mRNA_F-distichus_contig1017.140.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig1017.140.1 vs. uniprot
Match: A0A6H5LGE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE7_9PHAE) HSP 1 Score: 717 bits (1850), Expect = 3.400e-227 Identity = 572/1520 (37.63%), Postives = 769/1520 (50.59%), Query Frame = 1
Query: 913 DGAAEQLPPLLRSFDDDWQAFNEREEASSDPWDPPQVVPLVATGSSPPLALPVTANPAVVDGSGRCEVMLARRVAVGETVKELHLLPASPSPSAINTNINRDGALSHSDAEHSSDRPFRMVLITTRGATVCLVCAARSPTSHYAAPTSTSTATAVQPLSPLLPLERPHSGSWCSVVSASPPSSPSELPPTPTSASLSGKAARSPLKAGDRRGRPGVSYGKGDVTGQEEELEELEEIHQAVFLRRCFRFNHDVVRAAVHGCFLFVLTVEGIQVWTFPPDRPSMILGREASGVE-------GIGKTMPG--TPRPCLLHMQRLEVDGVLPRSPPRCLLVVGGVRQTVLLFPPAQ----DQVTIINSVCPGNLCSVYSTARPGLIAENACSALPSTTEGLMQWTDGNQHNSQAETMKAKLKAWQKGFCAGRSGRTGGPYGGSGDAFPVGLALALRVGTPTEAFRRLADGEVRARRPLSVSALSAFVSAAEGLHTCLLEEAAESWRVAFSQKSFGGDGGGDRDPTGRARMFTDAVALGGVCPEVGKEMRIETVLGGLTRCWRLNREGSRCAALVGRLMLEEAEGAAAAVGSQNAINNPCTAASVVAGQAYARACAWMLASRESVANSFERLQKAAESVTTALKAAGNTPEVQQAERVAPATVSNSTDDRSTASLEGCFALE-NIQAGLFRALYDDYLLPALGMASVAGSSVSSIHV--SLPPLTERRQRRLEDRHQEASLEGVIENMVEYLHARDMQWYTQPTELRQIGRGEARCSTSLAAAVVCAGRVPWAACPLGLRHALAALEEQERALEETVGAIRNSRSRSKTGGSGSDSINLLSSGFLT-LEGVACGSDPVGGAFLTRSGNHAPAE--EGRRPA------APAIQWIATARMVLTAYSEEMNLEEMGGRARGSNN-QVGLTVVDRIVELACERHPSLVISPKSGAGGSLAKALLGMGRTRPLVSALVRLTSRNAGGDCGTVGEAPTGPHMAQELLQLKEHCFAPPVDPLQALLVFGIPGRQIAARLDSLRRSSLDAS---LNTV-IPPGSFESQNSDTFPQSGGGGVDRSPDGDTQYSLLQAASRDFLSRRCAASLARGGDLVAWEEERLSNAWGAPEAWQAAVASNRALDRAILRYLIGAHLDDLRALEHPAISGV----------SGRGAEMAPMSDDSSGNGRYEQPGTAVYGGRGSWAEAIFPLLTAQVSKGRGGAAEAHLDAITSLVREVTWQGVYPEGIGRGAGGNWRGIRPSEASEVVIEAKRRLPVSATARGLTTLSTVETMMGREDADVDAGDDDDRRSIVPWGCGGAGTEISRSPWPWGPRAVPPSAVGALVALAAALPAAGNLLGGLEVMLQVADEVVKAAKAEAAXXXXXXXXXKAGRGNGRQVERSPADASTTITGSGVASAELLVAERIQEVSVIAKRALLLYSVEYCGRNPELWASVTEHIRHTVDGRKGRAGSGSTSTGAERLVEALLRQCGEEIGGRALVRALPDEMDIVECLDVVEQNLV 5352
D ++ Q PPLLRSFDDDW+A R E +P +P + PL S + PV++N V+D G C+V+LARRV GE VKELHL P S S ++ H+ D G+S G V ++L VFLR+ +RFN+D++ A++ FLFVLTVEG++VWT+P + + G+E E G+ + P PRPCLLH+Q+LEVDGVLPRSP + ++ + G +LLFPP D + + C L S + P +A PS T L W GN + Q + KL AW+ GFC G G Y P LAL LR+ +PT A R L+ E + RP F+SAAEGLH L E + +WR +A G V +++RIET+L GL CWRL R +RCA+L+G+L+LE A AA Q + C G AY RAC+W+LAS E V SF LQ A V+ A G+ E+ V P+ VS D+ + L +++ L RA+Y+ YLLP+ G+ G + + S P++E + Q SL+ V+ +V YLH D+Q + L + G R T L+ AVV A R PW CP+ L AL AL+EQ++ L E+ +S RS +G SG+ S G L L+ G+ +G+ PA + R P +P +WIA AR +L+ Y E+M GG+ + L +I++LACERHP+LV +P G G LA+ LL GR +P+V+ALV LTS GG GE GP A ELLQLK+ CF+P +DPLQAL VFG PGRQIA RLDS RR+SLD S +T+ PG F D + Q+ VD P+ ++ L AA+RDFLSRRC+ASLA L +ER+S A GAPEAW+A++A RALDRA+LRYLI AHLDDLR+LE+ A +GR + D+ N ++ + +WA+AI PLL+ QVSK RG AE H+DAI LVRE+T +G + GN + A EVV EAKRRLP + + T S D D + +DD + PWG GG GT R+PWPWGPRAVP SAVGA++ALAAALP AG LL GL+VMLQV +EVV AAKAE+AXXXXXXXXX +G+ R + D+ +GVA A ++EVS A+RALLLY+ EYCG++P+ WASVTEH+R++ + GS + LV ALL++CG E+GG+ALVRALP+ +D+++CLD +E++L+
