGCAGGGCACGGATGGGGTAGACCCGTCGGGGAAGGCTGTAG
TGCCTGCCCGCTGGCCACACATCGGGTTGCTTGCAAGGTTGTATGCAGGC
ATCGATACCACTAGTTGTCAATCTGAGAGGAACTTTCCCGCCCTTAAGCA
GGTCCTTAGTGATATGCACGCCGGTACTTTGGCTCACAAGACGGAGAATA
TGCTGTTGCTCAGGCTCAACAGGCACCTTATTCCCGGATTTGCGAGGATG
AAGGAAGCGGCCCCCAAGAACGACTCCAAGTTCGACTTCCTCCAGTACTG
GGAAGCGCAGGGCACGGATGGGGTAGACCCGTCGGGGAAGGCTGTAGTGC
CTGCCCGCTGGCCACACATCGGGTTGCTTGCAAGGTTGTATGCAGGCATC
GATACCACTAGTTGTCAATCTGAGAGGAACTTTCCCGCCCTTAAGCAGGT
CCTTAGTGATATGCACGCCGGTACTTTGGCTCACAAGACGGAGAATATGC
TGTTGCTCAGGCTCAACAGGCACCTTATTCCCGGATTTGCGAGG
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