Sbjct: 73 DDSSAQPPPLLRSFDDDWEAIRTRREYVPEPLEP-EGAPLATEPYS--TSWPVSSNSTVLDRMGACDVVLARRVGPGEVVKELHLFPIHESSSTADS--------------HAVDG--------------------------------------------------------------------------------------------------GISAGV--VAEYAQQL--------VVFLRQSYRFNNDMLVASITSAFLFVLTVEGVEVWTYPSENLPVTDGQERKWSEDGRFGDMGVPLSSPAHPPPRPCLLHVQKLEVDGVLPRSPVQIMVPLAGATPGLLLFPPPLAAKGDTLAFLTHQCQRRLRSPGAADEPIANGISAFCKPPSPTTPLSAWPGGNNNLGQ-DCWSRKLAAWRNGFC-GLGGNKATEY------TPSPLALFLRLRSPTAAVRLLSVAEECSERPHPAKVSDMFLSAAEGLHNALTFEVSAAWRAGVGLAG-----------------TASTLAGHGSSSSVAEQVRIETILPGLVNCWRLQRVAARCASLLGQLLLETALSAA----EQGSAEGDCAT-----GLAYTRACSWLLASGEPVVESFASLQDVAARVSVA----GDETELTA---VVPSFVSLDDDEEGNSYLTTAEVPPLDLEELLPRAMYELYLLPSFGVRDTPGVGPPRLALDSSAIPISESGEP------QSLSLDDVLSGLVSYLHREDIQRLSLRPGLPSVWDGTPRY-TPLSTAVVYASRAPWTECPVALSQALLALDEQDKTLNEST----SSNIRSNSGSSGASLSRKTSRGGLKRLKSKTRPRHERSGS----TGHQKPASSLDDRDPTDDETTLSPTQEWIAVARAILSGYLEQMG--GTGGQPEAPRQGRSALAADSQILQLACERHPTLV-APLRGGAGPLARDLLAAGRVKPVVAALVTLTSCGDGGGRAGCGEGSFGPQKAPELLQLKDDCFSPKIDPLQALYVFGAPGRQIAERLDSFRRASLDLSGPFCSTIGARPGLFHD---DAYEQNSEA-VDSRPN-PSETKSLSAAARDFLSRRCSASLATAA-LSVRHQERISQALGAPEAWRASLARTRALDRAVLRYLISAHLDDLRSLENSAAGNPKTPDGKPTADTGRSSGSVKTGSDTRTNNHRDREYS-------TWADAIVPLLSGQVSKARG--AEEHVDAILRLVREITRRGRSANN--SLSDGNRCSMNHEVAEEVVTEAKRRLPATELSPASTGASV--------DYDGNGHINDDTQ---PWGSGGEGTGKGRAPWPWGPRAVPASAVGAILALAAALPPAGKLLAGLDVMLQVGEEVVAAAKAESAXXXXXXXXXXXXKGSARAGDVIRKDSGLD---AGVAVAS------VEEVSCAAERALLLYAGEYCGKDPDRWASVTEHVRNSRASQVREGGS--VDAPGQDLVRALLQRCGAELGGQALVRALPENLDLMDCLDEIERSLL 1369
BLAST of mRNA_F-distichus_contig1017.140.1 vs. uniprot
Match: D7FV98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV98_ECTSI) HSP 1 Score: 252 bits (644), Expect = 4.940e-66 Identity = 234/669 (34.98%), Postives = 320/669 (47.83%), Query Frame = 1
Query: 601 QSPKANNPRGRS-ESSRTSRSSTQL---------KDFPPKGTSRAAASGKAKTSTRRRKEAGGISDPEREMSKXXXXXXXXXXXXXLVEGAITDAEDMVVCVVHPEEDSAVEAADGAAEQLPPLLRSFDDDWQAFNEREEASSDPWDPPQVVPLVATGSSPPLALPVTANPAVVDGSGRCEVMLARRVAVGETVKELHLLP----ASPSPSAINTNINRDGALSHSDAEHSSDRPFRMVLITTRGATVCLVCAARSPTSHYAAPTSTSTATAVQPLSPLLPLERPHSGSWCSVVSASPPSSPSELPPTPTSASLSGKAARSPLKAGDRRGRPGVSYGKGDVTGQEEELEELEEIHQAVFLRRCFRFNHDVVRAAVHGCFLFVLTVEGIQVWTFPPDRPSMILGREASGVE-------GIGKTMPG--TPRPCLLHMQRLEVDGVLPRSPPRCLLVVGGVRQTVLLFPPAQDQVTIINSVCPGNLCSVYSTARPGLIAENACSALPSTTEGLMQWTDGNQHNSQAETMKAKLKAWQKGFCAGRSGRTGGPYGGSGDAFPVGLALALRVGTPTEAFRRLADGEVRARRPLSVSALSAFVSAAEGLHTCLLEEAAESWRVAF-----------------SQKSFGGDGGGDRDPT-GRARMFTDAVALGGVC 2484
QSPKA +P+ SS +S+T+L KDFPPK +R SGK+K + GG S P + +VE AI++AED+VVCV+HP + + +A + PPLLRSFDDDW+A R E +P +P + PL S +LPV+ N V+D G C+V+LARRV GE VKELHLLP P S + +RD A SH D R VL+T++GATVCLV AA + + ++S A+ S RP S S+ ++PP + S S + A D G+S G G E+ ++L VFLR+ +RFN+D++ A++ FLFVLTVEG++VWT+P + + G+ E G+ + P +PRPCLLH+Q+LEVDGVLPRSP RC++ +GG +LLFPP +P PS T L W G+ + Q + K AW+ GFC G G Y P LAL LR+ +PTEA R L+ E R+ RP A + F+SAAEGLH L E + +WR A + + GG GG P GR+ + D+ L C
Sbjct: 32 QSPKAPSPQAHPPRSSPRDKSTTRLRGPSGKPEPKDFPPKLAARGGPSGKSKGLAG--VDEGGRS-PVFSGFRKEGGKSKTEPRDGIVERAISEAEDLVVCVLHPGGEQDDRETESSA-RPPPLLRSFDDDWEAIRTRREYVPEPLEP-ESAPLATEPFS--TSLPVSGNSTVLDRMGACDVVLARRVGPGEVVKELHLLPIHDRVDPWSSEDEGDPSRDKARSH-----PVDPCCRFVLLTSKGATVCLVRAALTASE------ASSMFPALGRSSGRASPSRPRSSSFAXXXXXXXXXXDRKIPPVGSRCSSSTTDSH----AVDG----GISAG-----GVAEDSQQL-----VVFLRQSYRFNNDMLVASITSAFLFVLTVEGVEVWTYPSENLPVTDGQGRKWSEDGRFGDMGVPLSSPAHASPRPCLLHVQKLEVDGVLPRSPARCMVPLGGETPGLLLFPPPL-------------------ATKP-----------PSPTTPLSAWPGGDNNVGQ-DFWPRKFAAWRDGFC-GLGGSKATEY------TPSPLALFLRLRSPTEAVRLLSVAEERSERPHPAKASAMFLSAAEGLHNALTFEVSAAWRAAVGLAGTASTLAGHASSSSAAEQMGGTGGQPEAPRQGRSALAADSQILQLAC 626 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1017.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig1017.140.1 >prot_F-distichus_contig1017.140.1 ID=prot_F-distichus_contig1017.140.1|Name=mRNA_F-distichus_contig1017.140.1|organism=Fucus distichus monoicous|type=polypeptide|length=1787bp KATTAAGDQLFLGTYHRPQSAGFVGASGRGRGEDSRWSGCSIPLGASRARback to top mRNA from alignment at F-distichus_contig1017:7860..19814- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig1017.140.1 ID=mRNA_F-distichus_contig1017.140.1|Name=mRNA_F-distichus_contig1017.140.1|organism=Fucus distichus monoicous|type=mRNA|length=11955bp|location=Sequence derived from alignment at F-distichus_contig1017:7860..19814- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig1017:7860..19814- >mRNA_F-distichus_contig1017.140.1 ID=mRNA_F-distichus_contig1017.140.1|Name=mRNA_F-distichus_contig1017.140.1|organism=Fucus distichus monoicous|type=CDS|length=10722bp|location=Sequence derived from alignment at F-distichus_contig1017:7860..19814- (Fucus distichus monoicous)back to top |